kislinsk renamed T27952: Reduce LabelSetTest and ImageGeneratorTest execution times from Reduce LabelSetTest execution time to Reduce LabelSetTest and ImageGeneratorTest execution times.

Nov 17 2020, 11:18 PM · MITK (v2021.02)

kislinsk renamed T27952: Reduce LabelSetTest and ImageGeneratorTest execution times from Investigate LabelSetTest to Reduce LabelSetTest execution time.

Nov 17 2020, 10:57 PM · MITK (v2021.02)

gaoh added a comment to T27968: CTP gets stuck on large import.

The CTP thread responsible for sending the data to the PACs crashed:

Nov 17 2020, 3:57 PM · Kaapana (internal)

nolden created T27968: CTP gets stuck on large import.

Nov 17 2020, 3:50 PM · Kaapana (internal)

menjivar added a member for IMSY: m700r.

Nov 17 2020, 3:36 PM

kislinsk added a revision to T27952: Reduce LabelSetTest and ImageGeneratorTest execution times: Unknown Object (Differential Revision).

Nov 17 2020, 2:47 PM · MITK (v2021.02)

kislinsk added a comment to T27952: Reduce LabelSetTest and ImageGeneratorTest execution times.

Pushed new branch bugfix/T27952-FixLabelSetTest.

Nov 17 2020, 2:46 PM · MITK (v2021.02)

kislinsk added a comment to T27952: Reduce LabelSetTest and ImageGeneratorTest execution times.

1.5 reasons:

mitk::LabelSet::AddLabel() takes a pretty long time to complete while it fiddles around with an std::map
Not only does every test unnecessarily initialize a label set with 200 labels, but one test adds another 65535 labels to test the maximum allowed number of labels

Nov 17 2020, 2:11 PM · MITK (v2021.02)

eisenman committed rCHALLENGER76a9c34c5ff3: Revise readme file (authored by eisenman).

Revise readme file

Nov 17 2020, 11:19 AM

eisenman committed rCHALLENGER79a2a6d3e71f: Use DKFZ logo with higher resolution (authored by eisenman).

Use DKFZ logo with higher resolution

Nov 17 2020, 11:19 AM

kislinsk closed T27953: Write user guide for rewritten Remeshing view as Resolved.

Nov 17 2020, 10:56 AM · MITK (v2021.02)

kahl added a comment to T27564: [Segmentation] Integrate deep learning methods for Segmentation in MITK.

Deleted branch feature/T27564-integrate-deeplearning-segmentation-V2.

Nov 17 2020, 10:54 AM · MITK

kahl added a comment to T27564: [Segmentation] Integrate deep learning methods for Segmentation in MITK.

Deleted branch feature/T27564-integrate-deeplearning-segmentation-evaluation.

Nov 17 2020, 10:54 AM · MITK

kahl added a comment to T27564: [Segmentation] Integrate deep learning methods for Segmentation in MITK.

Deleted branch feature/T27564-integrate-deeplearning-segmentation.

Nov 17 2020, 10:54 AM · MITK

kahl added a comment to T27500: Use Python/C-API for execution of Python Code with MITK-Python-Service.

Deleted branch feature/T27500-use-PythonCApi-in-python-service-V2.

Nov 17 2020, 10:54 AM · MITK

kahl added a comment to T27500: Use Python/C-API for execution of Python Code with MITK-Python-Service.

Deleted branch feature/T27500-use-PythonCApi-in-python-service.

Nov 17 2020, 10:54 AM · MITK

kislinsk added a comment to T27953: Write user guide for rewritten Remeshing view.

Deleted branch bugfix/T27953-RemeshingDocumentation.

Nov 17 2020, 10:52 AM · MITK (v2021.02)

kislinsk committed rMITKca96979ab501: Rewrite Remeshing view documentation (authored by kislinsk).

Rewrite Remeshing view documentation

Nov 17 2020, 10:52 AM

kislinsk committed rMITK9a3b26c4e275: Merge branch 'bugfix/T27953-RemeshingDocumentation' into develop (authored by kislinsk).

Merge branch 'bugfix/T27953-RemeshingDocumentation' into develop

Nov 17 2020, 10:52 AM

kislinsk added a comment to T27953: Write user guide for rewritten Remeshing view.

Pushed new branch bugfix/T27953-RemeshingDocumentation.

Nov 17 2020, 10:51 AM · MITK (v2021.02)

Nov 16 2020

kislinsk added a comment to T27955: Debug vtkOpenGLRenderWindow::SupportsOpenGL() on Windows CI clients.

Deleted branch bugfix/T27955-FixRenderingTestHelper.

Nov 16 2020, 9:18 PM · Noteworthy, MITK (v2021.02)

kislinsk added a comment to T27952: Reduce LabelSetTest and ImageGeneratorTest execution times.

Yes, eventually the test times out. But even if it would "fix" the test to increase this value, individual unit tests should aim to last not longer than around a second, at maximum a few seconds.

Nov 16 2020, 7:39 PM · MITK (v2021.02)

eisenman moved T27930: Revise examples given in the vignettes from Backlog to In Progress on the challengeR (v1.0) board.

Nov 16 2020, 6:30 PM · challengeR (v1.0)

eisenman moved T27929: Provide documentation for plot functions from In Progress to Done on the challengeR (v1.0) board.

The plot functions that are used in the report have Roxygen documentation now. There's also a vignette called "Visualizations" that shows and explains the plots along with the corresponding plot function.

Nov 16 2020, 5:52 PM · challengeR (v1.0)

eisenman committed rCHALLENGER248ff75fd785: Merge branch 'feature/T27929-ProvideVisualizationOverview' into develop (authored by eisenman).

Merge branch 'feature/T27929-ProvideVisualizationOverview' into develop

Nov 16 2020, 5:49 PM

eisenman committed rCHALLENGER5ee4b2aa921e: Add man pages (authored by eisenman).

Add man pages

Nov 16 2020, 5:40 PM

eisenman committed rCHALLENGER99ffad44f9e7: Clean up (authored by eisenman).

Clean up

Nov 16 2020, 5:32 PM

eisenman committed rCHALLENGER5ff8bf846b1d: Cite paper (authored by eisenman).

Cite paper

Nov 16 2020, 5:32 PM

eisenman committed rCHALLENGER31a95a501028: Add documentation for cluster dendrogram (authored by eisenman).

Add documentation for cluster dendrogram

Nov 16 2020, 5:32 PM

eisenman committed rCHALLENGER2c54ff2dfae3: Reference file after rename (authored by eisenman).

Reference file after rename

Nov 16 2020, 5:21 PM

eisenman committed rCHALLENGER701786916e7e: Rename reportMultiple.Rmd to report.Rmd (authored by eisenman).

Rename reportMultiple.Rmd to report.Rmd

Nov 16 2020, 5:21 PM

eisenman committed rCHALLENGER85d6351208ab: Add documentation for significance map (authored by eisenman).

Add documentation for significance map

Nov 16 2020, 4:56 PM

eisenman committed rCHALLENGER1e7fcd95307f: Rename wrapper.R to rankingMethods.R (authored by eisenman).

Rename wrapper.R to rankingMethods.R

Nov 16 2020, 4:43 PM

eisenman committed rCHALLENGERddcfcd69bf81: Add documentation for consensus (authored by eisenman).

Add documentation for consensus

Nov 16 2020, 4:41 PM

floca added a comment to T27952: Reduce LabelSetTest and ImageGeneratorTest execution times.

Could it be that the test time out time is 600 sec? Because in the last month all tests runs of LabelSetTest with worked (as long as the duration was below 600 sec). All failed tests took longer then 600 sec.
For what ever reason under win the test is relativaly fast ~150-200 sec. Under linux/mac it is lurking arround 590 sec +- 25...

Nov 16 2020, 4:33 PM · MITK (v2021.02)

eisenman committed rCHALLENGER9a3447d1eeb0: Rename significancePlot.R to significanceMap.R (authored by eisenman).

Rename significancePlot.R to significanceMap.R

Nov 16 2020, 4:28 PM

eisenman committed rCHALLENGER1b3e79568328: Add documentation for violin plot (authored by eisenman).

Add documentation for violin plot

Nov 16 2020, 2:27 PM

eisenman committed rCHALLENGER1bbb649283e5: Add documentation for stability plot functions (authored by eisenman).

Add documentation for stability plot functions

Nov 16 2020, 2:19 PM

eisenman committed rCHALLENGER082a9fd7ed02: Test that stabilityByAlgorithm returns the correct number of plots (authored by eisenman).

Test that stabilityByAlgorithm returns the correct number of plots

Nov 16 2020, 2:19 PM

eisenman committed rCHALLENGER1b86559604af: Test that blob plot for visualizing ranking stability across tasks returns one… (authored by eisenman).

Test that blob plot for visualizing ranking stability across tasks returns one…

Nov 16 2020, 2:19 PM

eisenman created T27963: Task names printed as R output in Sec. 3.1 of multi-task report.

Nov 16 2020, 10:52 AM · challengeR (v1.0)

kalali moved T26854: Unattended Qt installation from Restricted Project Column to Restricted Project Column on the Restricted Project board.

Nov 16 2020, 10:13 AM · CI, Restricted Project, MITK

kalali moved T26854: Unattended Qt installation from Backlog to Done on the CI board.

Nov 16 2020, 10:13 AM · CI, Restricted Project, MITK

kislinsk merged task T26854: Unattended Qt installation into Restricted Maniphest Task.

Nov 16 2020, 10:12 AM · CI, Restricted Project, MITK

kislinsk added a comment to T26854: Unattended Qt installation.

Yes. In fact, this task can already be closed as it doesn't work anymore. :-)

Nov 16 2020, 10:11 AM · CI, Restricted Project, MITK

kalali added a comment to T26854: Unattended Qt installation.

This seems to be superfluous if {T27960} works for us.

Nov 16 2020, 10:02 AM · CI, Restricted Project, MITK

kislinsk updated the task description for T27952: Reduce LabelSetTest and ImageGeneratorTest execution times.

Nov 16 2020, 8:09 AM · MITK (v2021.02)

kislinsk triaged T27959: MITK with VTK 9 fails on Fedora CI clients as Normal priority.

Nov 16 2020, 7:22 AM · MITK

Nov 15 2020

kislinsk closed T27955: Debug vtkOpenGLRenderWindow::SupportsOpenGL() on Windows CI clients as Resolved.

Nov 15 2020, 11:30 PM · Noteworthy, MITK (v2021.02)

kislinsk added a project to T27955: Debug vtkOpenGLRenderWindow::SupportsOpenGL() on Windows CI clients: Noteworthy.

It is not an OpenGL problem but a Windows policy that prevents remote SSH users to actually start GUI applications. It wasn't triggered before as VTK's OpenGL test succeeds now.

Nov 15 2020, 11:16 PM · Noteworthy, MITK (v2021.02)

kislinsk committed rMITK1b56f181395c: Add missing parameter (authored by kislinsk).

Add missing parameter

Nov 15 2020, 11:08 PM

kislinsk committed rMITK42a9fbf8941e: Merge branch 'bugfix/T27955-FixRenderingTestHelper' into develop (authored by kislinsk).

Merge branch 'bugfix/T27955-FixRenderingTestHelper' into develop

Nov 15 2020, 11:08 PM

kislinsk committed rMITKd66955a790e0: Make test drivers aware of rendering tests (authored by kislinsk).

Make test drivers aware of rendering tests

Nov 15 2020, 10:27 PM

kislinsk committed rMITK75ee6b5528a7: Merge branch 'bugfix/T27955-FixRenderingTestHelper' into develop (authored by kislinsk).

Merge branch 'bugfix/T27955-FixRenderingTestHelper' into develop