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Mon, Sep 16

kislinsk closed T27684: [Segmentation] Improve Region Growing 2D algorithm and interaction as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T27285: [Image Statistics] QmitkChart widget should support ID or allow control over labels, a subtask of T27284: [Image Statistic] Histogram is only supported with one image and <=1 ROI, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T27285: [Image Statistics] QmitkChart widget should support ID or allow control over labels as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T27354: Make conversion functions for different DataNode lists/vector types publicly available as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Restricted Project
kislinsk closed T27458: Activate Test also for arc diff builds to avoid missed unit test errors as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), CI
kislinsk closed T27455: Go through pull requests as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Cleared
kislinsk closed T27357: Check/Update DICOMTags of interest as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Cleared, HiGHmed
kislinsk closed T27684: [Segmentation] Improve Region Growing 2D algorithm and interaction, a subtask of T28499: Refactor/rewrite RegionGrowing3D tool, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T27414: Adapt CMake version macro to generate version description with "no official release" as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Restricted Project, CI
kislinsk closed T27720: mitkPackageTest fails on Windows Nightlies as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T27871: [Registration] Mapper should only autoselect Reference if it is an image as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T27807: [MultiLabel Segmentation] Inspection of module and plugin as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T28544: Difference of loading RT data DicomBrowser vs. "Standard loading" as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion
kislinsk closed T28217: [MatchPoint] Registrations generated with manipulator have no proper PropertyReleations as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T28259: Refactor the usage of QmitkSliceNavigationListener as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T28176: [Segmentation] Inspection of module and plugin as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T28209: [MatchPoint] Preference setting additional algorithm does not work as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T28479: [Segmentation] Rethink / reevaluate our existing segmentation tools / algorithms as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T28156: [Segmentation] Fix timestep / timepoint types as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T28262: TimeGeometry inconsistent documentation and implementation of time bounds and checks as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T28785: Levelwindow UX proposals/comments as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist, Missing Info, Request for Discussion
kislinsk closed T28791: [Segmentation][Multilabel][Options]"Create polygon model" issues for large images as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist
kislinsk closed T29157: NCT ISSO Annotation Support with MITK Segmentation Flow as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29140: [Selection widget] Optional selection can not be removed if a fitting node is always found as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion
kislinsk closed T29148: [Image statistics] Error is logged if a label is empty as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29168: [Multilabel Segmentation] Definition and usage of masking and maskstamping as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29163: [XNAT] Opening XNAT session fails as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29192: [SEG] MONAI Label support in MITK Workbench, a subtask of T29191: [SEG] New segmentation tool candidates, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29191: [SEG] New segmentation tool candidates as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29192: [SEG] MONAI Label support in MITK Workbench as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29204: [SEG] Rework properties of Label class + add instance information as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Breaking Change
kislinsk closed T29275: Test new nnUNet(v2) python codebase with MITK as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29269: Check geometries in SliceNavigationController and BaseRenderer as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29204: [SEG] Rework properties of Label class + add instance information, a subtask of T30157: [DCM][SEG] potential in compliance to DICOM segmentation: clarify correct use of pixel value/segment number, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Missing Info, Request for Discussion
kislinsk closed T29240: [mxn multi widget] Allow different time navigation controller for each individual render window as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29290: SliceNavigationController and its Stepper fire too many events, a subtask of T29269: Check geometries in SliceNavigationController and BaseRenderer, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29295: MONAI Label App as auto-segmentation tool in MITK, a subtask of T29192: [SEG] MONAI Label support in MITK Workbench, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29295: MONAI Label App as auto-segmentation tool in MITK as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29364: [mxn multi widget] Image navigator cannot be used as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29333: [mxn multi widget] Measurements / planar figure not working as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29374: [SEG] Instant visual response to inverted state of tools (add, substract, paint, wipe) as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29379: MONAI Label REST Response JSON issues, allegedly, a subtask of T29192: [SEG] MONAI Label support in MITK Workbench, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29389: Python utility module as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29386: [mxn multi widget] StdDisplay unnecessarily uses the crosshair manager as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29365: [mxn multi widget] Pointset interaction not working as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29415: [mxn multi widget] Allow mxn windows to show 3D view as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29436: CLGlobalImageFeature is to pedantic on its geometry checks. as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29420: [Segmentation] SegWithPreviewTool does not work with vector / multi channel images as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29455: Avoid image R/W to disk for MonaiLabel REST transactions, a subtask of T29295: MONAI Label App as auto-segmentation tool in MITK, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29498: [mxn multi widget] Restructure QmitkSynchronizedNodeSelectionWidget and QmitkAbstractNodeSelectionWidget as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29487: Tool Icon for TotalSegmentator as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29490: [StdMultiWidget] Block multi widget like it is done for the MxNMultiWidget as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29493: RenderWindow management classes need to be revised / cleaned as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29499: [mxn multi widget] Test inverted slice navgation widget for 4D data as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29501: mitk::Mapper needs to be explicitly set as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29504: Initialize QmitkSlicesInterpolator with render windows instead of slice navigation controllers as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29514: [mxn multi widget] Render windows are not correctly initialized as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29523: Segmentation Task Lists may change label suggestions persistently, a subtask of T29157: NCT ISSO Annotation Support with MITK Segmentation Flow, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29518: Initial auto-selection does not work in QmitkSingleNodeSelectionWidget as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29512: [mxn multi widget] Share crosshairs between individual render windows as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29511: [mxn multi widget] Provide more information with crosshair data as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29523: Segmentation Task Lists may change label suggestions persistently as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29535: Reinit of scene with planar figure while the Display is closed leads to crash as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Known Issue
kislinsk closed T29549: [Segmentation] Label search does not work as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29524: SAM in MITK, a subtask of T29191: [SEG] New segmentation tool candidates, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29582: [Segmentation] Error when pressing "Undo" after undoing all fill changes, a subtask of T30267: [Segmentation] Undo/Redo does not work for many aspects of segmentation, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist
kislinsk closed T29562: [GrowCut] "Undo" only changes slices with seed images, a subtask of T30267: [Segmentation] Undo/Redo does not work for many aspects of segmentation, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist
kislinsk closed T29594: Improve MITK help text for nnUNet tool as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist, Request for Discussion
kislinsk closed T29582: [Segmentation] Error when pressing "Undo" after undoing all fill changes as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Missing Info, Checklist
kislinsk closed T29596: Move out FAST checkbox from Advanced as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion, Checklist
kislinsk closed T29597: TotalSeg didn't remember python environment as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist
kislinsk closed T29595: Make nnUNet folder parsing more resilient to stray folders as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion, Checklist
kislinsk closed T29651: [Preferences] SAM tool Preferences not rendered nicely on MacOS as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29639: [Registration] Mapping crashes when super-sampling is activated as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Missing Info
kislinsk closed T29653: SAM tool: Install process can be non-blocking as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29652: [Preferences] Cannot open SAM preference page after tool activation as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30149: nnUNet(v2) in MITK as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30154: MONAI Label server usage issues, a subtask of T29192: [SEG] MONAI Label support in MITK Workbench, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29654: SAM tool: Preview not fully cleared when Reset Picks button is clicked as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30151: MONAI Label tool support CLICK interaction patterns, a subtask of T29192: [SEG] MONAI Label support in MITK Workbench, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30147: MONAI Label: New approach using python wrapper??, a subtask of T29192: [SEG] MONAI Label support in MITK Workbench, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30151: MONAI Label tool support CLICK interaction patterns as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30147: MONAI Label: New approach using python wrapper?? as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion
kislinsk closed T30160: Move MITK to our GitLab instance as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30164: [Segmentation] [Bug] 2D RGB image not correctly handled by SegPreviewTool API tool as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion
kislinsk closed T30182: [SEG] Storing segmentation as DICOM Seg failes if reference image is not a valid DICOM as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30204: Improve visibility between help files for perfusion as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion
kislinsk closed T30232: MONAI Label: Level Window contrast effects as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30210: [SEG] Add dedicated reader for label image stack support as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30240: MonaiLabel: How to support more apps as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30209: [SEG] Add a writer for label image stack support as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30208: [SEG] Add support to read/write stack of label images from/to a mitk label image as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30209: [SEG] Add a writer for label image stack support, a subtask of T30208: [SEG] Add support to read/write stack of label images from/to a mitk label image, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30210: [SEG] Add dedicated reader for label image stack support, a subtask of T30208: [SEG] Add support to read/write stack of label images from/to a mitk label image, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30232: MONAI Label: Level Window contrast effects , a subtask of T29192: [SEG] MONAI Label support in MITK Workbench, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30240: MonaiLabel: How to support more apps, a subtask of T29192: [SEG] MONAI Label support in MITK Workbench, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30229: MONAI Label tool: Introduce time out parameter entry in Preferences, a subtask of T29192: [SEG] MONAI Label support in MITK Workbench, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30229: MONAI Label tool: Introduce time out parameter entry in Preferences as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion
kislinsk closed T30250: [MxN] Windows created by preset have no in-window menus as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30242: [MONAILabel] Trouble activating SSL support in Httplib as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
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