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Nov 20 2020

kalali added a member for SIDT: a178n.
Nov 20 2020, 11:43 AM
kalali lowered the priority of T24770: WeakPointer: Exception on OnDeleteEvent when closing MITK workbench from High to Normal.
Nov 20 2020, 11:11 AM · Auto-closed, MITK
kalali removed a project from T24770: WeakPointer: Exception on OnDeleteEvent when closing MITK workbench: Request for Discussion.
Nov 20 2020, 11:11 AM · Auto-closed, MITK
eisenman committed rCHALLENGER43ddfa6a6549: Rename tutorial.Rmd to quickstart.Rmd (authored by eisenman).
Rename tutorial.Rmd to quickstart.Rmd
Nov 20 2020, 8:54 AM

Nov 19 2020

eisenman committed rCHALLENGERa1388721b6f7: Fix typo (authored by eisenman).
Fix typo
Nov 19 2020, 10:09 PM
kislinsk edited the content of Merging into master Branch.
Nov 19 2020, 4:44 PM
kislinsk closed T27977: 2020 Week 47 (Mid November) as Resolved.
Nov 19 2020, 4:42 PM · MITK
kislinsk edited the content of Changelog.
Nov 19 2020, 4:41 PM · MITK
kislinsk added a comment to T27977: 2020 Week 47 (Mid November).

Deleted branch release/T27977-2020-Week-47.

Nov 19 2020, 4:41 PM · MITK
kislinsk committed rMITK6ab9b7d58bbe: 2020 Week 47 (Mid November) (authored by kislinsk).
2020 Week 47 (Mid November)
Nov 19 2020, 4:40 PM
kislinsk committed rMITK13624124f8db: Merge branch 'master' into develop (authored by kislinsk).
Merge branch 'master' into develop
Nov 19 2020, 4:40 PM
kislinsk edited the content of 2020 Week 47 (Mid November).
Nov 19 2020, 4:17 PM
kislinsk edited the content of 2020 Week 47 (Mid November).
Nov 19 2020, 4:16 PM
kislinsk edited the content of 2020 Week 47 (Mid November).
Nov 19 2020, 4:15 PM
kislinsk edited the content of 2020 Week 47 (Mid November).
Nov 19 2020, 4:14 PM
kislinsk renamed T27977: 2020 Week 47 (Mid November) from 2020 Week 47 (Late September) to 2020 Week 47 (Mid November).
Nov 19 2020, 3:15 PM · MITK
kislinsk edited the content of 2020 Week 47 (Mid November).
Nov 19 2020, 3:15 PM
kislinsk renamed 2020 Week 47 (Mid November) from 2020 Week 47 (Late September) to 2020 Week 47 (Mid November).
Nov 19 2020, 3:14 PM
kislinsk added a comment to T27977: 2020 Week 47 (Mid November).

Pushed new branch release/T27977-2020-Week-47.

Nov 19 2020, 2:50 PM · MITK
kislinsk triaged T27977: 2020 Week 47 (Mid November) as Normal priority.
Nov 19 2020, 2:49 PM · MITK
kislinsk renamed 2020 Week 47 (Mid November) from https://phabricator.mitk.org/w/mitk/changelog/2020.39/ to 2020 Week 47 (Late September).
Nov 19 2020, 2:48 PM
kislinsk created an object: 2020 Week 47 (Mid November).
Nov 19 2020, 2:48 PM
kislinsk removed a member for Kaapana (internal): kislinsk.
Nov 19 2020, 1:04 PM
kislinsk removed a watcher for Kaapana (internal): • hettich.
Nov 19 2020, 1:04 PM
kislinsk removed a member for Kaapana (internal): • hettich.
Nov 19 2020, 1:04 PM
kislinsk closed T27975: Speed up more tests as Resolved.
Nov 19 2020, 12:37 PM · MITK
kislinsk added a comment to T27975: Speed up more tests.

Deleted branch bugfix/T27975-SpeedUpTests.

Nov 19 2020, 12:37 PM · MITK
kislinsk committed rMITK52b82c433ae4: Set label set image dimensions according to image in MITK-Data (authored by kislinsk).
Set label set image dimensions according to image in MITK-Data
Nov 19 2020, 12:36 PM
kislinsk committed rMITK431f068c603d: Merge branch 'bugfix/T27975-SpeedUpTests' into develop (authored by kislinsk).
Merge branch 'bugfix/T27975-SpeedUpTests' into develop
Nov 19 2020, 12:36 PM
kislinsk committed rMITK9888761d67c1: Speed up some tests (authored by kislinsk).
Speed up some tests
Nov 19 2020, 11:38 AM
kislinsk committed rMITK6d9cb6aa7277: Merge branch 'bugfix/T27975-SpeedUpTests' into develop (authored by kislinsk).
Merge branch 'bugfix/T27975-SpeedUpTests' into develop
Nov 19 2020, 11:38 AM
kislinsk added a comment to T27975: Speed up more tests.

Pushed new branch bugfix/T27975-SpeedUpTests.

Nov 19 2020, 11:37 AM · MITK
kislinsk committed rMD706afb254e12: Reduce test data complexity (authored by kislinsk).
Reduce test data complexity
Nov 19 2020, 11:35 AM
kislinsk triaged T27975: Speed up more tests as Normal priority.
Nov 19 2020, 11:33 AM · MITK
kislinsk added a comment to T27974: Sarah requires an MITK installer containing the mitk file converter.

Maybe the one from our Nightlies is sufficient?
https://ci.mitk.org/job/MITK/job/Nightly/job/Ubuntu%2018.04/ws/build/MITK-build/

Nov 19 2020, 11:32 AM · Missing Info, MITK
neher triaged T27974: Sarah requires an MITK installer containing the mitk file converter as Unbreak Now! priority.
Nov 19 2020, 10:25 AM · Missing Info, MITK
kalali triaged T27973: Setup non-development system for MITK installer tests as Normal priority.
Nov 19 2020, 10:01 AM · Request for Discussion, Restricted Project, CI

Nov 18 2020

kislinsk closed T27972: Hint Qt's OpenSSL path to find_package(OpenSSL) on Windows as Resolved.
Nov 18 2020, 10:59 PM · MITK
kislinsk added a comment to T27972: Hint Qt's OpenSSL path to find_package(OpenSSL) on Windows.

Deleted branch feature/T27972-OpenSSLHint.

Nov 18 2020, 10:59 PM · MITK
kislinsk committed rMITK7926dce8327f: Hint Qt's OpenSSL path to find_package(OpenSSL) (authored by kislinsk).
Hint Qt's OpenSSL path to find_package(OpenSSL)
Nov 18 2020, 10:58 PM
kislinsk committed rMITK5aa3f00fd03e: Merge branch 'feature/T27972-OpenSSLHint' into develop (authored by kislinsk).
Merge branch 'feature/T27972-OpenSSLHint' into develop
Nov 18 2020, 10:58 PM
kislinsk added a comment to T27972: Hint Qt's OpenSSL path to find_package(OpenSSL) on Windows.

Pushed new branch feature/T27972-OpenSSLHint.

Nov 18 2020, 10:58 PM · MITK
kislinsk triaged T27972: Hint Qt's OpenSSL path to find_package(OpenSSL) on Windows as Low priority.
Nov 18 2020, 10:54 PM · MITK
kislinsk added a comment to T27952: Reduce LabelSetTest and ImageGeneratorTest execution times.

Deleted branch bugfix/T27952-FixLabelSetTest.

Nov 18 2020, 8:32 PM · MITK (v2021.02)
kislinsk committed rMITKd76d2dc174b0: Reduce number of labels in test label set (authored by kislinsk).
Reduce number of labels in test label set
Nov 18 2020, 8:32 PM
kislinsk committed rMITK28f981c7cd55: Fix comparison between signed and unsigned integers (authored by kislinsk).
Fix comparison between signed and unsigned integers
Nov 18 2020, 8:32 PM
kislinsk committed rMITKb72e8c02f3a3: Reduce test image dimensions (authored by kislinsk).
Reduce test image dimensions
Nov 18 2020, 8:32 PM
kislinsk committed rMITK1198ee0afe28: Reduce execution times of longest tests (authored by kislinsk).
Reduce execution times of longest tests
Nov 18 2020, 8:32 PM
kislinsk closed T27952: Reduce LabelSetTest and ImageGeneratorTest execution times as Resolved by committing rMITK1198ee0afe28: Reduce execution times of longest tests.
Nov 18 2020, 8:32 PM · MITK (v2021.02)
eisenman created T27971: Provide code for podium plot in vignette "Visualizations".
Nov 18 2020, 12:36 PM · challengeR (v1.0)
kislinsk triaged T27969: Toggling "Show cross hair" in a render window menu does not update the check state in other render window menus as High priority.
Nov 18 2020, 9:21 AM · Noteworthy, MITK (v2021.02)
kislinsk added a comment to T27955: Debug vtkOpenGLRenderWindow::SupportsOpenGL() on Windows CI clients.

Deleted branch bugfix/T27955-RenderingTestsSerialRun.

Nov 18 2020, 12:08 AM · Noteworthy, MITK (v2021.02)
kislinsk committed rMITK8f27c24e2bd3: Automatically add RUN_SERIAL property to rendering tests (authored by kislinsk).
Automatically add RUN_SERIAL property to rendering tests
Nov 18 2020, 12:08 AM
kislinsk committed rMITKfacc43e1c260: Merge branch 'bugfix/T27955-RenderingTestsSerialRun' into develop (authored by kislinsk).
Merge branch 'bugfix/T27955-RenderingTestsSerialRun' into develop
Nov 18 2020, 12:08 AM
kislinsk added a comment to T27955: Debug vtkOpenGLRenderWindow::SupportsOpenGL() on Windows CI clients.

Pushed new branch bugfix/T27955-RenderingTestsSerialRun.

Nov 18 2020, 12:07 AM · Noteworthy, MITK (v2021.02)

Nov 17 2020

kislinsk renamed T27952: Reduce LabelSetTest and ImageGeneratorTest execution times from Reduce LabelSetTest execution time to Reduce LabelSetTest and ImageGeneratorTest execution times.
Nov 17 2020, 11:18 PM · MITK (v2021.02)
kislinsk renamed T27952: Reduce LabelSetTest and ImageGeneratorTest execution times from Investigate LabelSetTest to Reduce LabelSetTest execution time.
Nov 17 2020, 10:57 PM · MITK (v2021.02)
gaoh added a comment to T27968: CTP gets stuck on large import.

The CTP thread responsible for sending the data to the PACs crashed:

Nov 17 2020, 3:57 PM · Kaapana (internal)
nolden created T27968: CTP gets stuck on large import.
Nov 17 2020, 3:50 PM · Kaapana (internal)
menjivar added a member for IMSY: m700r.
Nov 17 2020, 3:36 PM
kislinsk added a revision to T27952: Reduce LabelSetTest and ImageGeneratorTest execution times: Unknown Object (Differential Revision).
Nov 17 2020, 2:47 PM · MITK (v2021.02)
kislinsk added a comment to T27952: Reduce LabelSetTest and ImageGeneratorTest execution times.

Pushed new branch bugfix/T27952-FixLabelSetTest.

Nov 17 2020, 2:46 PM · MITK (v2021.02)
kislinsk added a comment to T27952: Reduce LabelSetTest and ImageGeneratorTest execution times.

1.5 reasons:

  • mitk::LabelSet::AddLabel() takes a pretty long time to complete while it fiddles around with an std::map
  • Not only does every test unnecessarily initialize a label set with 200 labels, but one test adds another 65535 labels to test the maximum allowed number of labels
Nov 17 2020, 2:11 PM · MITK (v2021.02)
eisenman committed rCHALLENGER76a9c34c5ff3: Revise readme file (authored by eisenman).
Revise readme file
Nov 17 2020, 11:19 AM
eisenman committed rCHALLENGER79a2a6d3e71f: Use DKFZ logo with higher resolution (authored by eisenman).
Use DKFZ logo with higher resolution
Nov 17 2020, 11:19 AM
kislinsk closed T27953: Write user guide for rewritten Remeshing view as Resolved.
Nov 17 2020, 10:56 AM · MITK (v2021.02)
kahl added a comment to T27564: [Segmentation] Integrate deep learning methods for Segmentation in MITK.

Deleted branch feature/T27564-integrate-deeplearning-segmentation-V2.

Nov 17 2020, 10:54 AM · MITK
kahl added a comment to T27564: [Segmentation] Integrate deep learning methods for Segmentation in MITK.

Deleted branch feature/T27564-integrate-deeplearning-segmentation-evaluation.

Nov 17 2020, 10:54 AM · MITK
kahl added a comment to T27564: [Segmentation] Integrate deep learning methods for Segmentation in MITK.

Deleted branch feature/T27564-integrate-deeplearning-segmentation.

Nov 17 2020, 10:54 AM · MITK
kahl added a comment to T27500: Use Python/C-API for execution of Python Code with MITK-Python-Service.

Deleted branch feature/T27500-use-PythonCApi-in-python-service-V2.

Nov 17 2020, 10:54 AM · MITK
kahl added a comment to T27500: Use Python/C-API for execution of Python Code with MITK-Python-Service.

Deleted branch feature/T27500-use-PythonCApi-in-python-service.

Nov 17 2020, 10:54 AM · MITK
kislinsk added a comment to T27953: Write user guide for rewritten Remeshing view.

Deleted branch bugfix/T27953-RemeshingDocumentation.

Nov 17 2020, 10:52 AM · MITK (v2021.02)
kislinsk committed rMITKca96979ab501: Rewrite Remeshing view documentation (authored by kislinsk).
Rewrite Remeshing view documentation
Nov 17 2020, 10:52 AM
kislinsk committed rMITK9a3b26c4e275: Merge branch 'bugfix/T27953-RemeshingDocumentation' into develop (authored by kislinsk).
Merge branch 'bugfix/T27953-RemeshingDocumentation' into develop
Nov 17 2020, 10:52 AM
kislinsk added a comment to T27953: Write user guide for rewritten Remeshing view.

Pushed new branch bugfix/T27953-RemeshingDocumentation.

Nov 17 2020, 10:51 AM · MITK (v2021.02)

Nov 16 2020

kislinsk added a comment to T27955: Debug vtkOpenGLRenderWindow::SupportsOpenGL() on Windows CI clients.

Deleted branch bugfix/T27955-FixRenderingTestHelper.

Nov 16 2020, 9:18 PM · Noteworthy, MITK (v2021.02)
kislinsk added a comment to T27952: Reduce LabelSetTest and ImageGeneratorTest execution times.

Yes, eventually the test times out. But even if it would "fix" the test to increase this value, individual unit tests should aim to last not longer than around a second, at maximum a few seconds.

Nov 16 2020, 7:39 PM · MITK (v2021.02)
eisenman moved T27930: Revise examples given in the vignettes from Backlog to In Progress on the challengeR (v1.0) board.
Nov 16 2020, 6:30 PM · challengeR (v1.0)
eisenman moved T27929: Provide documentation for plot functions from In Progress to Done on the challengeR (v1.0) board.

The plot functions that are used in the report have Roxygen documentation now. There's also a vignette called "Visualizations" that shows and explains the plots along with the corresponding plot function.

Nov 16 2020, 5:52 PM · challengeR (v1.0)
eisenman committed rCHALLENGER248ff75fd785: Merge branch 'feature/T27929-ProvideVisualizationOverview' into develop (authored by eisenman).
Merge branch 'feature/T27929-ProvideVisualizationOverview' into develop
Nov 16 2020, 5:49 PM
eisenman committed rCHALLENGER5ee4b2aa921e: Add man pages (authored by eisenman).
Add man pages
Nov 16 2020, 5:40 PM
eisenman committed rCHALLENGER99ffad44f9e7: Clean up (authored by eisenman).
Clean up
Nov 16 2020, 5:32 PM
eisenman committed rCHALLENGER5ff8bf846b1d: Cite paper (authored by eisenman).
Cite paper
Nov 16 2020, 5:32 PM
eisenman committed rCHALLENGER31a95a501028: Add documentation for cluster dendrogram (authored by eisenman).
Add documentation for cluster dendrogram
Nov 16 2020, 5:32 PM
eisenman committed rCHALLENGER2c54ff2dfae3: Reference file after rename (authored by eisenman).
Reference file after rename
Nov 16 2020, 5:21 PM
eisenman committed rCHALLENGER701786916e7e: Rename reportMultiple.Rmd to report.Rmd (authored by eisenman).
Rename reportMultiple.Rmd to report.Rmd
Nov 16 2020, 5:21 PM
eisenman committed rCHALLENGER85d6351208ab: Add documentation for significance map (authored by eisenman).
Add documentation for significance map
Nov 16 2020, 4:56 PM
eisenman committed rCHALLENGER1e7fcd95307f: Rename wrapper.R to rankingMethods.R (authored by eisenman).
Rename wrapper.R to rankingMethods.R
Nov 16 2020, 4:43 PM
eisenman committed rCHALLENGERddcfcd69bf81: Add documentation for consensus (authored by eisenman).
Add documentation for consensus
Nov 16 2020, 4:41 PM
floca added a comment to T27952: Reduce LabelSetTest and ImageGeneratorTest execution times.

Could it be that the test time out time is 600 sec? Because in the last month all tests runs of LabelSetTest with worked (as long as the duration was below 600 sec). All failed tests took longer then 600 sec.
For what ever reason under win the test is relativaly fast ~150-200 sec. Under linux/mac it is lurking arround 590 sec +- 25...

Nov 16 2020, 4:33 PM · MITK (v2021.02)
eisenman committed rCHALLENGER9a3447d1eeb0: Rename significancePlot.R to significanceMap.R (authored by eisenman).
Rename significancePlot.R to significanceMap.R
Nov 16 2020, 4:28 PM
eisenman committed rCHALLENGER1b3e79568328: Add documentation for violin plot (authored by eisenman).
Add documentation for violin plot
Nov 16 2020, 2:27 PM
eisenman committed rCHALLENGER1bbb649283e5: Add documentation for stability plot functions (authored by eisenman).
Add documentation for stability plot functions
Nov 16 2020, 2:19 PM
eisenman committed rCHALLENGER082a9fd7ed02: Test that stabilityByAlgorithm returns the correct number of plots (authored by eisenman).
Test that stabilityByAlgorithm returns the correct number of plots
Nov 16 2020, 2:19 PM
eisenman committed rCHALLENGER1b86559604af: Test that blob plot for visualizing ranking stability across tasks returns one… (authored by eisenman).
Test that blob plot for visualizing ranking stability across tasks returns one…
Nov 16 2020, 2:19 PM
eisenman created T27963: Task names printed as R output in Sec. 3.1 of multi-task report.
Nov 16 2020, 10:52 AM · challengeR (v1.0)
kalali moved T26854: Unattended Qt installation from Restricted Project Column to Restricted Project Column on the Restricted Project board.
Nov 16 2020, 10:13 AM · CI, Restricted Project, MITK
kalali moved T26854: Unattended Qt installation from Backlog to Done on the CI board.
Nov 16 2020, 10:13 AM · CI, Restricted Project, MITK
kislinsk merged task T26854: Unattended Qt installation into Restricted Maniphest Task.
Nov 16 2020, 10:12 AM · CI, Restricted Project, MITK
kislinsk added a comment to T26854: Unattended Qt installation.

Yes. In fact, this task can already be closed as it doesn't work anymore. :-)

Nov 16 2020, 10:11 AM · CI, Restricted Project, MITK
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