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Oct 13 2022
Oct 13 2022
kislinsk renamed T29348: Improve Welcome page with basic navigation hints from Checklist Measurement - Possible bug in zoom behavior. to Improve Welcome page with basic navigation hints.
floca added a project to T29347: Measurement Checklist - Possible inconsistent recentering behavior when clicking on geometry node in Data Manager.: Missing Info.
kislinsk added a project to T29352: Segmentation Options Checklist - "Create Smoothed Polygon" Seems Not to Work: Cleared.
We think that people in the real world do not use the smoothing options at all and checking for their impact revealed that they seem to have no effect at all in most cases. We decided to remove the options from the preferences. In addition, there's a message in the terminal when no smoothed mesh could be created which is the case for some single-slice segmentations. It even suggests to try again without smoothing. However, this should probably be a more prominent feedback as message box for example.
floca added a project to T29348: Improve Welcome page with basic navigation hints: Restricted Project.
kislinsk added a comment to T29344: Image Rendering - No difference between "Jet" and "Jet Transparent".
We should double-check if there's really a bug as there's a good chance that it was just misunderstood how it works. Everything that's not covered by the level window is supposed to be transparent. We should probably improve the checklist to be more clear.
floca added a project to T29355: Update 3D Segmentation Checklist to reflect current 3D Segmentation tools status: Restricted Project.
floca triaged T29344: Image Rendering - No difference between "Jet" and "Jet Transparent" as Normal priority.
floca added a project to T29344: Image Rendering - No difference between "Jet" and "Jet Transparent": Missing Info.
Please double check, if there is realy an error with Jet Transparent (or with the checklist). And on which systems.
floca triaged T29350: NodeSelectionDialog window, ok btn is only partially visible in some resolutions as Unbreak Now! priority.
floca added a project to T29350: NodeSelectionDialog window, ok btn is only partially visible in some resolutions: Restricted Project.
solution would be to add a margin to the selection dialog.
kislinsk added a project to T29357: [Segmentation] Tools can be activated without selected label: Checklist.
kislinsk triaged T29357: [Segmentation] Tools can be activated without selected label as Unbreak Now! priority.
Oct 12 2022
Oct 12 2022
• s349i renamed T29355: Update 3D Segmentation Checklist to reflect current 3D Segmentation tools status from Update 3D Segmentation Checklist to reflect current status to Update 3D Segmentation Checklist to reflect current 3D Segmentation tools status.
• s349i triaged T29355: Update 3D Segmentation Checklist to reflect current 3D Segmentation tools status as Normal priority.
kislinsk added a revision to T29338: "Rename Label" window improvements: Unknown Object (Differential Revision).
In T29338#242673, @kislinsk wrote:It's already an optional feature. You can choose if you want to add your suggestion to the standard suggestions or if you only want your custom suggestions in the preferences. When specified via command-line, the custom suggestions will be the only ones by default.
In T29338#242672, @floca wrote:One question. The current implementation has always standard suggestions and the custom suggestions are added. I am wondering it wouldn't be better if in case of custom suggestions are given, only the custom suggestions appear.
E.g. with the current logic we would be able to allow people define a study that only contain special custom suggestions and not the standard ones, would we?
One question. The current implementation has always standard suggestions and the custom suggestions are added. I am wondering it wouldn't be better if in case of custom suggestions are given, only the custom suggestions appear.
E.g. with the current logic we would be able to allow people define a study that only contain special custom suggestions and not the standard ones, would we?
floca lowered the priority of T29349: [SEG] Improve/correct button names of live wire/lasso tool. from Unbreak Now! to Needs Triage.
floca raised the priority of T29349: [SEG] Improve/correct button names of live wire/lasso tool. from High to Unbreak Now!.
floca moved T29349: [SEG] Improve/correct button names of live wire/lasso tool. from Backlog to Segmentation on the MITK (v2022.10) board.
Pushed new branch to rMITK MITK: bugfix/T29338-RenameLabelWindowImprovements.
kislinsk raised the priority of T29354: Double-clicking a label jumps to the label but not its centroid from Low to Normal.
kislinsk triaged T29354: Double-clicking a label jumps to the label but not its centroid as Low priority.
Oct 11 2022
Oct 11 2022
Deleted branch from rMITK MITK: bugfix/T29332-QtWebEngineIssuesOnLinux.
Fix in-app web pages on Ubuntu 22.04
kislinsk committed rMITK310fc4812483: Merge branch 'bugfix/T29332-QtWebEngineIssuesOnLinux' into develop (authored by kislinsk).
Merge branch 'bugfix/T29332-QtWebEngineIssuesOnLinux' into develop
Pushed new branch to rMITK MITK: bugfix/T29332-QtWebEngineIssuesOnLinux.
kislinsk moved T29332: Welcome and help pages are not shown on Ubuntu 22.04 from Segmentation to Cycle on the MITK (v2022.10) board.
floca added a project to T29329: GrowCut Filter does not work dynamic segmentations with 4D Data: Checklist.
floca moved T29329: GrowCut Filter does not work dynamic segmentations with 4D Data from Backlog to Segmentation on the MITK (v2022.10) board.
floca moved T29330: Picking Tool shows peculiar behaviour in relabel mode for dynamic Segmentations. from Backlog to Segmentation on the MITK (v2022.10) board.
floca moved T29332: Welcome and help pages are not shown on Ubuntu 22.04 from Backlog to Segmentation on the MITK (v2022.10) board.
Oct 10 2022
Oct 10 2022
• s349i updated the task description for T29352: Segmentation Options Checklist - "Create Smoothed Polygon" Seems Not to Work.
floca updated the task description for T29353: [SEG] segmentation view ends up in invalid state if segmentations are loaded before images.
floca triaged T29353: [SEG] segmentation view ends up in invalid state if segmentations are loaded before images as Unbreak Now! priority.
• s349i renamed T29352: Segmentation Options Checklist - "Create Smoothed Polygon" Seems Not to Work from Segmentation Options Checklist - "Create Smoothed Polygon" Seems Not to Work. to Segmentation Options Checklist - "Create Smoothed Polygon" Seems Not to Work.
• s349i triaged T29352: Segmentation Options Checklist - "Create Smoothed Polygon" Seems Not to Work as Normal priority.
There is already a shortcut for renaming: Ctrl+L, R but I found this too inconvenient and always ended up doing right click -> Rename instead.
• s349i updated the task description for T29345: Level Window Checklist - Default range of loaded image different for Ubuntu 22.04 and Windows 10..
• s349i triaged T29346: Level Window Checklist - Level Window slider inconsistent upper/lower bound behavior on mouse clicks. as Normal priority.
• s349i triaged T29345: Level Window Checklist - Default range of loaded image different for Ubuntu 22.04 and Windows 10. as Normal priority.
kislinsk renamed T29342: Workbench reports excessive RAM usage on MacOSX Monterey from Starting error message on MacOSX Monterey for MitkWorkbench to Workbench reports excessive RAM usage on MacOSX Monterey.
The last part with the high physical memory however *is* an issue. I reopen and rename this task.
This is as expected, since we are not an officially proven developer by Apple.
• s349i triaged T29343: Image Rendering Checklist - Unclear/Wrong instructions regarding pixel alignment after loading as Normal priority.
We may even be able to do it in code, according to the Qt documentation: QTWEBENGINE_CHROMIUM_FLAGS can also be set using {qputenv} from within the application if called before QtWebEngineQuick::initialize().
• s349i renamed T29342: Workbench reports excessive RAM usage on MacOSX Monterey from In the beginning of the installer there is a error message that MITK is not from a proven developer. You need to enforce the opening by the system preferences. This is also the case by the official version – just that you know. On the button right is the memory usage displayed. It says that I’m using 34,98 GB (218,61%)… (I only have 16GB physical memory) to Starting error message on MacOSX Monterey for MitkWorkbench.
• s349i triaged T29342: Workbench reports excessive RAM usage on MacOSX Monterey as Normal priority.
• s349i updated the task description for T29341: Moving the LevelWindow slider too many times at extreme ranges makes MITK crash..
• s349i updated the task description for T29340: Colored pixels remain unchanged, even when sliding the Level Window slider to low numbers.
• s349i updated the task description for T29340: Colored pixels remain unchanged, even when sliding the Level Window slider to low numbers.
• s349i updated the task description for T29341: Moving the LevelWindow slider too many times at extreme ranges makes MITK crash..
• s349i updated the task description for T29341: Moving the LevelWindow slider too many times at extreme ranges makes MITK crash..
• s349i triaged T29341: Moving the LevelWindow slider too many times at extreme ranges makes MITK crash. as Normal priority.
QTWEBENGINE_DISABLE_SANDBOX=1 is equal to QTWEBENGINE_CHROMIUM_FLAGS="--no-sandbox". While trying to debug the issue, I noticed that the following workaround to have the WebEngine renderer and plugins in the same process as the browser works as well: QTWEBENGINE_CHROMIUM_FLAGS="--single-process". It is and sounds less scary compared to disabling the sandbox. As a fix, we could change our start shell scripts on Linux to set the environment variable for the call of the application.
• s349i triaged T29340: Colored pixels remain unchanged, even when sliding the Level Window slider to low numbers as Normal priority.
Regarding point 3: Currently the doule click (should) allow to jump to the centroid of the label. So it has a purpose. Don't know what makes more sense UX wise. May be a keyboard short cut for renaming may also be sufficient?
Deleted branch from rMITK MITK: bugfix/T29339-F1ContextHelpViewNavigator.
Fix View Navigator plugin manual name
kislinsk committed rMITKbeb3e30c7702: Merge branch 'bugfix/T29339-F1ContextHelpViewNavigator' into develop (authored by kislinsk).
Merge branch 'bugfix/T29339-F1ContextHelpViewNavigator' into develop
kislinsk renamed T29339: Context help (F1) of View Navigator points to blank page from Context help (F1) of View Navigator and all Help views are not opened (blank page) to Context help (F1) of View Navigator points to blank page.
Pushed new branch to rMITK MITK: bugfix/T29339-F1ContextHelpViewNavigator.
kislinsk triaged T29339: Context help (F1) of View Navigator points to blank page as Normal priority.
Oct 8 2022
Oct 8 2022
kislinsk added a comment to T29334: Error on saving an MITK scene file with an empty surface, results in crash when loading the scene file again.
Deleted branch from rMITK MITK: bugfix/T29334-ImproveSurfaceVtkWriterTest.
Improve SurfaceVTKWriter test
kislinsk committed rMITKd33e611bc4d8: Merge branch 'bugfix/T29334-ImproveSurfaceVtkWriterTest' into develop (authored by kislinsk).
Merge branch 'bugfix/T29334-ImproveSurfaceVtkWriterTest' into develop