Deleted branch from rMITK MITK: feature/T30393-CmdLineAppStartScripts.
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Apr 18 2024
Apr 18 2024
floca closed T28525: Design refactoring of LabelSetImage and associated classes, a subtask of T28524: Refactor LabelSetImage and associated classes., as Resolved.
Apr 17 2024
Apr 17 2024
kislinsk added a comment to T30393: Move start scripts for command-line apps in installer into apps subdirectory.
Remove stub for deprecated function
kislinsk committed rMITKee1d3036ad1b: Make Linux start script for apps more robust (authored by kislinsk).
Make Linux start script for apps more robust
kislinsk committed rMITK66501c045270: Move start scripts of command-line apps into apps subdirectory (authored by kislinsk).
Move start scripts of command-line apps into apps subdirectory
kislinsk committed rMITKc8c443f35614: Migrate custom command-line app script to mitkFunctionCreateCommandLineApp (authored by kislinsk).
Migrate custom command-line app script to mitkFunctionCreateCommandLineApp
kislinsk committed rMITKed252ae783e7: Merge branch 'feature/T30393-CmdLineAppStartScripts' into develop (authored by kislinsk).
Merge branch 'feature/T30393-CmdLineAppStartScripts' into develop
a178n committed rMITK34b810129724: Merge branch 'develop' into feature/T30353-tool-confirm-exit (authored by a178n).
Merge branch 'develop' into feature/T30353-tool-confirm-exit
a178n committed rMITK4e153e1b8ac0: Add confirm dialog before exiting Totalseg tool (authored by a178n).
Add confirm dialog before exiting Totalseg tool
Update message text
a178n committed rMITK7d9ec741ede5: Rename ConfirmBeforeExit and moving its implementation to SegWithPreviewTool… (authored by a178n).
Rename ConfirmBeforeExit and moving its implementation to SegWithPreviewTool…
Update qmessage box text
Confirm before tool exit
Apr 16 2024
Apr 16 2024
The current state of presets/a startup dialog is as follows:
Apr 15 2024
Apr 15 2024
floca added a revision to T30390: [SEG] Utilities - rework/fix boolean operations: Unknown Object (Differential Revision).
T28796 Refactor_multi_label_morph_ops
floca committed rMITK6031a526b4e5: Fixed QmitkMultiLabelInspector update error of (Lock and Visibility) (authored by floca).
Fixed QmitkMultiLabelInspector update error of (Lock and Visibility)
Fixed review comments
fixed review remarks
floca closed T28796: [Segmentation][Utilities] Morphological Operations behave unexpectedly as Resolved by committing rMITK6b88efaafec0: Reworked morphological operation widget..
floca committed rMITKfddd89627124: Extracted CreateLabelMask out of LabelSetImage and moved to… (authored by floca).
Extracted CreateLabelMask out of LabelSetImage and moved to…
Reworked morphological operation widget.
Fixed gcc errors
Added LabelSetImage::AddLabelWithContent
floca committed rMITKc454448ad60c: Improved QmitkMultiLabelInspector to expand sub trees automatically (authored by floca).
Improved QmitkMultiLabelInspector to expand sub trees automatically
floca committed rMITKdca43b582b37: Extracted CreateLabelMask out of LabelSetImage and moved to… (authored by floca).
Extracted CreateLabelMask out of LabelSetImage and moved to…
ok. thanks for investigating. I will have a look.
a178n renamed T30392: [Segmentation] Totalsegmentator & Otsu is buggy from [Segmentation] Totalsegmentator is buggy to [Segmentation] Totalsegmentator & Otsu is buggy.
Further testing/debugging reveals that the error occurs in TotalSegmentatorTool::UpdatePrepare() method at preview->RemoveLabels(preview->GetAllLabelValues()). More precisely, the LabelSetImage::RemoveLabel method has this->InvokeEvent(LabelRemovedEvent(pixelValue)); which causes the exception. This issue is also applicable for Otsu tool (hence updating the title of this task).
Apr 12 2024
Apr 12 2024
kislinsk added a comment to T29652: [Preferences] Cannot open SAM preference page after tool activation.
Since it is the only preference page not loading and it is only happening when your tool is active it is most definitely related to a shared resource that is blocked by your tool. Something like the Python process or its encapsulation. Since it does not seem to be a complete dead lock (?) probably something like a mutex or similar is involved? Or whatever the internals of start_python_daemon() are, only one instance may be active per process maybe?
Apr 11 2024
Apr 11 2024
floca added a revision to T28796: [Segmentation][Utilities] Morphological Operations behave unexpectedly: Unknown Object (Differential Revision).
kislinsk added a revision to T30393: Move start scripts for command-line apps in installer into apps subdirectory: Unknown Object (Differential Revision).
kislinsk added a comment to T30393: Move start scripts for command-line apps in installer into apps subdirectory.
Pushed new branch to rMITK MITK: feature/T30393-CmdLineAppStartScripts.
kislinsk triaged T30393: Move start scripts for command-line apps in installer into apps subdirectory as Normal priority.
Fixed review remarks
floca committed rMITK7c1b545dfcba: Merge branch 'feature/T29390-Improve_conversion_for_multilabel' of ssh… (authored by floca).
Merge branch 'feature/T29390-Improve_conversion_for_multilabel' of ssh…
floca committed rMITKccb469becb9f: Merge branch 'feature/T29390-Improve_conversion_for_multilabel' into develop (authored by floca).
Merge branch 'feature/T29390-Improve_conversion_for_multilabel' into develop
Pushed new branch to rMITK MITK: feature/T29390-Improve_conversion_for_multilabel.
Apr 10 2024
Apr 10 2024
Deleted branch from rMITK MITK: bugfix/T29390-FixLandingOfD910.
Pushed new branch to rMITK MITK: bugfix/T29390-FixLandingOfD910.
kislinsk added a revision to T29390: How to ease the handling of external generated segmentations: Unknown Object (Differential Revision).
kislinsk committed rMITK561a06dc3c79: T29390 Improve_conversion_for_multilabel (authored by kislinsk).
T29390 Improve_conversion_for_multilabel
kislinsk committed rMITK7efda63428f8: T29390 Improve_conversion_for_multilabel (authored by kislinsk).
T29390 Improve_conversion_for_multilabel
floca added a revision to T28796: [Segmentation][Utilities] Morphological Operations behave unexpectedly: Unknown Object (Differential Revision).
T29390 Improve_conversion_for_multilabel
Fixed review remarks
floca committed rMITKabec925e75d2: added busy cursor to conversion and extraction widget. (authored by floca).
added busy cursor to conversion and extraction widget.
Fixed gcc compile errors
floca committed rMITK3c7e04a018d7: Fix/imporve context menu for multi label selections (authored by floca).
Fix/imporve context menu for multi label selections
floca committed rMITKf8332240e469: Fixed lookup table update error in visibility functions (authored by floca).
Fixed lookup table update error in visibility functions
Updated documentation
floca committed rMITK0ac6451a68f1: Introduce GetGroupImageWorkarround to avoid cloning (authored by floca).
Introduce GetGroupImageWorkarround to avoid cloning
floca committed rMITKd0c29dc6e134: Corrected update of selector check function when switching modes. (authored by floca).
Corrected update of selector check function when switching modes.
floca committed rMITKf2394ef77dca: Fixed that QmitkConvertToMultiLabelSegmentions can also deal with (authored by floca).
Fixed that QmitkConvertToMultiLabelSegmentions can also deal with
floca committed rMITKdc103bd5e3df: Fixed error in TransferLabelContent functions when (authored by floca).
Fixed error in TransferLabelContent functions when
floca committed rMITK174e82c4c81b: Fixed output pixel type of mitk::PadImageFilter (authored by floca).
Fixed output pixel type of mitk::PadImageFilter
Added extraction widget to utilities
Added CreateLabelClassMap
floca committed rMITK3f12f8d6e6cc: Extracted CreateLabelMask out of LabelSetImage and moved to… (authored by floca).
Extracted CreateLabelMask out of LabelSetImage and moved to…
Refactored redundant code parts
floca committed rMITK678cb8260dc2: Added conversion helper needed for conversion widget. (authored by floca).
Added conversion helper needed for conversion widget.
floca committed rMITK5929b3acc794: Add conversion widget to seg utilities. Remove old conversion widgets from ui. (authored by floca).
Add conversion widget to seg utilities. Remove old conversion widgets from ui.
floca committed rMITKf24bf62e1d49: Added ConvertToMultiLabelSegmentation widget (authored by floca).
Added ConvertToMultiLabelSegmentation widget
floca committed rMITK2e06940e99b1: Added precondition checks to LabelSetImage::AddLayer (authored by floca).
Added precondition checks to LabelSetImage::AddLayer
floca committed rMITKcfafe22b2e42: Introduces QmitkMultiNodeSelectionWidget::CurrentSelectionViolatesCheckFunction… (authored by floca).
Introduces QmitkMultiNodeSelectionWidget::CurrentSelectionViolatesCheckFunction…
Fixed incorrect hint message.
floca committed rMITKe7aa0eb234c6: Exracted default node predicates for segmentation and reference image (authored by floca).
Exracted default node predicates for segmentation and reference image
floca committed rMITK13c7684700b1: used c++14 short version for std::remove_const<>::type (review comment) (authored by floca).
used c++14 short version for std::remove_const<>::type (review comment)
In a certain sense, the bug would be fixed by making sure the menus are present when the layout changes.
However, it might make sense to rethink the usefulness of these menus in the MxN context, since many features are not usable anyway (e.g. rotation).
The layout management of the rightmost menu can still be used, but might need heavy extension for useful usage. We might redesign it entirely, to make it more general for Std- and MxN-view, or remove it from MxN on purpose.
Apr 9 2024
Apr 9 2024
kislinsk closed T30377: Clean up/rewrite View Navigator, a subtask of T30283: Make MITK Workbench more customizable for end-users, as Resolved.
Deleted branch from rMITK MITK: bugfix/T30377-ViewNavigator.
Remove deprecated macro
kislinsk committed rMITKa65c9955eb9f: Respect "enumerate" view attribute when enumerating views (authored by kislinsk).
Respect "enumerate" view attribute when enumerating views
kislinsk committed rMITKd79986b03bff: Introduce "enumerate" attribute for views in plugin.xml files (authored by kislinsk).
Introduce "enumerate" attribute for views in plugin.xml files
Rewrite View Navigator
Fix plugin name
kislinsk committed rMITKda264194c2b1: Rename (and inverse) "enumerate" view attribute to "internal" (authored by kislinsk).
Rename (and inverse) "enumerate" view attribute to "internal"
Add documentation and comments
Move code from internal to src folder
Make GetPreferences() virtual
kislinsk committed rMITK01980d360089: Consider visibility of categories resp. tool bars (authored by kislinsk).
Consider visibility of categories resp. tool bars
kislinsk committed rMITK4a6f6d4c5ac1: Move tool bar category pref to tool bar pref page (authored by kislinsk).
Move tool bar category pref to tool bar pref page
kislinsk committed rMITK2e2bf7bf0ed5: Add more text to the View Navigator user guide (authored by kislinsk).
Add more text to the View Navigator user guide
kislinsk committed rMITK92adba921996: Merge branch 'bugfix/T30377-ViewNavigator' into develop (authored by kislinsk).
Merge branch 'bugfix/T30377-ViewNavigator' into develop
a178n updated the task description for T29652: [Preferences] Cannot open SAM preference page after tool activation.
a178n added a comment to T29652: [Preferences] Cannot open SAM preference page after tool activation.
Latest testing reveals that the issue is fixed in Ubuntu 22.04.
I think the reason is Qt6 update.
a178n added a revision to T30357: [MedSAM] Add user documentaiton: Unknown Object (Differential Revision).