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Aug 5 2020

kislinsk added a parent task for T27652: CMake/mitkInstallRules.cmake set invalid install directory for QtWebEngine resources and translations in Linux: T27196: Rewrite packaging of MITK.
Aug 5 2020, 8:52 PM · Auto-closed, MITK
kislinsk added a subtask for T27196: Rewrite packaging of MITK: T27652: CMake/mitkInstallRules.cmake set invalid install directory for QtWebEngine resources and translations in Linux.
Aug 5 2020, 8:52 PM · MITK (v2024.06), Cleared
kislinsk triaged T27652: CMake/mitkInstallRules.cmake set invalid install directory for QtWebEngine resources and translations in Linux as Low priority.

Thanks for the report. The complete packaging will be rewritten soon. Until then we strongly recommend to not use system Qt but to install Qt (version 5.12.9 is a good choice) with the official qt installer and to use Qt5_DIR to hint our CMake scripts to the lib/cmake/Qt5 directory. Don't forget to install the optional packages Qt Web Engine and Qt Script.

Aug 5 2020, 8:51 PM · Auto-closed, MITK
jmcuadra created T27652: CMake/mitkInstallRules.cmake set invalid install directory for QtWebEngine resources and translations in Linux.
Aug 5 2020, 2:31 PM · Auto-closed, MITK
kislinsk archived MICO.
Aug 5 2020, 2:21 PM
kislinsk renamed MIC from MIA to MIC.
Aug 5 2020, 2:21 PM
floca closed T27649: [Segmentation] How should tools listen to time changes as Resolved.
Aug 5 2020, 11:57 AM · MITK (v2021.02)
floca removed a project from T27649: [Segmentation] How should tools listen to time changes: Request for Discussion.

Discussion result: we go for #2 and refactor #1 out of the tools.

Aug 5 2020, 11:57 AM · MITK (v2021.02)
neher closed T27651: error loading .bvec files as Resolved.
Aug 5 2020, 11:39 AM · MITK Diffusion
neher committed rMITKDIFF1e8c9a8df972: Merge branch 'T27651-BvecFiles' (authored by neher).
Merge branch 'T27651-BvecFiles'
Aug 5 2020, 11:38 AM
neher committed rMITKDIFF010fb9d4e80b: Loading bvec files is now possible (authored by neher).
Loading bvec files is now possible
Aug 5 2020, 11:38 AM
neher added a comment to T27651: error loading .bvec files.

Pushed new branch T27651-BvecFiles.

Aug 5 2020, 11:38 AM · MITK Diffusion
neher triaged T27651: error loading .bvec files as Normal priority.
Aug 5 2020, 11:37 AM · MITK Diffusion
floca moved T27143: Matchpoint Registration Evaluator- Colorblend Bug from Restricted Project Column to Restricted Project Column on the Restricted Project board.
Aug 5 2020, 11:22 AM · Cleared, MITK (v2021.02), Restricted Project
floca moved T27545: Extract MITK Workbench intro part from Restricted Project Column to Restricted Project Column on the Restricted Project board.
Aug 5 2020, 11:22 AM · Noteworthy, Restricted Project, Restricted Project, MITK
floca moved T27649: [Segmentation] How should tools listen to time changes from Backlog to Segmentation on the MITK (v2021.02) board.
Aug 5 2020, 11:10 AM · MITK (v2021.02)
floca closed T27621: [Segmentation] 3D Threshold / UL Threshold does not use a timestep != 0 for static masks, a subtask of T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation, as Resolved.
Aug 5 2020, 11:10 AM · MITK (v2021.10), Missing Info, Restricted Project
floca closed T27621: [Segmentation] 3D Threshold / UL Threshold does not use a timestep != 0 for static masks as Resolved.
Aug 5 2020, 11:10 AM · Restricted Project, Cleared, MITK (v2021.02)
floca closed T27622: [Segmentation] Make 3D Threshold / UL Threshold only for on a single timestep for a dynamic mask, a subtask of T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation, as Resolved.
Aug 5 2020, 11:10 AM · MITK (v2021.10), Missing Info, Restricted Project
floca closed T27622: [Segmentation] Make 3D Threshold / UL Threshold only for on a single timestep for a dynamic mask as Resolved.
Aug 5 2020, 11:10 AM · Restricted Project, Cleared, MITK (v2021.02)
gaoh added a member for SIDT: s669m.
Aug 5 2020, 10:22 AM
gaoh added a member for Kaapana (internal): s669m.
Aug 5 2020, 10:21 AM
floca committed rMITK08619e4fc4b8: T27621/T27622 - Corrected threshold tools (authored by floca).
T27621/T27622 - Corrected threshold tools
Aug 5 2020, 10:20 AM
floca committed rMITK5f96821de19f: Fixed review remarks. (authored by floca).
Fixed review remarks.
Aug 5 2020, 10:20 AM
floca committed rMITKc03ca0616159: Handeled unused variables (gcc error) (authored by floca).
Handeled unused variables (gcc error)
Aug 5 2020, 10:20 AM
floca committed rMITK4408a8ff26b0: Removed unnecessary call (authored by floca).
Removed unnecessary call
Aug 5 2020, 10:20 AM
floca committed rMITK703af31f270f: Refactored threshold tools to remove redundant code (authored by floca).
Refactored threshold tools to remove redundant code
Aug 5 2020, 10:20 AM
floca committed rMITKb9bfb2ec4e41: Corrected mitk::AutoSegmentationTool::GetTargetSegmentationNode() to use the… (authored by floca).
Corrected mitk::AutoSegmentationTool::GetTargetSegmentationNode() to use the…
Aug 5 2020, 10:20 AM
floca committed rMITK179b53dfa7bb: Improved usablility of threshold tools (authored by floca).
Improved usablility of threshold tools
Aug 5 2020, 10:20 AM
floca committed rMITK13895dc2f6b7: first draft of threshold tool that behaves correctly time point aware now. (authored by floca).
first draft of threshold tool that behaves correctly time point aware now.
Aug 5 2020, 10:20 AM
floca committed rMITK83f54f57a53c: Add (event) support for current time point change to toolmanager (authored by floca).
Add (event) support for current time point change to toolmanager
Aug 5 2020, 10:20 AM
kompan added a revision to T27619: MR Perfusion: Use model fit result relation rules for predicate definition: Unknown Object (Differential Revision).
Aug 5 2020, 9:51 AM · Cleared, MITK (v2021.02)
neher closed T27647: Fix dicom module renaming and rest module dep as Resolved.
Aug 5 2020, 8:21 AM · MITK Diffusion
neher committed rMITKDIFF4bd1b5fe32b7: Merge branch 'T27647-DicomModuleFix' (authored by neher).
Merge branch 'T27647-DicomModuleFix'
Aug 5 2020, 8:19 AM
neher committed rMITKDIFF29354b30dfdb: add dev breaking changes (authored by neher).
add dev breaking changes
Aug 5 2020, 8:18 AM
neher added a comment to T27647: Fix dicom module renaming and rest module dep.

Pushed new branch T27647-DicomModuleFix.

Aug 5 2020, 8:18 AM · MITK Diffusion

Aug 4 2020

kislinsk added a comment to T25882: Rewrite dashboard script for CDash 2.6.

Pushed new branch bugfix/T25882-RewriteDashboardScript.

Aug 4 2020, 10:07 PM · CI, MITK (v2021.02), Restricted Project
floca triaged T27649: [Segmentation] How should tools listen to time changes as Unbreak Now! priority.
Aug 4 2020, 9:41 PM · MITK (v2021.02)
floca reopened T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation as "Open".

@thomass / @kalali : what i just realized. Did you also checked the automated 2D tools (like fast marching 2D)? Or only the 3D tools?

Aug 4 2020, 9:01 PM · MITK (v2021.10), Missing Info, Restricted Project
floca claimed T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images.
Aug 4 2020, 8:56 PM · MITK (v2021.02), Bugzilla
floca moved T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images from Backlog to Segmentation on the MITK (v2021.02) board.
Aug 4 2020, 8:45 PM · MITK (v2021.02), Bugzilla
floca raised the priority of T18436: [Segmentation] Fast Marching 3D Tool only supported for first time step in 4D images from Normal to High.
Aug 4 2020, 8:45 PM · MITK (v2021.02), Bugzilla
floca moved T27641: [Segmentation] Watershed does always generate a 3D static seg. Even if dynamic segmentation was generated. from Backlog to Segmentation on the MITK (v2021.02) board.
Aug 4 2020, 8:44 PM · Cleared, MITK (v2021.02)
floca committed rMITKeed36131e0f8: T27117 Revised the docu of matchpoint.algorithm.control (authored by floca).
T27117 Revised the docu of matchpoint.algorithm.control
Aug 4 2020, 5:19 PM
floca closed T27117: [MITKDoc] Revise Matchpoint Algorithm Control Plugin Documentation as Resolved by committing rMITKeed36131e0f8: T27117 Revised the docu of matchpoint.algorithm.control.
Aug 4 2020, 5:19 PM · Cleared, MITK (v2021.02)
floca added a revision to T27634: [Registration] Crash at application closure when Registration Manipulator or Evaluator is active: Unknown Object (Differential Revision).
Aug 4 2020, 5:05 PM · MITK (v2021.02)
floca committed rMITK70d153bbd471: Prevented crash on application closure. Fixed T27634 (authored by floca).
Prevented crash on application closure. Fixed T27634
Aug 4 2020, 5:05 PM
floca committed rMITKa74c5b452c76: Prevented crash on application closure. (authored by floca).
Prevented crash on application closure.
Aug 4 2020, 5:04 PM
floca closed T27634: [Registration] Crash at application closure when Registration Manipulator or Evaluator is active as Resolved by committing rMITKa74c5b452c76: Prevented crash on application closure..
Aug 4 2020, 5:04 PM · MITK (v2021.02)
neher triaged T27647: Fix dicom module renaming and rest module dep as High priority.
Aug 4 2020, 4:33 PM · MITK Diffusion
neher closed T27644: Visualize tractometry binning as Resolved.
Aug 4 2020, 2:46 PM · MITK Diffusion
thomass triaged T27646: [Data manager] Option to change color of segmentation disappeared in data manager as Normal priority.
Aug 4 2020, 2:31 PM · Auto-closed, Request for Discussion, MITK
neher committed rMITKDIFF5c25c9c1056c: Merge branch 'T27644-TractometryBinning' (authored by neher).
Merge branch 'T27644-TractometryBinning'
Aug 4 2020, 2:25 PM
neher committed rMITKDIFF41104a673019: Added centroid based binning (authored by neher).
Added centroid based binning
Aug 4 2020, 2:25 PM

Aug 3 2020

neher committed rMITKDIFF4c72d53fc1ad: Add coloring basic (authored by neher).
Add coloring basic
Aug 3 2020, 4:11 PM
neher added a comment to T27644: Visualize tractometry binning.

Pushed new branch T27644-TractometryBinning.

Aug 3 2020, 4:11 PM · MITK Diffusion
neher triaged T27644: Visualize tractometry binning as Wishlist priority.
Aug 3 2020, 3:53 PM · MITK Diffusion
floca edited projects for T24775: Refactor plugins to use the new node selection widgets, added: MITK; removed MITK (v2021.02).
Aug 3 2020, 1:30 PM · MITK, Restricted Project, Cleared
kalali committed rMITK936b789bbc0a: Refactor DeformableClippingPlane plugin to use the new node selection widgets (authored by kalali).
Refactor DeformableClippingPlane plugin to use the new node selection widgets
Aug 3 2020, 1:13 PM
kalali committed rMITK540a9ae22d0d: Ensure color components to be <= 1.0f (authored by kalali).
Ensure color components to be <= 1.0f
Aug 3 2020, 1:13 PM
kalali committed rMITK3accc287f87d: Add more const-correctness (authored by kalali).
Add more const-correctness
Aug 3 2020, 1:13 PM
kalali committed rMITK0b78143eecdf: Simplify function and make it more readable (authored by kalali).
Simplify function and make it more readable
Aug 3 2020, 1:13 PM
kalali committed rMITKd074f7074a76: Simplify condition to enable UI element (group box) (authored by kalali).
Simplify condition to enable UI element (group box)
Aug 3 2020, 1:13 PM
kalali committed rMITK52360025467c: Simplify for-loop and change style (authored by kalali).
Simplify for-loop and change style
Aug 3 2020, 1:13 PM
kalali committed rMITK9443f151d240: Make nullptr check more visible (authored by kalali).
Make nullptr check more visible
Aug 3 2020, 1:13 PM
kalali committed rMITKc63c38d0ab16: Use auto (authored by kalali).
Use auto
Aug 3 2020, 1:13 PM
kalali committed rMITK41eed2598243: Fix missing "this" pointer (authored by kalali).
Fix missing "this" pointer
Aug 3 2020, 1:13 PM
kalali committed rMITK13e2b28d1f68: Use mitk numeric constant (authored by kalali).
Use mitk numeric constant
Aug 3 2020, 1:12 PM
kalali committed rMITK130dcde2604e: Move controls initialization to constructor initializer list (authored by kalali).
Move controls initialization to constructor initializer list
Aug 3 2020, 1:12 PM
kalali committed rMITK27164bacf476: Simplify string comparison (authored by kalali).
Simplify string comparison
Aug 3 2020, 1:12 PM
kalali committed rMITK1a203b8744af: Use const ref value for the list of nodes (authored by kalali).
Use const ref value for the list of nodes
Aug 3 2020, 1:12 PM
kalali updated the task description for T24775: Refactor plugins to use the new node selection widgets.
Aug 3 2020, 1:12 PM · MITK, Restricted Project, Cleared
kalali committed rMITKc0bab37190df: Change include type (authored by kalali).
Change include type
Aug 3 2020, 1:12 PM
kalali committed rMITK360cbd97d8b1: Use explicit type (authored by kalali).
Use explicit type
Aug 3 2020, 1:12 PM
kalali closed T27595: Refactor DeformableClippingPlane plugin to use the new node selection widgets, a subtask of T24775: Refactor plugins to use the new node selection widgets, as Resolved.
Aug 3 2020, 1:12 PM · MITK, Restricted Project, Cleared
kalali committed rMITKd8fab84f37d5: Use const iterator (authored by kalali).
Use const iterator
Aug 3 2020, 1:12 PM
kalali closed T27595: Refactor DeformableClippingPlane plugin to use the new node selection widgets as Resolved.
Aug 3 2020, 1:12 PM · Cleared, MITK (v2021.02)
kalali committed rMITKa46a421d410e: Fix unused parameter (authored by kalali).
Fix unused parameter
Aug 3 2020, 1:12 PM
kalali committed rMITK7b75d1810240: Fix error with hidden virtual function (authored by kalali).
Fix error with hidden virtual function
Aug 3 2020, 1:12 PM
kalali committed rMITKfc60fc85e4b0: Modify UI to include single node selection widget (authored by kalali).
Modify UI to include single node selection widget
Aug 3 2020, 1:12 PM
kalali committed rMITKfc88c26aa74c: Clean code: use auto, define node predicates (authored by kalali).
Clean code: use auto, define node predicates
Aug 3 2020, 1:12 PM
kalali committed rMITK85bd2c3a02e7: Use new Qt5 signal-slot syntax (authored by kalali).
Use new Qt5 signal-slot syntax
Aug 3 2020, 1:12 PM
kalali committed rMITKa67b507f168c: Clean class: reorder functions, fix style, remove comments (authored by kalali).
Clean class: reorder functions, fix style, remove comments
Aug 3 2020, 1:12 PM
thomass added a comment to T27641: [Segmentation] Watershed does always generate a 3D static seg. Even if dynamic segmentation was generated..

Test image: 3D+t Heart

Aug 3 2020, 9:49 AM · Cleared, MITK (v2021.02)
thomass closed T27642: [Segmentation] Watershed segmentation always creates a second segmentation which is 3D even if the image is 4D and dynamic as Invalid.

duplicate to T27641

Aug 3 2020, 9:49 AM · MITK (v2021.02)
floca removed a project from T27641: [Segmentation] Watershed does always generate a 3D static seg. Even if dynamic segmentation was generated.: Restricted Project.
Aug 3 2020, 9:47 AM · Cleared, MITK (v2021.02)
thomass triaged T27642: [Segmentation] Watershed segmentation always creates a second segmentation which is 3D even if the image is 4D and dynamic as High priority.
Aug 3 2020, 9:47 AM · MITK (v2021.02)
floca placed T27641: [Segmentation] Watershed does always generate a 3D static seg. Even if dynamic segmentation was generated. up for grabs.
Aug 3 2020, 9:47 AM · Cleared, MITK (v2021.02)
floca triaged T27641: [Segmentation] Watershed does always generate a 3D static seg. Even if dynamic segmentation was generated. as High priority.
Aug 3 2020, 9:46 AM · Cleared, MITK (v2021.02)
thomass added a comment to T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation.

You totally right and the reason why I oversaw this is when I double checked:

Aug 3 2020, 9:43 AM · MITK (v2021.10), Missing Info, Restricted Project
neher triaged T27640: Segmentation cannot handle signed images as Normal priority.
Aug 3 2020, 8:52 AM · Auto-closed, MITK

Aug 2 2020

floca added a comment to T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation.

All issues have been adressed in respective subtasks.

Aug 2 2020, 9:37 PM · MITK (v2021.10), Missing Info, Restricted Project
thomass closed T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation as Resolved.

All issues have been adressed in respective subtasks.

Aug 2 2020, 5:26 PM · MITK (v2021.10), Missing Info, Restricted Project
thomass closed T26840: Mission Homepage Reorganization as Resolved.
Aug 2 2020, 4:05 PM · MITK
kislinsk added a comment to T25882: Rewrite dashboard script for CDash 2.6.

The This build already has a configure error in the CDash log file is triggered because we submit the Configure part twice: for the superbuild and for the MITK-build. However, it seems that this part is only allowed to be submitted once.

Aug 2 2020, 11:43 AM · CI, MITK (v2021.02), Restricted Project
kislinsk added a comment to T25882: Rewrite dashboard script for CDash 2.6.

Pushed new branch hotfix/T25882-CDash-v2.6.

Aug 2 2020, 10:43 AM · CI, MITK (v2021.02), Restricted Project
kislinsk added a comment to T26854: Unattended Qt installation.

Here is the currently working script.

Aug 2 2020, 7:50 AM · CI, Restricted Project, MITK
kislinsk renamed CEST References from CEST references to CEST References.
Aug 2 2020, 7:37 AM
kislinsk edited the content of CEST User Manual.
Aug 2 2020, 7:35 AM · MITK
kislinsk reopened T25882: Rewrite dashboard script for CDash 2.6 as "Open".

I still cannot browse submission results. :/

Aug 2 2020, 7:31 AM · CI, MITK (v2021.02), Restricted Project