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Jan 19 2021

kalali added a parent task for T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation: T28176: [Segmentation] Inspection of module and plugin.
Jan 19 2021, 12:32 PM · MITK (v2022.04), Breaking Change
kalali added a subtask for T28176: [Segmentation] Inspection of module and plugin: T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation.
Jan 19 2021, 12:32 PM · Moved to git.dkfz.de, MITK (v2024.12)
kalali triaged T28176: [Segmentation] Inspection of module and plugin as Normal priority.
Jan 19 2021, 12:29 PM · Moved to git.dkfz.de, MITK (v2024.12)
s669m added a subtask for T28175: TFDA MVP v1: T28165: TFDA Repo Creation.
Jan 19 2021, 12:07 PM · Restricted Project
s669m added a parent task for T28165: TFDA Repo Creation: T28175: TFDA MVP v1.
Jan 19 2021, 12:07 PM · Restricted Project
s669m added a parent task for T28166: Executor Separation : T28175: TFDA MVP v1.
Jan 19 2021, 12:06 PM · Restricted Project
s669m added a subtask for T28175: TFDA MVP v1: T28166: Executor Separation .
Jan 19 2021, 12:06 PM · Restricted Project
s669m added a parent task for T28167: System set up: Multi Provider Site Version: T28175: TFDA MVP v1.
Jan 19 2021, 12:06 PM · Restricted Project
s669m added a subtask for T28175: TFDA MVP v1: T28167: System set up: Multi Provider Site Version.
Jan 19 2021, 12:06 PM · Restricted Project
s669m renamed T28175: TFDA MVP v1 from TFDA MCV 2 to TFDA MVP v2.
Jan 19 2021, 12:05 PM · Restricted Project
s669m created T28175: TFDA MVP v1.
Jan 19 2021, 12:05 PM · Restricted Project
kalali added a comment to T27498: [Selection widgets] Define default for auto selection / listening mechanism.

Just double checked it. As I said the segmentation and ML segmentation view already use auto select and work as they should.

Jan 19 2021, 11:46 AM · Restricted Project, MITK (v2021.02)
kalali updated the task description for T26399: Workbench crash on simple tree model update.
Jan 19 2021, 11:27 AM · Moved to git.dkfz.de, MITK, Request for Discussion
nolden triaged T28174: Fix minor C++ style issues as Normal priority.
Jan 19 2021, 10:05 AM · MITK
floca moved T28118: Refactoring of SegTool2D from Backlog to Segmentation on the MITK (v2021.02) board.
Jan 19 2021, 9:36 AM · MITK (v2021.02)
kislinsk renamed T27701: Overhaul or remove PluginGenerator from Plugin Generator tests fail to Overhaul or remove PluginGenerator.
Jan 19 2021, 4:54 AM · MITK, Next Milestone
kislinsk edited projects for T27701: Overhaul or remove PluginGenerator, added: Next Milestone, MITK; removed MITK (v2021.02).
Jan 19 2021, 4:54 AM · MITK, Next Milestone
kislinsk closed T28173: Get rid of CMake warnings with CMake v3.19 as Resolved.
Jan 19 2021, 4:41 AM · MITK (v2021.02)
kislinsk added a comment to T28173: Get rid of CMake warnings with CMake v3.19.

Deleted branch from rMITK MITK: bugfix/T28173-CMakeWarnings.

Jan 19 2021, 4:40 AM · MITK (v2021.02)
kislinsk committed rMITK409a16c91932: Use CMake's FindDCMTK module (authored by kislinsk).
Use CMake's FindDCMTK module
Jan 19 2021, 4:40 AM
kislinsk committed rMITK6b1b7c6dafcd: Search for DCMTK only if necessary (authored by kislinsk).
Search for DCMTK only if necessary
Jan 19 2021, 4:40 AM
kislinsk committed rMITKbd82e0170b8c: Reduce CMake config noise (authored by kislinsk).
Reduce CMake config noise
Jan 19 2021, 4:40 AM
kislinsk committed rMITK9eff0bbb30ed: Get rid of CMake deprecation warning (authored by kislinsk).
Get rid of CMake deprecation warning
Jan 19 2021, 4:40 AM
kislinsk committed rMITK020d23f2ed29: Merge branch 'bugfix/T28173-CMakeWarnings' into develop (authored by kislinsk).
Merge branch 'bugfix/T28173-CMakeWarnings' into develop
Jan 19 2021, 4:40 AM
kislinsk added a comment to T28173: Get rid of CMake warnings with CMake v3.19.

Pushed new branch to rMITK MITK: bugfix/T28173-CMakeWarnings.

Jan 19 2021, 4:40 AM · MITK (v2021.02)
kislinsk triaged T28173: Get rid of CMake warnings with CMake v3.19 as Low priority.
Jan 19 2021, 4:36 AM · MITK (v2021.02)

Jan 18 2021

floca committed rMITK0440a5b618a8: T28127 Reopen_segmentation_in_MITK (authored by floca).
T28127 Reopen_segmentation_in_MITK
Jan 18 2021, 11:14 PM
floca closed T28127: Reopen segmentation in MITK as Resolved by committing rMITK5f64c29977dd: Made NODE_PREDICATE_GEOMETRY_DEFAULT_CHECK_PRECISION less strict.
Jan 18 2021, 11:14 PM · MITK (v2021.02), Restricted Project, Kaapana (internal)
floca committed rMITK5f64c29977dd: Made NODE_PREDICATE_GEOMETRY_DEFAULT_CHECK_PRECISION less strict (authored by floca).
Made NODE_PREDICATE_GEOMETRY_DEFAULT_CHECK_PRECISION less strict
Jan 18 2021, 11:14 PM
floca added a revision to T28127: Reopen segmentation in MITK: Unknown Object (Differential Revision).
Jan 18 2021, 9:42 PM · MITK (v2021.02), Restricted Project, Kaapana (internal)
floca added a comment to T28127: Reopen segmentation in MITK.

It depends. NODE_PREDICATE_GEOMETRY_DEFAULT_CHECK_PRECISION is only for checking in predicates;

As long as nobody has missused it so far, it is just used for that. ;) At least I have introduced it with this purpose and only used it there.

Jan 18 2021, 4:01 PM · MITK (v2021.02), Restricted Project, Kaapana (internal)
neher committed rMITKDIFF58b42eb2204e: Merge branch 'T28017-VTK9-CodeIssues2' (authored by neher).
Merge branch 'T28017-VTK9-CodeIssues2'
Jan 18 2021, 3:44 PM
s669m added a member for MIC: p212r.
Jan 18 2021, 3:34 PM
neher committed rMITKDIFFa1bbe1077655: Final changes for dependency upgrade compatibility (authored by neher).
Final changes for dependency upgrade compatibility
Jan 18 2021, 3:20 PM
neher added a comment to T28017: Update to vtk 9.

Pushed new branch T28017-VTK9-CodeIssues2.

Jan 18 2021, 3:20 PM · MITK Diffusion
kislinsk triaged T28172: Include MITK-ProjectTemplate in MITK Differential builds as Normal priority.
Jan 18 2021, 3:07 PM · MITK (v2021.10), CI
kislinsk closed T28171: Migrate MITK-ProjectTemplate to current MITK develop branch as Resolved.
Jan 18 2021, 2:45 PM · MITK (v2021.02), MITK-ProjectTemplate
kislinsk added a comment to T28171: Migrate MITK-ProjectTemplate to current MITK develop branch.

Deleted branch from rMPT MITK-ProjectTemplate: bugfix/T28171-MigrateToCurrentMITKDevelopBranch.

Jan 18 2021, 2:45 PM · MITK (v2021.02), MITK-ProjectTemplate
kislinsk committed rMPT9551835199a1: Merge branch 'bugfix/T28171-MigrateToCurrentMITKDevelopBranch' into develop (authored by kislinsk).
Merge branch 'bugfix/T28171-MigrateToCurrentMITKDevelopBranch' into develop
Jan 18 2021, 2:44 PM
kislinsk committed rMPTd5f24705e385: Fix enum value names (authored by kislinsk).
Fix enum value names
Jan 18 2021, 2:44 PM
kislinsk added a comment to T28171: Migrate MITK-ProjectTemplate to current MITK develop branch.

Pushed new branch to rMPT MITK-ProjectTemplate: bugfix/T28171-MigrateToCurrentMITKDevelopBranch.

Jan 18 2021, 2:43 PM · MITK (v2021.02), MITK-ProjectTemplate
kislinsk triaged T28171: Migrate MITK-ProjectTemplate to current MITK develop branch as Normal priority.
Jan 18 2021, 2:36 PM · MITK (v2021.02), MITK-ProjectTemplate
kislinsk closed T28170: Test new hooks for MITK-ProjectTemplate as Resolved.
Jan 18 2021, 2:17 PM · MITK-ProjectTemplate, MITK
kislinsk added a comment to T28170: Test new hooks for MITK-ProjectTemplate.

Deleted branch from rMPT MITK-ProjectTemplate: bugfix/T28170-TestHooks.

Jan 18 2021, 2:09 PM · MITK-ProjectTemplate, MITK
kislinsk added a comment to T28170: Test new hooks for MITK-ProjectTemplate.

Pushed new branch to rMPT MITK-ProjectTemplate: bugfix/T28170-TestHooks.

Jan 18 2021, 2:09 PM · MITK-ProjectTemplate, MITK
kislinsk added a comment to T28170: Test new hooks for MITK-ProjectTemplate.

Deleted branch from rMPT MITK-ProjectTemplate: bugfix/T28170-TestHooks.

Jan 18 2021, 2:08 PM · MITK-ProjectTemplate, MITK
kislinsk added a comment to T28170: Test new hooks for MITK-ProjectTemplate.

Pushed new branch to rMPT MITK-ProjectTemplate: bugfix/T28170-TestHooks.

Jan 18 2021, 2:08 PM · MITK-ProjectTemplate, MITK
kislinsk added a comment to T28170: Test new hooks for MITK-ProjectTemplate.

Deleted branch from rMPT MITK-ProjectTemplate: bugfix/T28170-TestHooks.

Jan 18 2021, 2:07 PM · MITK-ProjectTemplate, MITK
k656s added a member for Kaapana (internal): m113r.
Jan 18 2021, 2:00 PM
kislinsk triaged T28170: Test new hooks for MITK-ProjectTemplate as Normal priority.
Jan 18 2021, 1:55 PM · MITK-ProjectTemplate, MITK
kislinsk committed rMPTa3cdbda12c8c: Adapt branching model to MITK repository (authored by kislinsk).
Adapt branching model to MITK repository
Jan 18 2021, 12:51 PM
kislinsk added a comment to T28127: Reopen segmentation in MITK.

It depends. NODE_PREDICATE_GEOMETRY_DEFAULT_CHECK_PRECISION is only for checking in predicates; not for constant use throughout MITK while are there calculations after calculations after calculations and so the values would drift away further from the actual truth, right? So for a temporary fix, I'm okay. But we should definitely check what is going on in DCMQI and fix on that side preferably.

Jan 18 2021, 12:32 PM · MITK (v2021.02), Restricted Project, Kaapana (internal)
floca added a comment to T28127: Reopen segmentation in MITK.

1e-5 should still be conservative enough for the purpose of geometries.

Is your statement also valid for 5e-5? Beause 1e-5 would not be enough in that case.

Jan 18 2021, 11:31 AM · MITK (v2021.02), Restricted Project, Kaapana (internal)
s669m created T28169: TFDA MVP v1 powered by Kaapana.
Jan 18 2021, 10:50 AM · Kaapana (internal)
s669m triaged T28168: TFDA Code Repo Creation as Normal priority.
Jan 18 2021, 10:46 AM · Kaapana (internal)
s669m created T28167: System set up: Multi Provider Site Version.
Jan 18 2021, 10:25 AM · Restricted Project
s669m triaged T28166: Executor Separation as High priority.
Jan 18 2021, 10:23 AM · Restricted Project
s669m created T28165: TFDA Repo Creation.
Jan 18 2021, 10:20 AM · Restricted Project
kislinsk closed T28164: Update date in copyright as Resolved.
Jan 18 2021, 6:39 AM · MITK (v2021.02)
kislinsk added a comment to T28164: Update date in copyright.

Deleted branch bugfix/T28164-CopyrightDate.

Jan 18 2021, 6:39 AM · MITK (v2021.02)
kislinsk committed rMITK7609ba5f5be8: Merge branch 'bugfix/T28164-CopyrightDate' into develop (authored by kislinsk).
Merge branch 'bugfix/T28164-CopyrightDate' into develop
Jan 18 2021, 6:38 AM
kislinsk committed rMITKe1f7ba295014: Adjust date range (authored by kislinsk).
Adjust date range
Jan 18 2021, 6:38 AM
kislinsk added a comment to T28164: Update date in copyright.

Pushed new branch bugfix/T28164-CopyrightDate.

Jan 18 2021, 6:38 AM · MITK (v2021.02)
kislinsk triaged T28164: Update date in copyright as Low priority.
Jan 18 2021, 6:33 AM · MITK (v2021.02)
kislinsk added a comment to T28127: Reopen segmentation in MITK.

Thanks for looking into this issue as well. :-) I think 1e-5 is okay. We/you already introduced NODE_PREDICATE_GEOMETRY_DEFAULT_CHECK_PRECISION not long ago since we had similar issues and 1e-5 should still be conservative enough for the purpose of geometries.

Jan 18 2021, 5:01 AM · MITK (v2021.02), Restricted Project, Kaapana (internal)

Jan 17 2021

floca claimed T28127: Reopen segmentation in MITK.

The problem seems to be that DCMQI rounds the the orientation matrix values at the 5th decimal place when storing to DCM Seg.

Jan 17 2021, 8:41 PM · MITK (v2021.02), Restricted Project, Kaapana (internal)
floca added a revision to T28148: Fix/Refactor ContourElement: Restricted Differential Revision.
Jan 17 2021, 1:50 PM · MITK (v2021.02)
floca added a comment to T28118: Refactoring of SegTool2D.

Pushed new branch feature/T28118-Refactor_SegTool2D_and_derived_classes.

Jan 17 2021, 1:45 PM · MITK (v2021.02)

Jan 16 2021

floca added a revision to T28148: Fix/Refactor ContourElement: Unknown Object (Differential Revision).
Jan 16 2021, 8:48 PM · MITK (v2021.02)

Jan 15 2021

kislinsk added a comment to T28159: Officially support MITK using system Qt.

I understand. :-) Just wanted to give you more options to think about as it is probably only a temporal solution. Sooner or later (currently read "later"), our minimum version requirements won't match again with the OS-provided Qt version. So we cannot run away from it forever I guess. :D

Jan 15 2021, 12:40 PM · Auto-closed, CI, Request for Discussion, MITK
gaoh added a comment to T28159: Officially support MITK using system Qt.

yes exactly, the problem with the scripted version, ist still, that it is necessary to provide credentials. That was fine, as long we were the only ones creating the containers.
The version of @nolden downloading the packages in ubuntu allows others to just build the container, without having to provide credentials at all.

Jan 15 2021, 12:35 PM · Auto-closed, CI, Request for Discussion, MITK
nolden added a comment to T28159: Officially support MITK using system Qt.

Thank. New command-line interface looks nice, but the challenge is where to put the credentials, especially if you want to put the script open source like in the Kaapana dockerfiles.

Jan 15 2021, 12:14 PM · Auto-closed, CI, Request for Discussion, MITK
kislinsk renamed T27693: Packaging Python does not work/is not implemented from Cannot start nightly workbench on a clean Ubuntu 18/20 to Packaging Python does not work/is not implemented.
Jan 15 2021, 12:09 PM · MITK
kislinsk merged T27894: Linux nightly installer doesn't start on Fedora into T27693: Packaging Python does not work/is not implemented.
Jan 15 2021, 12:09 PM · MITK
kislinsk merged task T27894: Linux nightly installer doesn't start on Fedora into T27693: Packaging Python does not work/is not implemented.
Jan 15 2021, 12:09 PM · MITK (v2021.02)
kislinsk edited projects for T27196: Rewrite packaging of MITK, added: Next Milestone, MITK; removed MITK (v2021.02).
Jan 15 2021, 12:07 PM · Moved to git.dkfz.de, MITK, Cleared

Jan 14 2021

kislinsk triaged T28159: Officially support MITK using system Qt as Normal priority.

As it already works (?) and we will stay at least another year with Qt 5 we can do this. But in general, do you know of the new Qt Installer Framework with command-line interface? It's much easier now to install Qt with a single command and there are a few possibilities to provide credentials if that's an issue. See here for examples: https://phabricator.mitk.org/T27960#214043

Jan 14 2021, 5:22 PM · Auto-closed, CI, Request for Discussion, MITK
neher added a comment to T28017: Update to vtk 9.

Fiber mapper issue: https://vtk.org/doc/nightly/html/classvtkOpenGLPolyDataMapper.html#a80cc4bf99b408c63cad0a59c0388ffae

Jan 14 2021, 4:47 PM · MITK Diffusion
neher committed rMITKDIFF79272f527e51: Merge branch 'T28017-VTK9-CodeIssues' (authored by neher).
Merge branch 'T28017-VTK9-CodeIssues'
Jan 14 2021, 4:42 PM
neher committed rMITKDIFFdd4062dbe8b6: Solved tinyxml update issues (authored by neher).
Solved tinyxml update issues
Jan 14 2021, 4:42 PM
nolden added a project to T28159: Officially support MITK using system Qt: CI.
Jan 14 2021, 3:51 PM · Auto-closed, CI, Request for Discussion, MITK
nolden updated the task description for T28159: Officially support MITK using system Qt.
Jan 14 2021, 3:50 PM · Auto-closed, CI, Request for Discussion, MITK
nolden created T28159: Officially support MITK using system Qt.
Jan 14 2021, 3:46 PM · Auto-closed, CI, Request for Discussion, MITK
kislinsk closed T28155: Make Qt log messages optional as Resolved.
Jan 14 2021, 11:09 AM · MITK (v2021.02)
kislinsk added a comment to T28155: Make Qt log messages optional.

Deleted branch feature/T28155-MakeQtLogMessagesOptional.

Jan 14 2021, 11:08 AM · MITK (v2021.02)
kislinsk committed rMITK8aeabe996f16: Make Qt log messages optional (authored by kislinsk).
Make Qt log messages optional
Jan 14 2021, 11:08 AM
kislinsk committed rMITK46eee069a4bf: Merge branch 'feature/T28155-MakeQtLogMessagesOptional' into develop (authored by kislinsk).
Merge branch 'feature/T28155-MakeQtLogMessagesOptional' into develop
Jan 14 2021, 11:08 AM
kislinsk added a comment to T28155: Make Qt log messages optional.

Pushed new branch feature/T28155-MakeQtLogMessagesOptional.

Jan 14 2021, 11:07 AM · MITK (v2021.02)
p212r removed a watcher for Kaapana (internal): p212r.
Jan 14 2021, 10:02 AM
p212r added a watcher for Kaapana (internal): p212r.
Jan 14 2021, 10:02 AM
gaoh added a member for Kaapana (internal): e249r.
Jan 14 2021, 9:39 AM
schererj added a member for Kaapana (internal): p212r.
Jan 14 2021, 9:39 AM

Jan 13 2021

kalali triaged T28156: [Segmentation] Fix timestep / timepoint types as Normal priority.
Jan 13 2021, 3:43 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk added a revision to T28155: Make Qt log messages optional: Unknown Object (Differential Revision).
Jan 13 2021, 3:33 PM · MITK (v2021.02)
kislinsk triaged T28155: Make Qt log messages optional as Normal priority.
Jan 13 2021, 3:26 PM · MITK (v2021.02)
kislinsk updated subscribers of T28151: [macOS] MITK (resp. VTK) doesn't compile with XCode 12.
Jan 13 2021, 2:53 PM · Noteworthy, MITK (v2021.02)
kislinsk closed T28151: [macOS] MITK (resp. VTK) doesn't compile with XCode 12 as Resolved.

Since we need to patch VTK anyway, I took the opportunity to upgrade from VTK 9.0.0 to 9.0.1.

Jan 13 2021, 2:52 PM · Noteworthy, MITK (v2021.02)
kislinsk added a comment to T28151: [macOS] MITK (resp. VTK) doesn't compile with XCode 12.

Deleted branch bugfix/T28151-FixVTKOnMacOSXCode12.

Jan 13 2021, 2:51 PM · Noteworthy, MITK (v2021.02)
kislinsk committed rMITKc0ad4f1441a1: Exclude unistd.h from Windows builds (authored by kislinsk).
Exclude unistd.h from Windows builds
Jan 13 2021, 2:47 PM
kislinsk committed rMITKda3e2af67311: Merge branch 'bugfix/T28151-FixVTKOnMacOSXCode12' into develop (authored by kislinsk).
Merge branch 'bugfix/T28151-FixVTKOnMacOSXCode12' into develop
Jan 13 2021, 2:47 PM