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Jan 22 2020
The new multi node selection functionality allows to select an image and multiple corresponding masks. However, this will compute the statistics for each mask individually.
From the description it is not clear what is requested here:
- compute the unified statistics of both masks
- compute two individual statistics, one for each mask respectively
Pushed new branch T27025-FixDocumentationWarnings.
Too meta, fixed a few warnings, though.
Pushed new branch T27024-FixSpectralUnmixingTest.
Here's my CMake merge request: https://gitlab.kitware.com/cmake/cmake/merge_requests/4258
In CMake, Source/CTest/cmCTestTestHandler.cxx, cmCTestTestHandler::ProcessHandler(), there is a check if the sum of passed and failed tests equal zero. After another pre-check (see below), "No tests were found!!!" is logged as ERROR_MESSAGE. In Source/cmCTest.cxx, cmCTest::Log(), cmSystemTools::SetErrorOccured() is called if the log type is ERROR_MESSAGE.
Jan 21 2020
Reverted the removal as CTest still fails, probably because of no tests in superbuild projects. I think the best way to solve this is to contribute to CMake.
Pushed new branch T27022-RemoveUnusedSubprojects.
I have introduced a new superbuild and MITK-build advanced cache variable called MITK_XVFB_TESTING. If switched on, it will prepend testdriver calls with xvfb-run --auto-servernum resulting in having a virtual frame buffer available for rendering tests. This is useful in headless systems like continuous integration clients. Works for Linux. To install xvfb call sudo apt install xvfb.
Pushed new branch T24660-selection_history_inspector.
Jan 20 2020
Pushed new branch T26475-Remove-node-change-reaction.
Pushed new branch T26998-Properties-view-with-single-node-selection-widget.
Pushed new branch T27019-RenderingTestsOnLinux.
Hello, my email is
Pushed new branch T27002-DICOM-inspector-view-with-single-node-selection-widget.
Hi Ralf,
to make it clear, for the Signal to Concentration Conversion via the T1 map, MITK required the T1 map but in the drop down menu we could only select the DCE DICOM images.
We tried to fix the problem in two ways:
- Editing the T1 map to have more than two values otherwise MITK would recognized it as a mask.
- Uncecking binary property of the data node for the T1 map.
In the first case, we are able to select the T1 map in the drop menu, but we get the Dimension 2 is not in (ItkOutputImageType::ImageDimension) error.
In the secon case, we are still not able to select the T1 map in the drop menu.
In T27006#191923, @Sara wrote:Hi Ralf,
We changed the properties of the data node regarding the T1 map but unsuccessfully.
We always get "Dimension 2 is not in (ItkOutputImageType::ImageDimension)" error.
Just to be sure. The work-arround with the "binary" property (see above) is only for the problem that you weren't able to select the T1 map in the view.
It is not a solution for the Dimension 2 is not in (ItkOutputImageType::ImageDimension) error!
Hi Ralf,
We changed the properties of the data node regarding the T1 map but unsuccessfully.
We always get "Dimension 2 is not in (ItkOutputImageType::ImageDimension)" error.
We also checked the dimensionality of the T1 map from the Details Menu:
Dimension: 2 Dimensions: 60 200
The simulated DICOM data come from the QIBA dataset.
The T1 map in nifti format was obtained from the Variable Flip Angle simulated data that comes along with the QIBA dataset.
We computed the T1 map using ROCKETSHIP.
Thank you,
Sara and Daisy.
@jsolislemus : Could you provide me your email adresse? Then I will send you the instructions how to transfer data.
Thanks
Jan 19 2020
The problem was caused by the fact that the T1 map has just 2 different pixel values. Therfore it was automatically classified as binary image /mask on loading.
Jan 18 2020
That would be great. Thanks!