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Maniphest T2656

Segmentation module for 3M
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Description

Features should be

  • interactive segmentation of 2D, 3D, 3D+t images
  • automatic segmentation of the liver on portal venous CT images
  • semi-automatic (initial placement of model) segmentation of
    • left ventricle and left ventricle outer wall on MR
    • hippocampus on MR
    • left and right lung on MR
  • interactive lesion segmentation
  • "postprocessing" of segmentations:
    • volume visualisation for quick overview
    • surface model creation via marching cubes
    • volumetry and simple statistics / histogram

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StatusAssignedTask
ResolvedNoneT2494 META: Create usable end-user application / demo (3M3)
ResolvedNoneT2656 Segmentation module for 3M
ResolvedNoneT2699 New icons for segmentation tools
ResolvedNoneT2769 Fix 0.5-pixel offset issues
ResolvedNoneT2683 Segmentation documentation
InvalidNoneT2704 Update MITK homepage about org.mitk.gui.qt.segmentation
ResolvedNoneT2705 Doxygen user manual for org.mitk.gui.qt.segmentation
ResolvedNoneT2770 Describe behavior of region growing tool
InvalidNoneT2961 Segmentation of 3D+t images not working
ResolvedNoneT2990 4D support for Segmentation bundle: Lymph node part;
ResolvedNoneT2844 Buttons are disabled in org.mitk.gui.qt.segmentation
ResolvedNoneT2832 "Reinit" warning visible too long
ResolvedNoneT2845 Handle out-of-memory situations
ResolvedNoneT2919 Organ tab on Organ segmentation view is empty
Restricted Maniphest Task
ResolvedNoneT2658 Show only selected reference image for segmentation module
ResolvedNoneT2707 org.mitk.gui.qt.segmentation should send openCherry selection events for segmentations
ResolvedNoneT2702 Offer 'segmentation postprocessing' via context menu
ResolvedNoneT2703 Decide on Thresholding tool
ResolvedNoneT2853 "New segmentation" not disabled when no image is selected.
ResolvedNoneT2741 Segmentation View: GUI improvements
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WontfixNoneT2706 Show volume column / make columns configurable?
ResolvedNoneT2960 Manual contouring of 2D images not working
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ResolvedNoneT2700 org.mitk.gui.qt.segmentation should not ask for organ type, but for a name/color combination
ResolvedNoneT2788 Segmentation tools are disabled
ResolvedNoneT2944 Crosshair stuck when using Segmentation perspective
ResolvedNoneT2922 3M-Application crashes upon closing, when segmentation bundle was active
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ResolvedNoneT2953 Which models to integrate for release?
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ResolvedNoneT3001 Segmentation View: new Lymph Lesion is not automatically selected in the datamanager
ResolvedNoneT2666 Binary images should count as 'image mask' in data manager
ResolvedNoneT3049 Segmentation bundle: Lymph Node shapemodel segmentation spams an error message
Restricted Maniphest Task
ResolvedNoneT3002 Segmentation view: new lymph node is not visible after creation

Event Timeline

maleike added projects: MITK, Bugzilla.Oct 13 2009, 4:29 PM
maleike added a subscriber: maleike.

ah, further feature: lymph node segmentation

maleike added a comment.Oct 19 2009, 3:45 PM

[SVN revision 19536]
ENH (#2656): basic structure of 3M segmentation module

maleike added a comment.Oct 19 2009, 4:44 PM

[SVN revision 19539]
FIX (#2656): correctly group shape model tool

maleike added a comment.Nov 2 2009, 8:38 PM

[SVN revision 19855]
ENH (#2656): add a perspective for segmentation

maleike added a comment.Nov 12 2009, 12:15 PM

[SVN revision 20069]
FIX (#2656): apply visualization preferences to all newly created nodes

maleike added a comment.Nov 13 2009, 2:20 PM

[SVN revision 20117]
CHG (#2656): remove tumor tools; could be added for the next release

maleike added a comment.Nov 13 2009, 5:30 PM

[SVN revision 20143]
FIX (#2656): fix reactions to data manager selections

maleike added a comment.Nov 13 2009, 8:08 PM

[SVN revision 20156]
FIX (#2656): only send selection event once; introduction of this double call was a mistake from a bug fixing attempt

muellerm added a subscriber: muellerm.Nov 20 2009, 1:01 PM

[SVN revision 20414]
FIX (#2656): When a new segmentation is created it will get selected in DM and the contouring buttons will get enabled

maleike added a comment.Nov 25 2009, 2:28 PM

[SVN revision 20530]
CHG (#2656): start with manual contouring tab

maleike added a comment.Nov 26 2009, 8:56 AM

Fixed as much as possible for release..

nolden added a subscriber: nolden.Jul 27 2011, 11:41 AM

Merging "applicazion modules" component with "ExtApp plugins"

kislinsk closed subtask Restricted Maniphest Task as Wontfix.Jun 20 2018, 6:58 AM
kislinsk closed subtask Restricted Maniphest Task as Wontfix.
kislinsk reopened subtask T2706: Show volume column / make columns configurable? as Open.Jun 27 2018, 1:05 PM
kislinsk closed subtask T2706: Show volume column / make columns configurable? as Wontfix.Jun 27 2018, 1:10 PM
kislinsk changed the status of subtask T2961: Segmentation of 3D+t images not working from Invalid to Spite.Jun 27 2018, 1:33 PM
kislinsk changed the status of subtask T2961: Segmentation of 3D+t images not working from Spite to Invalid.Jun 27 2018, 1:37 PM
kislinsk reopened subtask Restricted Maniphest Task as Open.Jun 27 2018, 2:57 PM
kislinsk reopened subtask Restricted Maniphest Task as Open.
kislinsk reopened subtask Restricted Maniphest Task as Open.Jun 27 2018, 3:07 PM
kislinsk reopened subtask Restricted Maniphest Task as Open.
kislinsk reopened subtask Restricted Maniphest Task as Open.
kislinsk reopened subtask Restricted Maniphest Task as Open.
kislinsk closed subtask Restricted Maniphest Task as Resolved.Jun 27 2018, 3:24 PM
kislinsk closed subtask Restricted Maniphest Task as Resolved.
kislinsk closed subtask Restricted Maniphest Task as Resolved.Jun 27 2018, 3:32 PM
kislinsk closed subtask Restricted Maniphest Task as Resolved.
kislinsk closed subtask Restricted Maniphest Task as Resolved.
kislinsk closed subtask Restricted Maniphest Task as Resolved.
MITK · MIC · IMSY · DKFZ