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Tue, Apr 30

floca added a project to T29582: [Segmentation] Error when pressing "Undo" after undoing all fill changes: Missing Info.
Tue, Apr 30, 11:15 PM · Missing Info, MITK (v2024.06), Checklist
floca closed T29076: [Segmentation] Pressing DEL should delete a label as Resolved by committing rMITK5e82cba3e412: - fixed T29076.
Tue, Apr 30, 4:07 PM · MITK (v2024.06), Checklist

Mon, Apr 29

floca added a revision to T29076: [Segmentation] Pressing DEL should delete a label: Restricted Differential Revision.
Mon, Apr 29, 12:32 PM · MITK (v2024.06), Checklist

Fri, Apr 26

floca closed T30400: [SEG] Preview in node selector is not correct. as Resolved by committing rMITK50fb9dd4b215: + fixed T30400.
Fri, Apr 26, 3:06 PM · MITK (v2024.06), Checklist
floca added a revision to T30400: [SEG] Preview in node selector is not correct.: Restricted Differential Revision.
Fri, Apr 26, 11:25 AM · MITK (v2024.06), Checklist
floca added a parent task for T30400: [SEG] Preview in node selector is not correct.: T30401: Thumbnail image generation should be moved to QmitkNodeDescriptor.
Fri, Apr 26, 9:59 AM · MITK (v2024.06), Checklist

Thu, Apr 25

floca triaged T30400: [SEG] Preview in node selector is not correct. as High priority.
Thu, Apr 25, 10:45 PM · MITK (v2024.06), Checklist

Mon, Apr 22

floca closed T28798: [Segmentation][MultiLabel][Utilities] UI is inconsistent / unstable as Resolved.
Mon, Apr 22, 5:40 PM · MITK (v2024.06), Checklist

Fri, Apr 19

floca closed T29502: [SEG] Optimizing MultiLabelImage widgets (context menue) action names + new actions?, a subtask of T29076: [Segmentation] Pressing DEL should delete a label, as Resolved.
Fri, Apr 19, 9:30 AM · MITK (v2024.06), Checklist
floca closed T28797: [Segmentation[MultiLabel][Utilities] Using 4D data with dynamic segmentations results in 3D data as Resolved.
Fri, Apr 19, 9:29 AM · MITK (v2024.06), Checklist

Thu, Apr 18

floca moved T29076: [Segmentation] Pressing DEL should delete a label from Backlog to Cycle on the MITK (v2024.06) board.
Thu, Apr 18, 4:40 PM · MITK (v2024.06), Checklist

Mon, Apr 15

floca closed T28796: [Segmentation][Utilities] Morphological Operations behave unexpectedly as Resolved by committing rMITK6b88efaafec0: Reworked morphological operation widget..
Mon, Apr 15, 6:40 PM · MITK (v2024.06), Checklist

Thu, Apr 11

floca added a revision to T28796: [Segmentation][Utilities] Morphological Operations behave unexpectedly: Restricted Differential Revision.
Thu, Apr 11, 4:51 PM · MITK (v2024.06), Checklist

Wed, Apr 10

floca added a revision to T28796: [Segmentation][Utilities] Morphological Operations behave unexpectedly: Restricted Differential Revision.
Wed, Apr 10, 3:14 PM · MITK (v2024.06), Checklist

Tue, Apr 9

a178n added a comment to T30268: [Checklist] Segmentation 3D Interpolation.

After testing:

  1. Contours are still in red. Not black.❌ -> Checklist updated should suffice.
  2. Interpolation is updated immediately. No need to reinit anymore. ✔
  3. Interpolation is updated immediately. No need to reinit anymore. ✔
  4. Dropdown is still in 3-Dimensional, not on Disabled. ❌ -> Checklist updated could suffice as fix.
  5. There is no contour. Dropdown on "Disabled" ❌
Tue, Apr 9, 12:25 PM · MITK (v2024.06), Checklist

Wed, Apr 3

floca claimed T28796: [Segmentation][Utilities] Morphological Operations behave unexpectedly.
Wed, Apr 3, 9:56 AM · MITK (v2024.06), Checklist

Tue, Apr 2

floca claimed T28798: [Segmentation][MultiLabel][Utilities] UI is inconsistent / unstable.
Tue, Apr 2, 7:01 PM · MITK (v2024.06), Checklist

Mar 20 2024

a178n assigned T29076: [Segmentation] Pressing DEL should delete a label to floca.
Mar 20 2024, 11:57 AM · MITK (v2024.06), Checklist
a178n removed a project from T29584: [Interpolation] Confirming 3D interpolation does not set mode to "disabled": Request for Discussion.

Discussion result - Change checklist

Mar 20 2024, 11:48 AM · MITK (v2024.06), Checklist

Mar 18 2024

floca added a project to T29105: [3D Surface Interpolation] 3D+t Interpolation Preview Crashes When Going Through Different Time Steps: Breaking Change.
Mar 18 2024, 5:45 PM · Breaking Change, MITK (v2024.06), Checklist

Mar 14 2024

floca moved T30268: [Checklist] Segmentation 3D Interpolation from Segmentation to Cycle on the MITK (v2024.06) board.
Mar 14 2024, 12:21 PM · MITK (v2024.06), Checklist

Mar 11 2024

floca moved T29584: [Interpolation] Confirming 3D interpolation does not set mode to "disabled" from Backlog to MITK Meeting on the Request for Discussion board.
Mar 11 2024, 11:02 AM · MITK (v2024.06), Checklist
floca added a project to T29584: [Interpolation] Confirming 3D interpolation does not set mode to "disabled": Request for Discussion.

I would change the checklist. With the multilabel support it makes sense to keep it open, if you have confirmed an interpolation, because you might directly go to the next label and confirm there as well...

Mar 11 2024, 11:02 AM · MITK (v2024.06), Checklist
floca added a revision to T29105: [3D Surface Interpolation] 3D+t Interpolation Preview Crashes When Going Through Different Time Steps: Restricted Differential Revision.
Mar 11 2024, 10:57 AM · Breaking Change, MITK (v2024.06), Checklist
floca closed T29105: [3D Surface Interpolation] 3D+t Interpolation Preview Crashes When Going Through Different Time Steps as Resolved.

With D900

Mar 11 2024, 10:56 AM · Breaking Change, MITK (v2024.06), Checklist
floca added a revision to T29583: [Interpolation] Interpolation is not triggered correctly: Restricted Differential Revision.
Mar 11 2024, 10:55 AM · MITK (v2024.06), Checklist
floca closed T29583: [Interpolation] Interpolation is not triggered correctly as Resolved.

With D900

Mar 11 2024, 10:55 AM · MITK (v2024.06), Checklist
floca reopened T29105: [3D Surface Interpolation] 3D+t Interpolation Preview Crashes When Going Through Different Time Steps as "Open".
Mar 11 2024, 10:54 AM · Breaking Change, MITK (v2024.06), Checklist
floca closed T29105: [3D Surface Interpolation] 3D+t Interpolation Preview Crashes When Going Through Different Time Steps as Resolved.
Mar 11 2024, 10:54 AM · Breaking Change, MITK (v2024.06), Checklist
floca added a comment to T30268: [Checklist] Segmentation 3D Interpolation.

@a178n now you can recheck it with develop

Mar 11 2024, 10:51 AM · MITK (v2024.06), Checklist

Feb 26 2024

kompan closed T28776: Perfusion DataFit View: Inconsistencies in the signal conversion using the turboFLASH sequence as Wontfix.

This task is closed as wontfix since we decided to not support this conversion method anymore (see https://phabricator.mitk.org/T30225).

Feb 26 2024, 11:38 AM · MITK (v2024.06), Checklist

Feb 22 2024

floca moved T29098: [3D Segmentation] UL Threshold Tool - 0 intensity value not include in slider range? from Cycle to Segmentation on the MITK (v2024.06) board.
Feb 22 2024, 5:01 PM · MITK (v2024.06), Restricted Project, Checklist
floca moved T30267: [Segmentation] Undo/Redo does not work for many aspects of segmentation from Backlog to Segmentation on the MITK (v2024.06) board.
Feb 22 2024, 4:58 PM · MITK (v2024.06), Checklist
floca added a comment to T30268: [Checklist] Segmentation 3D Interpolation.

@a178n could you please recheck the points as soon as D900/T30294 is landed?

Feb 22 2024, 4:55 PM · MITK (v2024.06), Checklist
floca moved T30268: [Checklist] Segmentation 3D Interpolation from Backlog to Segmentation on the MITK (v2024.06) board.
Feb 22 2024, 4:52 PM · MITK (v2024.06), Checklist
floca edited projects for T30268: [Checklist] Segmentation 3D Interpolation, added: MITK (v2024.06); removed MITK.
Feb 22 2024, 4:52 PM · MITK (v2024.06), Checklist

Feb 21 2024

floca added a comment to T30268: [Checklist] Segmentation 3D Interpolation.

recheck if the problems are still there if my interpolation changes are merged in.

Feb 21 2024, 12:03 PM · MITK (v2024.06), Checklist

Feb 19 2024

floca added a comment to T30267: [Segmentation] Undo/Redo does not work for many aspects of segmentation.

I assume that most problems stem from the following error/problem:

Feb 19 2024, 10:34 PM · MITK (v2024.06), Checklist
floca moved T29105: [3D Surface Interpolation] 3D+t Interpolation Preview Crashes When Going Through Different Time Steps from Backlog to Cycle on the MITK (v2024.06) board.
Feb 19 2024, 10:11 PM · Breaking Change, MITK (v2024.06), Checklist

Feb 17 2024

floca claimed T29105: [3D Surface Interpolation] 3D+t Interpolation Preview Crashes When Going Through Different Time Steps.
Feb 17 2024, 12:31 PM · Breaking Change, MITK (v2024.06), Checklist
floca claimed T29583: [Interpolation] Interpolation is not triggered correctly.
Feb 17 2024, 12:31 PM · MITK (v2024.06), Checklist

Dec 5 2023

kislinsk closed T30270: [Segmentation] Show Position Nodes in Interpolation not working for loaded mitk projects as Invalid.

I can't reproduce that "Show Position Nodes" does nothing and I don't see why it shouldn't as it affects all node siblings that have "isContourMarker" (BoolProperty) set, which is still the case. It is also expected that the interpolation mode is disabled. You can enable it again and then click on "Reinit Interpolation".

Dec 5 2023, 11:03 AM · Checklist, MITK
kislinsk closed T30275: [Segmentation] 3D Interpolation Show-Position-Nodes not updating sometimes as Wontfix.

Yes, as far as I know this does not lead to any problems, right? It would be possible to iterate through the slice and check for any remains each time the slice has been updates, but I guess it would be too much at the current state.

Dec 5 2023, 10:56 AM · Checklist, MITK
kislinsk edited projects for T29588: [MxN] Lock icon is unintuitive, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:39 AM · MITK (v2024.06), Checklist
kislinsk edited projects for T29596: Move out FAST checkbox from Advanced, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:39 AM · MITK (v2024.06), Request for Discussion, Checklist
kislinsk edited projects for T29595: Make nnUNet folder parsing more resilient to stray folders, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:39 AM · MITK (v2024.06), Request for Discussion, Checklist
kislinsk edited projects for T29582: [Segmentation] Error when pressing "Undo" after undoing all fill changes, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:39 AM · Missing Info, MITK (v2024.06), Checklist
kislinsk edited projects for T29352: Segmentation Options Checklist - "Create Smoothed Polygon" Seems Not to Work, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:39 AM · MITK (v2024.06), Cleared, Checklist
kislinsk edited projects for T29581: [Segmentation] Switch tool icon next to cursor when inverting via Ctrl, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:39 AM · MITK (v2024.06), Checklist
kislinsk edited projects for T29579: [Documentation] Help page of Pointset Interaction has no table of contents, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:39 AM · MITK (v2024.06), Checklist
kislinsk edited projects for T29594: Improve MITK help text for nnUNet tool, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:39 AM · MITK (v2024.06), Checklist, Request for Discussion
kislinsk edited projects for T29580: [Measurement] Unclear how to end drawing with some tools, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:39 AM · MITK (v2024.06), Checklist
kislinsk edited projects for T29098: [3D Segmentation] UL Threshold Tool - 0 intensity value not include in slider range?, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Restricted Project, Checklist
kislinsk edited projects for T28796: [Segmentation][Utilities] Morphological Operations behave unexpectedly, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Checklist
kislinsk edited projects for T28797: [Segmentation[MultiLabel][Utilities] Using 4D data with dynamic segmentations results in 3D data, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Checklist
kislinsk edited projects for T28798: [Segmentation][MultiLabel][Utilities] UI is inconsistent / unstable, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Checklist
kislinsk edited projects for T29584: [Interpolation] Confirming 3D interpolation does not set mode to "disabled", added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Checklist
kislinsk edited projects for T29583: [Interpolation] Interpolation is not triggered correctly, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Checklist
kislinsk edited projects for T29590: [Segmentation] [Erase] Erasing everything of the selected label when clicking on background is surprising, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Checklist
kislinsk edited projects for T29578: [Segmentation] Removing last selected region in picking tool does not update preview, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Checklist
kislinsk edited projects for T29597: TotalSeg didn't remember python environment, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Checklist
kislinsk edited projects for T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary", added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Checklist, Request for Discussion
kislinsk edited projects for T29090: [3D Segmentation] Threshold tool preview draws contours in green and not in the active label color. , added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Request for Discussion, Checklist
kislinsk edited projects for T28791: [Segmentation][Multilabel][Options]"Create polygon model" issues for large images, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Checklist
kislinsk edited projects for T29105: [3D Surface Interpolation] 3D+t Interpolation Preview Crashes When Going Through Different Time Steps, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · Breaking Change, MITK (v2024.06), Checklist
kislinsk edited projects for T29076: [Segmentation] Pressing DEL should delete a label, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Checklist
kislinsk edited projects for T28776: Perfusion DataFit View: Inconsistencies in the signal conversion using the turboFLASH sequence , added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Checklist
kislinsk edited projects for T28785: Levelwindow UX proposals/comments, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Checklist, Missing Info, Request for Discussion
kislinsk edited projects for T29570: [Preferences] Render window decoration color not immediately updated in Image Navigator, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Checklist
kislinsk edited projects for T29337: Global Reinit HotKey functionality not there in Mac OSX, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Cleared, Checklist
kislinsk edited projects for T30257: Changing opacity messes up rendering order, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Checklist
kislinsk edited projects for T30267: [Segmentation] Undo/Redo does not work for many aspects of segmentation, added: MITK (v2024.06); removed MITK (v2023.12).
Dec 5 2023, 10:38 AM · MITK (v2024.06), Checklist

Nov 30 2023

kislinsk closed T30263: [Segmentation] SAM tool issue with single slice (2D) as Resolved.
Nov 30 2023, 12:07 AM · Checklist, MITK (v2023.12)
kislinsk added a comment to T30263: [Segmentation] SAM tool issue with single slice (2D).

Deleted branch from rMITK MITK: feature/T30263-sam-2d-bugfix.

Nov 30 2023, 12:07 AM · Checklist, MITK (v2023.12)

Nov 27 2023

s434n closed T30258: [Statistics] Lines across different geometries can cause crash when analyzed with image as Resolved by committing rMITK57be9c209320: [Statistics] Filter planar figures in data selection by control point position.
Nov 27 2023, 12:13 PM · Checklist, MITK (v2023.12)

Nov 22 2023

a178n added a project to T30268: [Checklist] Segmentation 3D Interpolation: Checklist.
Nov 22 2023, 10:43 AM · MITK (v2024.06), Checklist
a178n added a project to T30275: [Segmentation] 3D Interpolation Show-Position-Nodes not updating sometimes: Checklist.
Nov 22 2023, 10:43 AM · Checklist, MITK
a178n added a project to T30270: [Segmentation] Show Position Nodes in Interpolation not working for loaded mitk projects: Checklist.
Nov 22 2023, 10:43 AM · Checklist, MITK
a178n added a project to T30263: [Segmentation] SAM tool issue with single slice (2D): Checklist.
Nov 22 2023, 10:36 AM · Checklist, MITK (v2023.12)
kislinsk triaged T29588: [MxN] Lock icon is unintuitive as Wishlist priority.
Nov 22 2023, 10:30 AM · MITK (v2024.06), Checklist

Nov 21 2023

s434n merged task T28800: [Segmentation] Threshold tool updates after each digit if typed in manually into Restricted Maniphest Task.
Nov 21 2023, 9:48 AM · MITK (v2023.12), Checklist, Request for Discussion

Nov 20 2023

s434n added a revision to T30258: [Statistics] Lines across different geometries can cause crash when analyzed with image: Restricted Differential Revision.
Nov 20 2023, 5:19 PM · Checklist, MITK (v2023.12)
s434n claimed T30258: [Statistics] Lines across different geometries can cause crash when analyzed with image.
Nov 20 2023, 4:00 PM · Checklist, MITK (v2023.12)
kislinsk added a comment to T30262: [PointSet interaction] Picking/hovering in 3-d render window highlights wrong points when in close proximity to other points.

Deleted branch from rMITK MITK: bugfix/T30262-SelectClosestPointInsteadOfAnyClosePoint.

Nov 20 2023, 2:39 PM · Checklist, MITK (v2023.12)
kislinsk closed T30262: [PointSet interaction] Picking/hovering in 3-d render window highlights wrong points when in close proximity to other points as Resolved by committing rMITKe121425d0e90: [PointSet interaction] Correctly determine the closest point to a certain….
Nov 20 2023, 2:39 PM · Checklist, MITK (v2023.12)
kislinsk claimed T30262: [PointSet interaction] Picking/hovering in 3-d render window highlights wrong points when in close proximity to other points.
Nov 20 2023, 1:21 PM · Checklist, MITK (v2023.12)
kislinsk added a revision to T30262: [PointSet interaction] Picking/hovering in 3-d render window highlights wrong points when in close proximity to other points: Restricted Differential Revision.
Nov 20 2023, 12:07 PM · Checklist, MITK (v2023.12)
kislinsk added a comment to T30262: [PointSet interaction] Picking/hovering in 3-d render window highlights wrong points when in close proximity to other points.

Pushed new branch to rMITK MITK: bugfix/T30262-SelectClosestPointInsteadOfAnyClosePoint.

Nov 20 2023, 11:58 AM · Checklist, MITK (v2023.12)
kislinsk added a comment to T30262: [PointSet interaction] Picking/hovering in 3-d render window highlights wrong points when in close proximity to other points.

My suspicion is that the reaction on hovering is a two-step process. As soon as the mouse pointer hovers over a sphere, I guess a search is started to check which point is closest to the mouse pointer but prematurely discontinued as soon as any point is "close enough" to the mouse pointer, leaving out other candidates that are actually closer.

Nov 20 2023, 11:32 AM · Checklist, MITK (v2023.12)
kislinsk added a comment to T30267: [Segmentation] Undo/Redo does not work for many aspects of segmentation.

In particular working with different groups seems to have impact on the amount of undo/redo shenanigans.

Nov 20 2023, 10:58 AM · MITK (v2024.06), Checklist
kislinsk added subtasks for T30267: [Segmentation] Undo/Redo does not work for many aspects of segmentation: T29582: [Segmentation] Error when pressing "Undo" after undoing all fill changes, T29562: [GrowCut] "Undo" only changes slices with seed images.
Nov 20 2023, 10:50 AM · MITK (v2024.06), Checklist
kislinsk added a parent task for T29582: [Segmentation] Error when pressing "Undo" after undoing all fill changes: T30267: [Segmentation] Undo/Redo does not work for many aspects of segmentation.
Nov 20 2023, 10:50 AM · Missing Info, MITK (v2024.06), Checklist
kislinsk triaged T30267: [Segmentation] Undo/Redo does not work for many aspects of segmentation as Normal priority.
Nov 20 2023, 10:49 AM · MITK (v2024.06), Checklist
kislinsk triaged T30262: [PointSet interaction] Picking/hovering in 3-d render window highlights wrong points when in close proximity to other points as Low priority.
Nov 20 2023, 10:07 AM · Checklist, MITK (v2023.12)

Nov 17 2023

s434n triaged T30258: [Statistics] Lines across different geometries can cause crash when analyzed with image as High priority.
Nov 17 2023, 4:32 PM · Checklist, MITK (v2023.12)
s434n triaged T30257: Changing opacity messes up rendering order as Normal priority.
Nov 17 2023, 2:33 PM · MITK (v2024.06), Checklist

Oct 11 2023

floca added a project to T29098: [3D Segmentation] UL Threshold Tool - 0 intensity value not include in slider range?: Restricted Project.
Oct 11 2023, 11:55 AM · MITK (v2024.06), Restricted Project, Checklist
floca moved T29597: TotalSeg didn't remember python environment from Segmentation to Cycle on the MITK (v2023.12) board.
Oct 11 2023, 10:59 AM · MITK (v2024.06), Checklist

Aug 1 2023

s434n closed T29591: [Segmentation] [Live Wire] Multiple reports of a crash due to image access out of bounds as Resolved.
Aug 1 2023, 12:31 PM · MITK (v2023.12), Checklist

Jul 25 2023

a178n closed T29569: [Checklist] Update TotalSegmentator & nnUNet checklist as Resolved.

Checklists updated

Jul 25 2023, 11:46 AM · MITK (v2023.12), Checklist
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