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Jul 19 2023

a178n added a project to T29596: Move out FAST checkbox from Advanced: Request for Discussion.
Jul 19 2023, 11:36 AM · MITK (v2024.06), Request for Discussion, Checklist

Jul 17 2023

s434n claimed T29591: [Segmentation] [Live Wire] Multiple reports of a crash due to image access out of bounds.
Jul 17 2023, 11:51 AM · MITK (v2023.12), Checklist

Jul 4 2023

s434n moved T29579: [Documentation] Help page of Pointset Interaction has no table of contents from Backlog to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:26 PM · MITK (v2024.06), Checklist
s434n moved T29580: [Measurement] Unclear how to end drawing with some tools from Backlog to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:26 PM · MITK (v2024.06), Checklist
floca moved T28797: [Segmentation[MultiLabel][Utilities] Using 4D data with dynamic segmentations results in 3D data from Backlog to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:15 PM · MITK (v2024.06), Checklist
floca moved T28796: [Segmentation][Utilities] Morphological Operations behave unexpectedly from Backlog to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:15 PM · MITK (v2024.06), Checklist
floca moved T29098: [3D Segmentation] UL Threshold Tool - 0 intensity value not include in slider range? from Backlog to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:14 PM · MITK (v2024.06), Restricted Project, Checklist
floca moved T28798: [Segmentation][MultiLabel][Utilities] UI is inconsistent / unstable from Backlog to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:12 PM · MITK (v2024.06), Checklist
floca moved T29569: [Checklist] Update TotalSegmentator & nnUNet checklist from Tests/Checklists to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:07 PM · MITK (v2023.12), Checklist
floca moved T29578: [Segmentation] Removing last selected region in picking tool does not update preview from Segmentation to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:06 PM · MITK (v2024.06), Checklist
floca moved T29590: [Segmentation] [Erase] Erasing everything of the selected label when clicking on background is surprising from Segmentation to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:06 PM · MITK (v2024.06), Checklist
floca moved T29583: [Interpolation] Interpolation is not triggered correctly from Segmentation to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:06 PM · MITK (v2024.06), Checklist
floca moved T29584: [Interpolation] Confirming 3D interpolation does not set mode to "disabled" from Segmentation to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:06 PM · MITK (v2024.06), Checklist
floca moved T29594: Improve MITK help text for nnUNet tool from Segmentation to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:05 PM · MITK (v2024.06), Checklist, Request for Discussion
floca moved T29591: [Segmentation] [Live Wire] Multiple reports of a crash due to image access out of bounds from Segmentation to Cycle on the MITK (v2023.12) board.
Jul 4 2023, 5:00 PM · MITK (v2023.12), Checklist

Jun 28 2023

Unknown Object (User) added a comment to T29076: [Segmentation] Pressing DEL should delete a label.
Jun 28 2023, 9:51 AM · MITK (v2024.06), Checklist
Unknown Object (User) added a subtask for T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary": Unknown Object (Maniphest Task).
Jun 28 2023, 9:32 AM · MITK (v2024.06), Checklist, Request for Discussion
Unknown Object (User) added a subtask for T29076: [Segmentation] Pressing DEL should delete a label: Unknown Object (Maniphest Task).
Jun 28 2023, 9:32 AM · MITK (v2024.06), Checklist

Jun 12 2023

a178n added a comment to T29566: TotalSegmentator GUI bug: Install button not Activated correctly.

Deleted branch from rMITK MITK: feature/T29566-totalseg-checklist-bugfix.

Jun 12 2023, 11:09 AM · Checklist, MITK (v2023.04)
a178n added a comment to T29541: nnUNet tool Update documentation.

Deleted branch from rMITK MITK: feature/T29541-nnunet-update-doku.

Jun 12 2023, 11:09 AM · Checklist, MITK (v2023.04)

May 17 2023

kislinsk moved T29352: Segmentation Options Checklist - "Create Smoothed Polygon" Seems Not to Work from Backlog to Segmentation on the MITK (v2023.12) board.
May 17 2023, 3:09 PM · MITK (v2024.06), Cleared, Checklist
kislinsk moved T29569: [Checklist] Update TotalSegmentator & nnUNet checklist from Backlog to Tests/Checklists on the MITK (v2023.12) board.
May 17 2023, 3:05 PM · MITK (v2023.12), Checklist
kislinsk moved T29578: [Segmentation] Removing last selected region in picking tool does not update preview from Backlog to Segmentation on the MITK (v2023.12) board.
May 17 2023, 3:05 PM · MITK (v2024.06), Checklist
kislinsk moved T29581: [Segmentation] Switch tool icon next to cursor when inverting via Ctrl from Backlog to Segmentation on the MITK (v2023.12) board.
May 17 2023, 3:05 PM · MITK (v2024.06), Checklist
kislinsk moved T29582: [Segmentation] Error when pressing "Undo" after undoing all fill changes from Backlog to Segmentation on the MITK (v2023.12) board.
May 17 2023, 3:05 PM · Missing Info, MITK (v2024.06), Checklist
kislinsk moved T29583: [Interpolation] Interpolation is not triggered correctly from Backlog to Segmentation on the MITK (v2023.12) board.
May 17 2023, 3:04 PM · MITK (v2024.06), Checklist
kislinsk moved T29584: [Interpolation] Confirming 3D interpolation does not set mode to "disabled" from Backlog to Segmentation on the MITK (v2023.12) board.
May 17 2023, 3:04 PM · MITK (v2024.06), Checklist
kislinsk moved T29588: [MxN] Lock icon is unintuitive from Backlog to mxn MultiWidget on the MITK (v2023.12) board.
May 17 2023, 3:04 PM · MITK (v2024.06), Checklist
kislinsk moved T29590: [Segmentation] [Erase] Erasing everything of the selected label when clicking on background is surprising from Backlog to Segmentation on the MITK (v2023.12) board.
May 17 2023, 3:04 PM · MITK (v2024.06), Checklist
kislinsk moved T29591: [Segmentation] [Live Wire] Multiple reports of a crash due to image access out of bounds from Backlog to Segmentation on the MITK (v2023.12) board.
May 17 2023, 3:04 PM · MITK (v2023.12), Checklist
kislinsk moved T29594: Improve MITK help text for nnUNet tool from Backlog to Segmentation on the MITK (v2023.12) board.
May 17 2023, 3:04 PM · MITK (v2024.06), Checklist, Request for Discussion
kislinsk moved T29595: Make nnUNet folder parsing more resilient to stray folders from Backlog to Segmentation on the MITK (v2023.12) board.
May 17 2023, 3:04 PM · MITK (v2024.06), Request for Discussion, Checklist
kislinsk moved T29596: Move out FAST checkbox from Advanced from Backlog to Segmentation on the MITK (v2023.12) board.
May 17 2023, 3:04 PM · MITK (v2024.06), Request for Discussion, Checklist
kislinsk moved T29597: TotalSeg didn't remember python environment from Backlog to Segmentation on the MITK (v2023.12) board.
May 17 2023, 3:04 PM · MITK (v2024.06), Checklist

May 16 2023

kislinsk edited projects for T29591: [Segmentation] [Live Wire] Multiple reports of a crash due to image access out of bounds, added: MITK, Next Milestone; removed MITK (v2023.04).

Option 2 seems not to be enough, since I still can paint in other windows, even though it makes a little difference at least. Also, while free drawing a segment, you can leave a window and place a control point outside of the image which leads to the crashes reported.

May 16 2023, 8:18 AM · MITK (v2023.12), Checklist

May 15 2023

floca added a comment to T29591: [Segmentation] [Live Wire] Multiple reports of a crash due to image access out of bounds.

I can now tell at least why you can paint into other windows.

May 15 2023, 8:56 PM · MITK (v2023.12), Checklist
a178n closed T29566: TotalSegmentator GUI bug: Install button not Activated correctly as Resolved.
May 15 2023, 7:11 PM · Checklist, MITK (v2023.04)

May 14 2023

a178n closed T29541: nnUNet tool Update documentation as Resolved.

D831 fixed this. Hence closing.

May 14 2023, 11:10 PM · Checklist, MITK (v2023.04)
a178n added a revision to T29566: TotalSegmentator GUI bug: Install button not Activated correctly: Restricted Differential Revision.
May 14 2023, 8:59 PM · Checklist, MITK (v2023.04)

May 13 2023

floca closed T29577: [Segmentation] Otsu tool does not create and transfer label names correctly in added groups as Resolved by committing rMITK474310366223: Fixed error and underlying problem (label set cloning is not correct).
May 13 2023, 6:07 PM · Checklist, MITK (v2023.04)

May 12 2023

kislinsk closed T29585: [MxN] Loading layout needs .json file ending as Resolved.
May 12 2023, 5:44 PM · Checklist, MITK (v2023.04)
kislinsk added a comment to T29573: [Segmentation] Segmentation without label (only empty Group 0) cannot be saved.

Deleted branch from rMITK MITK: bugfix/T29573-FixEmptyGroupCrashes.

May 12 2023, 11:38 AM · Checklist, MITK (v2023.04)
kislinsk closed T29573: [Segmentation] Segmentation without label (only empty Group 0) cannot be saved as Resolved by committing rMITK41d11b884ad5: [Segmentation/IO] Fix several crashes with empty groups.
May 12 2023, 11:38 AM · Checklist, MITK (v2023.04)

May 11 2023

floca closed T29575: [Segmentation] Threshold tool crashes when new label is created during preview as Resolved by committing rMITK1d634abd525d: Fix crash in binary threshold tools.
May 11 2023, 4:36 PM · Request for Discussion, Checklist, MITK (v2023.04)
a178n added a comment to T29566: TotalSegmentator GUI bug: Install button not Activated correctly.

Pushed new branch to rMITK MITK: feature/T29566-totalseg-checklist-bugfix.

May 11 2023, 2:06 PM · Checklist, MITK (v2023.04)
s434n added a revision to T29585: [MxN] Loading layout needs .json file ending: Restricted Differential Revision.
May 11 2023, 11:03 AM · Checklist, MITK (v2023.04)
kislinsk reassigned T29575: [Segmentation] Threshold tool crashes when new label is created during preview from kislinsk to floca.

@floca wants to resolve these crashes differently. Handing over...

May 11 2023, 10:58 AM · Request for Discussion, Checklist, MITK (v2023.04)
a178n added a comment to T29541: nnUNet tool Update documentation.

Pushed new branch to rMITK MITK: feature/T29541-nnunet-update-doku.

May 11 2023, 10:05 AM · Checklist, MITK (v2023.04)

May 10 2023

floca added a revision to T29577: [Segmentation] Otsu tool does not create and transfer label names correctly in added groups: Restricted Differential Revision.
May 10 2023, 4:14 PM · Checklist, MITK (v2023.04)
kislinsk added a revision to T29573: [Segmentation] Segmentation without label (only empty Group 0) cannot be saved: Restricted Differential Revision.
May 10 2023, 3:03 PM · Checklist, MITK (v2023.04)
kislinsk added a comment to T29573: [Segmentation] Segmentation without label (only empty Group 0) cannot be saved.

EmptyGroups.mitk3 MBDownload

May 10 2023, 3:01 PM · Checklist, MITK (v2023.04)
kislinsk added a comment to T29573: [Segmentation] Segmentation without label (only empty Group 0) cannot be saved.

Pushed new branch to rMITK MITK: bugfix/T29573-FixEmptyGroupCrashes.

May 10 2023, 2:54 PM · Checklist, MITK (v2023.04)
kislinsk claimed T29573: [Segmentation] Segmentation without label (only empty Group 0) cannot be saved.
May 10 2023, 11:04 AM · Checklist, MITK (v2023.04)
kislinsk added a project to T29566: TotalSegmentator GUI bug: Install button not Activated correctly: Checklist.
May 10 2023, 10:56 AM · Checklist, MITK (v2023.04)
kislinsk triaged T29596: Move out FAST checkbox from Advanced as Normal priority.
May 10 2023, 10:53 AM · MITK (v2024.06), Request for Discussion, Checklist
kislinsk assigned T29541: nnUNet tool Update documentation to a178n.
May 10 2023, 10:52 AM · Checklist, MITK (v2023.04)
kislinsk moved T29541: nnUNet tool Update documentation from Backlog to Cycle on the MITK (v2023.04) board.
May 10 2023, 10:52 AM · Checklist, MITK (v2023.04)
kislinsk removed a project from T29577: [Segmentation] Otsu tool does not create and transfer label names correctly in added groups: Missing Info.
May 10 2023, 10:43 AM · Checklist, MITK (v2023.04)
kislinsk moved T29575: [Segmentation] Threshold tool crashes when new label is created during preview from Backlog to MITK Meeting on the Request for Discussion board.
May 10 2023, 9:29 AM · Request for Discussion, Checklist, MITK (v2023.04)
kislinsk added a project to T29575: [Segmentation] Threshold tool crashes when new label is created during preview: Request for Discussion.

Request for Discussion:

  • Notify tools about selected label changes or label property changes like color?
  • Show preview as active or inactive label (with or without border)?
May 10 2023, 9:29 AM · Request for Discussion, Checklist, MITK (v2023.04)

May 9 2023

s434n triaged T29585: [MxN] Loading layout needs .json file ending as Normal priority.
May 9 2023, 4:27 PM · Checklist, MITK (v2023.04)
s434n moved T29585: [MxN] Loading layout needs .json file ending from Backlog to Cycle on the MITK (v2023.04) board.
May 9 2023, 4:27 PM · Checklist, MITK (v2023.04)
s434n claimed T29585: [MxN] Loading layout needs .json file ending.
May 9 2023, 3:46 PM · Checklist, MITK (v2023.04)
s434n closed T29587: [MxN] Resetting render window to specific image always fills visible area with highest image in Data Manager as Invalid.

This is behavior as intended. The "reset" is basically a reinit to the specified image. When there is an image higher in the list, it is rendered on top, just as in the standard display and the data manager.
I have added a hint in the checklist to make it clear this is how it is supposed to work.

May 9 2023, 3:46 PM · Checklist, MITK (v2023.04)
kislinsk closed T29336: Changing theme in Preferences has no effect. as Invalid.

Tried on different macOS versions. Couldn't reproduce.

May 9 2023, 1:51 PM · MITK, Checklist
kislinsk added a comment to T29589: [Segmentation] [Lasso] Add/subtract not in sync with radio buttons in GUI.

Deleted branch from rMITK MITK: bugfix/T29589-FixQtIncompatibility.

May 9 2023, 12:27 PM · Checklist, MITK (v2023.04)
kislinsk added a comment to T29589: [Segmentation] [Lasso] Add/subtract not in sync with radio buttons in GUI.

Pushed new branch to rMITK MITK: bugfix/T29589-FixQtIncompatibility.

May 9 2023, 12:22 PM · Checklist, MITK (v2023.04)
kislinsk added a revision to T29575: [Segmentation] Threshold tool crashes when new label is created during preview: Restricted Differential Revision.
May 9 2023, 11:57 AM · Request for Discussion, Checklist, MITK (v2023.04)
kislinsk added a comment to T29575: [Segmentation] Threshold tool crashes when new label is created during preview.

Seems to be related to

May 9 2023, 10:52 AM · Request for Discussion, Checklist, MITK (v2023.04)
a178n triaged T29597: TotalSeg didn't remember python environment as Normal priority.
May 9 2023, 10:35 AM · MITK (v2024.06), Checklist
kislinsk claimed T29575: [Segmentation] Threshold tool crashes when new label is created during preview.
May 9 2023, 10:23 AM · Request for Discussion, Checklist, MITK (v2023.04)
a178n created T29596: Move out FAST checkbox from Advanced.
May 9 2023, 10:22 AM · MITK (v2024.06), Request for Discussion, Checklist
a178n edited projects for T29569: [Checklist] Update TotalSegmentator & nnUNet checklist, added: MITK (v2023.04); removed MITK.
May 9 2023, 10:16 AM · MITK (v2023.12), Checklist
a178n triaged T29595: Make nnUNet folder parsing more resilient to stray folders as Normal priority.
May 9 2023, 10:08 AM · MITK (v2024.06), Request for Discussion, Checklist
a178n raised the priority of T29541: nnUNet tool Update documentation from Normal to Unbreak Now!.
May 9 2023, 10:02 AM · Checklist, MITK (v2023.04)
a178n triaged T29594: Improve MITK help text for nnUNet tool as Normal priority.
May 9 2023, 10:01 AM · MITK (v2024.06), Checklist, Request for Discussion
kislinsk closed T29571: [Segmentation] Changing groups on loaded multi-group segmentations crash as Resolved by committing rMITK69c105b655f8: Fix crash when switching groups on loaded multi-group segmentations.
May 9 2023, 10:00 AM · Checklist, MITK (v2023.04)
kislinsk closed T29589: [Segmentation] [Lasso] Add/subtract not in sync with radio buttons in GUI as Resolved.
May 9 2023, 9:59 AM · Checklist, MITK (v2023.04)
kislinsk added a comment to T29589: [Segmentation] [Lasso] Add/subtract not in sync with radio buttons in GUI.

Deleted branch from rMITK MITK: bugfix/T29589-SyncGUIToAddOrSubtractMode.

May 9 2023, 9:59 AM · Checklist, MITK (v2023.04)
kislinsk added a comment to T29589: [Segmentation] [Lasso] Add/subtract not in sync with radio buttons in GUI.

Pushed new branch to rMITK MITK: bugfix/T29589-SyncGUIToAddOrSubtractMode.

May 9 2023, 9:56 AM · Checklist, MITK (v2023.04)
floca claimed T29577: [Segmentation] Otsu tool does not create and transfer label names correctly in added groups.
May 9 2023, 9:42 AM · Checklist, MITK (v2023.04)
floca added a comment to T29590: [Segmentation] [Erase] Erasing everything of the selected label when clicking on background is surprising.

See the point and would agree. But I am biased as I never liked the feature ;).

May 9 2023, 9:41 AM · MITK (v2024.06), Checklist
floca raised the priority of T29577: [Segmentation] Otsu tool does not create and transfer label names correctly in added groups from Normal to Unbreak Now!.

Important as long as we do not know if it hints to a more fundamental underlying problem.

May 9 2023, 9:33 AM · Checklist, MITK (v2023.04)
floca moved T29575: [Segmentation] Threshold tool crashes when new label is created during preview from Backlog to Cycle on the MITK (v2023.04) board.
May 9 2023, 9:30 AM · Request for Discussion, Checklist, MITK (v2023.04)
floca triaged T29573: [Segmentation] Segmentation without label (only empty Group 0) cannot be saved as High priority.
May 9 2023, 9:30 AM · Checklist, MITK (v2023.04)
floca moved T29589: [Segmentation] [Lasso] Add/subtract not in sync with radio buttons in GUI from Backlog to Cycle on the MITK (v2023.04) board.
May 9 2023, 9:29 AM · Checklist, MITK (v2023.04)
floca moved T29571: [Segmentation] Changing groups on loaded multi-group segmentations crash from Backlog to Cycle on the MITK (v2023.04) board.
May 9 2023, 9:29 AM · Checklist, MITK (v2023.04)
floca moved T29591: [Segmentation] [Live Wire] Multiple reports of a crash due to image access out of bounds from Backlog to Cycle on the MITK (v2023.04) board.
May 9 2023, 9:29 AM · MITK (v2023.12), Checklist
kislinsk claimed T29589: [Segmentation] [Lasso] Add/subtract not in sync with radio buttons in GUI.
May 9 2023, 8:47 AM · Checklist, MITK (v2023.04)
kislinsk closed T29592: [Segmentation] 3D Region Growing still mentioned in user guide as Resolved.
May 9 2023, 8:47 AM · Checklist, MITK (v2023.04)
kislinsk added a comment to T29592: [Segmentation] 3D Region Growing still mentioned in user guide.

Deleted branch from rMITK MITK: bugfix/T29592-Remove3DRegionGrowingFromUserGUide.

May 9 2023, 8:47 AM · Checklist, MITK (v2023.04)
kislinsk added a comment to T29592: [Segmentation] 3D Region Growing still mentioned in user guide.

Pushed new branch to rMITK MITK: bugfix/T29592-Remove3DRegionGrowingFromUserGUide.

May 9 2023, 8:46 AM · Checklist, MITK (v2023.04)
kislinsk claimed T29592: [Segmentation] 3D Region Growing still mentioned in user guide.
May 9 2023, 8:44 AM · Checklist, MITK (v2023.04)
floca added a comment to T29591: [Segmentation] [Live Wire] Multiple reports of a crash due to image access out of bounds.

I have the feeling it is an race condition/timing problem.
I was able to recreate the problem also in release after rapidly clicking arround (at least 50 times, machine gun style). In debug I clicked for minutes without anything appening.

May 9 2023, 8:23 AM · MITK (v2023.12), Checklist
kislinsk closed T29593: [View Navigator] Use themed font as Resolved.
May 9 2023, 8:07 AM · Checklist, MITK (v2023.04)
kislinsk added a comment to T29593: [View Navigator] Use themed font.

Deleted branch from rMITK MITK: bugfix/T29593-FixViewNavigatorFont.

May 9 2023, 8:07 AM · Checklist, MITK (v2023.04)
kislinsk added a comment to T29593: [View Navigator] Use themed font.

Pushed new branch to rMITK MITK: bugfix/T29593-FixViewNavigatorFont.

May 9 2023, 8:06 AM · Checklist, MITK (v2023.04)
kislinsk triaged T29593: [View Navigator] Use themed font as Normal priority.
May 9 2023, 7:42 AM · Checklist, MITK (v2023.04)
kislinsk triaged T29592: [Segmentation] 3D Region Growing still mentioned in user guide as Normal priority.
May 9 2023, 7:28 AM · Checklist, MITK (v2023.04)
kislinsk triaged T29591: [Segmentation] [Live Wire] Multiple reports of a crash due to image access out of bounds as Unbreak Now! priority.
May 9 2023, 7:24 AM · MITK (v2023.12), Checklist
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