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Tue, Nov 30

gaoh added a comment to T28886: MITK Flowbench - Reopen created segmentation not working.

Yes, sorry I didn't highlight it ;):

Tue, Nov 30, 8:16 PM · MITK (v2022.04), Missing Info, Kaapana (internal)
floca edited projects for T28886: MITK Flowbench - Reopen created segmentation not working, added: MITK (v2022.04); removed MITK.
Tue, Nov 30, 6:17 PM · MITK (v2022.04), Missing Info, Kaapana (internal)
floca added a project to T28886: MITK Flowbench - Reopen created segmentation not working: Missing Info.

can you provide the files necessary to reproduce the problem outside of a container? (so at least image, seg and the scene file you generate automatically, and the call of MITK Workbench you use.)

Tue, Nov 30, 6:17 PM · MITK (v2022.04), Missing Info, Kaapana (internal)
gaoh added a project to T28886: MITK Flowbench - Reopen created segmentation not working: Kaapana (internal).
Tue, Nov 30, 4:49 PM · MITK (v2022.04), Missing Info, Kaapana (internal)
floca moved T28884: MITK Flowbench -Save Seg not working, due to file naming issues from Backlog to Segmentation on the MITK (v2022.04) board.
Tue, Nov 30, 3:45 PM · MITK (v2022.04), Kaapana (internal)
floca edited projects for T28884: MITK Flowbench -Save Seg not working, due to file naming issues, added: MITK (v2022.04); removed MITK.
Tue, Nov 30, 3:45 PM · MITK (v2022.04), Kaapana (internal)
gaoh added a project to T28884: MITK Flowbench -Save Seg not working, due to file naming issues: Kaapana (internal).
Tue, Nov 30, 1:38 PM · MITK (v2022.04), Kaapana (internal)

Fri, Nov 26

s669m added a comment to T28847: [HACKING WEEK] - Upgrading Microk8s of Kaapana - .
Error: failed to install CRD crds/crds.yaml: CustomResourceDefinition.apiextensions.k8s.io "tlsstores.traefik.containo.us" is invalid: [spec.versions: Invalid value: []apiextensions.CustomResourceDefinitionVersion(nil): must have exactly one version marked as storage version, status.storedVersions: Invalid value: []string(nil): must have at least one stored version]
Fri, Nov 26, 12:07 PM · Restricted Project, Kaapana (internal)

Tue, Nov 23

s669m added a comment to T28847: [HACKING WEEK] - Upgrading Microk8s of Kaapana - .
ubuntu@vm-129-189:~$ ./install_platform.sh 
USER: ubuntu 
Check disk space: ok
SIZE:  194G 
Check if helm is available...
ok
Get helm deployments...
Error: Kubernetes cluster unreachable: the server has asked for the client to provide credentials
Tue, Nov 23, 3:44 PM · Restricted Project, Kaapana (internal)
s669m added a comment to T28847: [HACKING WEEK] - Upgrading Microk8s of Kaapana - .
ubuntu@vm-129-189:~$ kubectl get pods -A
NAMESPACE     NAME                                    READY   STATUS      RESTARTS   AGE
base          code-server-7b9b68c556-fqrc9            1/1     Running     3          84m
base          landingpage-7c7bb855b-hz484             1/1     Running     3          86m
default       kaapana-exp-extensions-87rjt            0/1     Completed   0          84m
default       kaapana-plugin-kqdd2                    0/1     Completed   0          84m
default       kaapana-stab-extensions-ktk29           0/1     Completed   0          84m
flow-jobs     dcmsend-00382388                        0/1     Completed   0          81m
flow-jobs     dcmsend-2b49b0c7                        0/1     Completed   0          80m
flow-jobs     dcmsend-5ff032fb                        0/1     Completed   0          81m
flow-jobs     dcmsend-98c4d2c3                        0/1     Completed   0          81m
flow-jobs     dcmsend-e2633395                        0/1     Completed   0          81m
flow          airflow-6ddc54d9b4-hcvb6                2/2     Running     6          86m
flow          ctp-76cf9bbc9f-6nchk                    1/1     Running     3          86m
flow          postgres-airflow-64954bfb86-t2bjt       1/1     Running     3          86m
kube-system   coredns-588fd544bf-27hc8                1/1     Running     5          91m
kube-system   error-pages-57598754db-fz7bc            1/1     Running     3          86m
kube-system   keycloak-967cbfb55-8jjsv                1/1     Running     3          86m
kube-system   kube-helm-deployment-7f8464f9df-tnbmg   1/1     Running     3          86m
kube-system   kube-state-metrics-5695698777-dq864     1/1     Running     3          86m
kube-system   kubernetes-dashboard-69664c8798-4lw9j   1/1     Running     3          86m
kube-system   louketo-687bbbf6d9-cjgxs                1/1     Running     3          86m
kube-system   postgres-keycloak-5cc9b468d9-pkd82      1/1     Running     3          86m
kube-system   preinstall-extensions-init-w9jss        0/2     Completed   0          86m
kube-system   traefik-5786899dff-99q9f                1/1     Running     3          86m
kube-system   update-extensions-init-vjhtq            0/1     Completed   0          86m
meta          elastic-meta-de-9885fb5b4-wcptq         1/1     Running     3          86m
meta          init-meta-dfpdt                         0/1     Completed   0          86m
meta          kibana-meta-de-8f7c4bd6c-h7k94          1/1     Running     3          86m
monitoring    alertmanager-74fc67bd8-5zvtn            1/1     Running     3          86m
monitoring    grafana-6f6b5dc559-2jhcx                1/1     Running     3          86m
monitoring    prometheus-76bf79f68f-zcqfp             1/1     Running     3          86m
store         dcm4chee-78487774cf-86pkq               1/1     Running     3          86m
store         dicom-init-twb8d                        0/1     Completed   0          86m
store         ldap-684f697598-lzfnj                   1/1     Running     3          86m
store         minio-deployment-79dc7dd464-qv4sk       1/1     Running     3          86m
store         minio-init-76dn6                        0/1     Completed   0          86m
store         ohif-65cdcd8b87-lhcfd                   1/1     Running     3          86m
store         postgres-dcm4che-75d84848c5-rdqxq       1/1     Running     3          86m
ubuntu@vm-129-189:~$ 
ubuntu@vm-129-189:~$ 
ubuntu@vm-129-189:~$ 
ubuntu@vm-129-189:~$ 
ubuntu@vm-129-189:~$ kubectl get nodes
NAME                                  STATUS   ROLES    AGE   VERSION
vm-129-189.cloud.dkfz-heidelberg.de   Ready    <none>   92m   v1.21.6-3+dd57cd4fdc581a
Tue, Nov 23, 2:57 PM · Restricted Project, Kaapana (internal)

Mon, Nov 22

s669m raised the priority of T28870: UPenn's GaNDLF Integration with Kaapana (v1) from Normal to High.
Mon, Nov 22, 10:11 AM · Restricted Project, Kaapana (internal)
s669m triaged T28870: UPenn's GaNDLF Integration with Kaapana (v1) as Normal priority.
Mon, Nov 22, 10:11 AM · Restricted Project, Kaapana (internal)

Wed, Nov 17

s669m closed T28845: Airflow sometimes fail during fresh installation on ubuntu 20.04 as Resolved.
Wed, Nov 17, 12:45 PM · Kaapana (internal)

Thu, Nov 11

s669m moved T28845: Airflow sometimes fail during fresh installation on ubuntu 20.04 from Discussion to In Progress on the Kaapana (internal) board.
Thu, Nov 11, 10:53 AM · Kaapana (internal)
s669m renamed T28847: [HACKING WEEK] - Upgrading Microk8s of Kaapana - from Upgrading Microk8s of Kaapana - HACKING WEEK to [HACKING WEEK] - Upgrading Microk8s of Kaapana - .
Thu, Nov 11, 10:53 AM · Restricted Project, Kaapana (internal)
s669m claimed T28847: [HACKING WEEK] - Upgrading Microk8s of Kaapana - .
Thu, Nov 11, 10:50 AM · Restricted Project, Kaapana (internal)
s669m renamed T28847: [HACKING WEEK] - Upgrading Microk8s of Kaapana - from Upgrading Microk8s of Kaapana to Upgrading Microk8s of Kaapana - HACKING WEEK.
Thu, Nov 11, 10:50 AM · Restricted Project, Kaapana (internal)
s669m triaged T28847: [HACKING WEEK] - Upgrading Microk8s of Kaapana - as High priority.
Thu, Nov 11, 10:50 AM · Restricted Project, Kaapana (internal)

Wed, Nov 10

s669m triaged T28845: Airflow sometimes fail during fresh installation on ubuntu 20.04 as Normal priority.
Wed, Nov 10, 12:05 PM · Kaapana (internal)

Fri, Nov 5

s669m triaged T28836: Try whole Kaapana in Kata run time as Normal priority.
Fri, Nov 5, 9:03 AM · Restricted Project, Kaapana (internal)

Oct 29 2021

floca added a comment to T27968: CTP gets stuck on large import.

Thanks for the update!

Oct 29 2021, 11:29 AM · Kaapana (internal)
gaoh added a comment to T27968: CTP gets stuck on large import.

In the current setup, the transfer is handled from airflow. This is also the case in the wDB-gateway. This stress test should therefore perform the same way and work. I have also a different test with random data, that work up to a limit. The system has now different recovery possibilities and can therefore handle large (random sorted) datasets better. I guess that there are sometimes sill errors, but since the system then restarts, no-one notices it. But there are still limits (depending mainly on the server (RAM)).
So I would also say this ticket is resolved for now. On a long run, changing the whole import process could remain a valid option.

Oct 29 2021, 9:45 AM · Kaapana (internal)

Oct 28 2021

floca added a comment to T27968: CTP gets stuck on large import.

@gaoh have we also tested it with our wDB stress test?

Oct 28 2021, 2:55 PM · Kaapana (internal)
schererj moved T28751: code-server container fails to build from Backlog to Resolved on the Kaapana (internal) board.
Oct 28 2021, 12:55 PM · Kaapana (internal)
schererj moved T27968: CTP gets stuck on large import from Backlog to Resolved on the Kaapana (internal) board.
Oct 28 2021, 12:55 PM · Kaapana (internal)
schererj closed T27968: CTP gets stuck on large import as Resolved.

So after I switched the DICOM send from CTP to Airflow the issue should be solved.
I have sent multiple terabyte of data without any noteworthy issues.
I still think we could probably remove CTP completely (since it only is used as a DICOM receiver anyway and introduces a considerable amount of complexity to the system).
But it should work as it is right now and the removal can be handled as future work.

Oct 28 2021, 12:48 PM · Kaapana (internal)
schererj moved T28744: Komorbidom kaapana from Discussion to In Progress on the Kaapana (internal) board.
Oct 28 2021, 10:26 AM · Request for Discussion, Kaapana (internal)
s280a added a comment to T28744: Komorbidom kaapana.

yes of course

Oct 28 2021, 10:24 AM · Request for Discussion, Kaapana (internal)
schererj added a comment to T28744: Komorbidom kaapana.

@s280a can we move this into "in progress" ?

Oct 28 2021, 10:19 AM · Request for Discussion, Kaapana (internal)
s669m moved T28759: Architecture : better solution for separating user workflow from system workflow (spinning up new airflow for every jobs) from Discussion to In Progress on the Kaapana (internal) board.
Oct 28 2021, 9:54 AM · Kaapana (internal)

Oct 22 2021

j162k closed T28751: code-server container fails to build as Resolved.

Fixed by T28753

Oct 22 2021, 2:06 PM · Kaapana (internal)

Oct 21 2021

s669m updated the task description for T28759: Architecture : better solution for separating user workflow from system workflow (spinning up new airflow for every jobs).
Oct 21 2021, 9:56 AM · Kaapana (internal)
s669m added a comment to T28759: Architecture : better solution for separating user workflow from system workflow (spinning up new airflow for every jobs).
Oct 21 2021, 9:55 AM · Kaapana (internal)
s669m moved T28754: Linking Kaapana website contact form to DKFZ contact form ? from Discussion to In Progress on the Kaapana (internal) board.
Oct 21 2021, 9:51 AM · Kaapana (internal)
s669m triaged T28759: Architecture : better solution for separating user workflow from system workflow (spinning up new airflow for every jobs) as Normal priority.
Oct 21 2021, 9:49 AM · Kaapana (internal)

Oct 19 2021

s669m triaged T28754: Linking Kaapana website contact form to DKFZ contact form ? as Low priority.
Oct 19 2021, 11:40 AM · Kaapana (internal)

Oct 18 2021

schererj closed T28582: How important the CNI configuration in a single node Microk8s cluster with Containerd as Resolved.
Oct 18 2021, 12:29 PM · Request for Discussion, Kaapana (internal)
schererj closed T28599: Nested-V pods accessibility of GPU which is running on Kaapana Powered Server as Resolved.
Oct 18 2021, 12:29 PM · Request for Discussion, Kaapana (internal)
schererj closed T28653: website feedbacks - comments from Ralf as Resolved.
Oct 18 2021, 12:29 PM · Request for Discussion, Kaapana (internal)
j162k renamed T28751: code-server container fails to build from code-server fails on container build to code-server container fails to build.
Oct 18 2021, 9:57 AM · Kaapana (internal)
j162k created T28751: code-server container fails to build.
Oct 18 2021, 9:57 AM · Kaapana (internal)

Oct 15 2021

s280a updated the task description for T28744: Komorbidom kaapana.
Oct 15 2021, 1:59 PM · Request for Discussion, Kaapana (internal)
s280a added a project to T28744: Komorbidom kaapana: Request for Discussion.
Oct 15 2021, 1:59 PM · Request for Discussion, Kaapana (internal)
s280a triaged T28744: Komorbidom kaapana as High priority.
Oct 15 2021, 1:58 PM · Request for Discussion, Kaapana (internal)

Oct 5 2021

nolden added members for Kaapana (internal): kochch, j162k.
Oct 5 2021, 11:27 AM

Oct 4 2021

m139l updated the task description for T28458: Airflow-App.
Oct 4 2021, 2:24 AM · Kaapana (internal)

Sep 10 2021

gaoh added a comment to T28600: Kaapana containerd version is 1.2.5 which is 2 years old: Need to update that.

so, this is what we have tried so far:
helm updated to 3.6
microk9s to 1.22
first problem: v1beta1 version cannot be used anymore --> changed to v1 in the repo
next problem: our treafik is not compatible anymore (with 1.22)

Sep 10 2021, 12:18 PM · Request for Discussion, Kaapana (internal)
m139l claimed T28600: Kaapana containerd version is 1.2.5 which is 2 years old: Need to update that.
Sep 10 2021, 9:31 AM · Request for Discussion, Kaapana (internal)
gaoh lowered the priority of T28529: Replace Elasticsearch and Kibana with apache-licensed opensearch from Normal to Low.
Sep 10 2021, 9:20 AM · Request for Discussion, Kaapana (internal)

Aug 26 2021

s669m moved T28653: website feedbacks - comments from Ralf from In Progress to Resolved on the Kaapana (internal) board.
Aug 26 2021, 10:15 AM · Request for Discussion, Kaapana (internal)