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May 13 2019

kleina added a comment to T26276: Segmentation created for multiple timepoints on 3D+t images.

I forgot to enable the segmentation plugin... I'll test it tomorrow.

May 13 2019, 4:49 PM · MITK
kleina added a comment to T26276: Segmentation created for multiple timepoints on 3D+t images.

I can reproduce it. I did exactly the steps in the task description. I used MITK.2018.4.0 installer. I'll check on a (more or less) current master.

May 13 2019, 4:33 PM · MITK
kleina added a comment to T26276: Segmentation created for multiple timepoints on 3D+t images.

Wait for it...

May 13 2019, 4:30 PM · MITK
kausch added a comment to T26276: Segmentation created for multiple timepoints on 3D+t images.

I couldn't reproduce it. @kleina Can you? (maybe it occurred only due to missing reinit?)

May 13 2019, 4:12 PM · MITK
kislinsk added a comment to T26276: Segmentation created for multiple timepoints on 3D+t images.

@kausch What's the status on this task?

May 13 2019, 3:12 PM · MITK
kislinsk committed rMITK326e4070d23b: Merge branch 'T26252-BoostInstallError' into releases/2018-04 (authored by kislinsk).
Merge branch 'T26252-BoostInstallError' into releases/2018-04
May 13 2019, 2:27 PM
kislinsk closed T26252: Boost install error as Resolved.
May 13 2019, 2:26 PM · MITK
kislinsk committed rMITK63119b890025: Fix install error on some machines (authored by kislinsk).
Fix install error on some machines
May 13 2019, 2:26 PM
kislinsk added a comment to T26252: Boost install error.

Pushed new branch T26252-BoostInstallError.

May 13 2019, 2:26 PM · MITK
kislinsk lowered the priority of T26187: Create polygon model works only once from High to Low.

I really tried but I was not able to reproduce this issue. For example, I created a segmentation and clicked multiple times on "Create smoothed polygon model" and "Create polygon model". Worked every time. I then created another segmentation in the same scene and did the same there with the same results.

May 13 2019, 2:17 PM
kislinsk edited projects for T24555: HDF5 library: superbuild fails in Install phase of RelWithDebInfo, added: MITK (2018-04-4); removed MITK.
May 13 2019, 2:03 PM · Auto-closed, MITK
mittmann moved T25522: Fiducial based CT registration from In Progress to Ready for merge on the IGT board.
May 13 2019, 11:30 AM · Restricted Project, MITK, IGT
mittmann committed rMITKfc7d60a21e58: Merge branch 'T25522-MasterIntegrationBranch-14-02-2019' into T25522… (authored by mittmann).
Merge branch 'T25522-MasterIntegrationBranch-14-02-2019' into T25522…
May 13 2019, 11:30 AM
mittmann added a comment to T25522: Fiducial based CT registration.

Pushed new branch T25522-MasterIntegrationBranch-13-05-2019.

May 13 2019, 11:30 AM · Restricted Project, MITK, IGT
mittmann committed rMITKf804e1ba25c7: Merge branch 'T26047-RenameEchoTrackPlugin' into T25522-MasterIntegrationBranch… (authored by mittmann).
Merge branch 'T26047-RenameEchoTrackPlugin' into T25522-MasterIntegrationBranch…
May 13 2019, 11:27 AM
kislinsk triaged T26327: Deleting points is cumbersome as Low priority.
May 13 2019, 10:37 AM · Auto-closed, MITK
steint committed rMITK0f9f7bc48426: Add environment variables for deployment (authored by steint).
Add environment variables for deployment
May 13 2019, 8:42 AM

May 11 2019

floca triaged T26326: CI for hyppopy as Normal priority.
May 11 2019, 6:09 PM · Hyppopy
floca committed rOBSHYPPOPY28b51f16932d: Fixed T26325 (authored by floca).
Fixed T26325
May 11 2019, 6:05 PM
floca closed T26325: Add code coverage for hyppopy as Resolved by committing rOBSHYPPOPY28b51f16932d: Fixed T26325.
May 11 2019, 6:05 PM · Hyppopy
floca added a comment to T26325: Add code coverage for hyppopy.

Code coverage can be checked now.
And everything is setup up to use it with codecov.io

May 11 2019, 6:02 PM · Hyppopy
floca renamed T26325: Add code coverage for hyppopy from Add codecov for hyppopy to Add code coverage for hyppopy.
May 11 2019, 5:56 PM · Hyppopy
floca created T26325: Add code coverage for hyppopy.
May 11 2019, 12:16 PM · Hyppopy

May 10 2019

steint committed rMITK3fa88482d95d: Add new module DICOMweb including the Dicomweb functions from the plugin (authored by steint).
Add new module DICOMweb including the Dicomweb functions from the plugin
May 10 2019, 4:26 PM
steint committed rMITK2b5f2e56e686: Refactoring of RESTClient to handle JSON/binary Global replacement of _XPLATSTR… (authored by steint).
Refactoring of RESTClient to handle JSON/binary Global replacement of _XPLATSTR…
May 10 2019, 4:26 PM
hentsch committed rMITK14805bb60f51: Merge branch 'T25832-migrateModelFitToMitkCHart' into T25832… (authored by hentsch).
Merge branch 'T25832-migrateModelFitToMitkCHart' into T25832…
May 10 2019, 4:18 PM
hentsch committed rMITK44c6919eebcc: colored current timepoint blue like in the old version (authored by hentsch).
colored current timepoint blue like in the old version
May 10 2019, 4:18 PM
hentsch added a comment to T25832: Migrate ModelFit inspector plugin to MitkChart.

Pushed new branch T25832-migrateModelFit2019-05.

May 10 2019, 4:18 PM · Restricted Project, Restricted Project, MITK
kausch committed rMITK0123ab2c9703: Added BasicProxyModel to filter default and additional image statistic values… (authored by kausch).
Added BasicProxyModel to filter default and additional image statistic values…
May 10 2019, 4:14 PM
steint committed rMITKef2223a118ba: ChartExample: add button to update the current chart if it exists Add emit… (authored by steint).
ChartExample: add button to update the current chart if it exists Add emit…
May 10 2019, 3:14 PM
hentsch committed rMITKce9437ef2d48: Merge branch 'T26324-optimizeZoomingOption' (authored by hentsch).
Merge branch 'T26324-optimizeZoomingOption'
May 10 2019, 2:48 PM
hentsch closed T26324: [MitkChart] optimize zooming option as Resolved by committing rMITK8b388b272304: resolved T26324 min/max values of x and y are now stored as variable in….
May 10 2019, 2:48 PM · MITK
hentsch committed rMITK8b388b272304: resolved T26324 min/max values of x and y are now stored as variable in… (authored by hentsch).
resolved T26324 min/max values of x and y are now stored as variable in…
May 10 2019, 2:47 PM
hentsch added a comment to T26324: [MitkChart] optimize zooming option.

Pushed new branch T26324-optimizeZoomingOption.

May 10 2019, 2:47 PM · MITK
hentsch committed rMITK14a7ff9f8e73: removed unnecessary workaround after T26222 was fixed (authored by hentsch).
removed unnecessary workaround after T26222 was fixed
May 10 2019, 1:52 PM
kalali committed rMITK07bd2d71d29b: Update to latest Matchpoint version (authored by kalali).
Update to latest Matchpoint version
May 10 2019, 1:50 PM
kalali committed rMITK333ef2228793: Update to latest Matchpoint version (authored by kalali).
Update to latest Matchpoint version
May 10 2019, 1:50 PM
hentsch triaged T26324: [MitkChart] optimize zooming option as Normal priority.
May 10 2019, 1:50 PM · MITK
kalali added a revision to T26270: Update MatchPoint third party file: Unknown Object (Differential Revision).
May 10 2019, 1:48 PM · MITK
kausch committed rMITK7e4007ff9b3d: Merge branch 'T25871-fix-unsigned-int-comparison-warning' (authored by kausch).
Merge branch 'T25871-fix-unsigned-int-comparison-warning'
May 10 2019, 1:47 PM
kausch committed rMITKedd328dd752e: cast int to unsigned int to get rid of warning (authored by kausch).
cast int to unsigned int to get rid of warning
May 10 2019, 1:46 PM
kausch added a comment to T25871: [chart] Implement the chart type pie.

Pushed new branch T25871-fix-unsigned-int-comparison-warning.

May 10 2019, 1:46 PM · Restricted Project, MITK
kausch committed rMITK0e65deaa13f5: Merge branch 'T19683-ShowOnlySelectedNodesCrosshairVisibilty-baseRenderer' (authored by kausch).
Merge branch 'T19683-ShowOnlySelectedNodesCrosshairVisibilty-baseRenderer'
May 10 2019, 1:33 PM
kausch committed rMITK67cc09ba5575: baseRenderer added as argument to SetVisibilty (authored by kausch).
baseRenderer added as argument to SetVisibilty
May 10 2019, 1:30 PM
kausch added a comment to T19683: "Show only selected node" changes the visibility of crosshair.

Pushed new branch T19683-ShowOnlySelectedNodesCrosshairVisibilty-baseRenderer.

May 10 2019, 1:30 PM · Bugzilla, Pull Request, MITK
floca added a comment to T26323: [MitkChart] add feature to highlight/colorize point.

I think it would be nice but is no show stopper, because we could, as a work arround, use a chartline that only contains the highlited point(s).

May 10 2019, 1:25 PM · Auto-closed, MITK
hentsch added a comment to T25832: Migrate ModelFit inspector plugin to MitkChart.

T26323 is needed to highlight the current point

May 10 2019, 1:21 PM · Restricted Project, Restricted Project, MITK
hentsch triaged T26323: [MitkChart] add feature to highlight/colorize point as Normal priority.
May 10 2019, 1:21 PM · Auto-closed, MITK
hentsch added a comment to T25832: Migrate ModelFit inspector plugin to MitkChart.

Feedback from @floca:

  1. Der Titel der X-Achse und die Achsenbeschriftungen liegen über einander und sind deshalb nicht zu lesen.
    • is already fixed with T26274, but not yet in this branch
  2. Fixed Scaling (für X und Y) funktioniert nicht richtig.
    • true
  3. In der Methode OnFullPlotClicked ist ein Task (T26222) referenziert, den es gar nicht gibt. Vielleicht ist das aber jetzt auch schon durch meinen Fix erledigt.
    • code was deleted, works fine
  4. Kritische Regression gegenüber dem alten Widget: Im Moment flackert es immer sobald man die Achsen anpasst oder (noch schlimmer) wenn man einen neuen Punkt ansteuert. Dass ist insbesondere beim explorieren von Daten nicht gut, da es leicht laggt und sehr irritiert.
    • opened T26320
  5. Kritische Regression gegenüber dem alten Widget: Im Moment aktualisiert sich der Plot erst wenn man die Maus wieder loslässt (wenn man im SliceNavigator oder direkt im Bild neue Punkte anfährt). Früher wurde automatisch immer gleich mit aktualisiert, es wäre sehr gut, wenn das wieder so wäre. Entsprechend müsste der Chart neugemalt werden, jedesmal wenn die Positionsänderung propagiert wird. Im Moment sieht es so aus, als würde gewartet, bis der Main-Thread idelt.
    • can't reproduce. The update takes a while (probably because of new painting of the widget), but has nothing to do with mouse click release. @floca we should look again if T26320 is fixed.
May 10 2019, 1:15 PM · Restricted Project, Restricted Project, MITK
kausch updated kausch.
May 10 2019, 11:37 AM
kausch requested verification of rMITK750daa0b6d2b: Fixed crash for single time step segmentations.

We reverted the changes according to your concerns. Instead of creating a new ImageStatisticsObject in the GetStatisticsForTimeStep method, we now check whether the time step exists before calling the method. That fixed the problem. Statistics are now only shown for the time steps that have a segmentation associated with.

May 10 2019, 11:30 AM
kausch committed rMITK0d71be43cc39: Check if time steps exist before GetStatisticsForTimeStep (authored by kausch).
Check if time steps exist before GetStatisticsForTimeStep
May 10 2019, 11:25 AM
kislinsk removed a project from T25510: Revolutionize Superbuild: Request for Discussion.
May 10 2019, 11:24 AM · Auto-closed, MITK
kislinsk added a comment to T25882: Rewrite dashboard script for CDash 2.6.

To get an overview of MITK subprojects:

May 10 2019, 11:01 AM · CI, MITK (v2021.02), Restricted Project
hentsch committed rMITKecb7c1352672: Merge branch 'T25871-chartTypePie' (authored by hentsch).
Merge branch 'T25871-chartTypePie'
May 10 2019, 10:15 AM
hentsch closed T25871: [chart] Implement the chart type pie, a subtask of T23104: Deprecate QmitkPlotWidget, as Resolved.
May 10 2019, 10:15 AM · Auto-closed, Restricted Project, MITK
hentsch closed T25871: [chart] Implement the chart type pie as Resolved by committing rMITK95bf067aebbd: fixed T25871.
May 10 2019, 10:15 AM · Restricted Project, MITK
hentsch committed rMITKfff69839adec: improved chart example plugin (authored by hentsch).
improved chart example plugin
May 10 2019, 9:58 AM
hentsch committed rMITK95bf067aebbd: fixed T25871 (authored by hentsch).
fixed T25871
May 10 2019, 9:58 AM
hentsch added a comment to T25871: [chart] Implement the chart type pie.

Pushed new branch T25871-chartTypePie.

May 10 2019, 9:58 AM · Restricted Project, MITK
hentsch added a project to T25967: RegEx cant read special characters: Restricted Project.
May 10 2019, 8:48 AM · Restricted Project, Restricted Project

May 9 2019

s635r triaged T26319: Add randomness to QuasirandomSolver as Low priority.
May 9 2019, 5:10 PM · Hyppopy
s635r triaged T26322: Improve VisdomViewer Visualization as Low priority.
May 9 2019, 5:09 PM · Hyppopy
s635r triaged T26321: Searchspace Reconstruction as Low priority.
May 9 2019, 5:07 PM · Hyppopy
s635r committed rOBSHYPPOPYefad581f95fa: doc update (authored by s635r).
doc update
May 9 2019, 2:55 PM
floca added a comment to T23159: Make building a module automatically build all dependencies.

Without a fundamental rework of the rttb build mechanics the only way to sooth the problem is to explicitly check if all prerequisits are fullfilled and if not give a meaningfull cmake error message.

May 9 2019, 2:13 PM · Mantis, Restricted Project
floca moved T25967: RegEx cant read special characters from Restricted Project Column to Restricted Project Column on the Restricted Project board.
May 9 2019, 1:37 PM · Restricted Project, Restricted Project
s635r committed rOBSHYPPOPYa431db2f0ed2: doc update (authored by s635r).
doc update
May 9 2019, 12:23 PM
kleina updated kleina.
May 9 2019, 11:24 AM
kislinsk committed rMITKd47c6aa52fe4: Remove empty SUBPROJECTS parameters (authored by kislinsk).
Remove empty SUBPROJECTS parameters
May 9 2019, 9:04 AM
kislinsk committed rMITK743fb7f8bbcb: Fix Project.xml (authored by kislinsk).
Fix Project.xml
May 9 2019, 9:04 AM
kislinsk added a comment to T25882: Rewrite dashboard script for CDash 2.6.

Pushed new branch T25882-CDash-v2.6.

May 9 2019, 9:04 AM · CI, MITK (v2021.02), Restricted Project
kislinsk renamed T25882: Rewrite dashboard script for CDash 2.6 from Figure out why the MITK CDash submission to e071-jenkins/cdash is not browsable to Figure out why CDash submissions to CDash 2.6 servers are not browsable.
May 9 2019, 9:01 AM · CI, MITK (v2021.02), Restricted Project
kislinsk added a project to T25882: Rewrite dashboard script for CDash 2.6: MITK (2018-04-4).
May 9 2019, 8:59 AM · CI, MITK (v2021.02), Restricted Project

May 8 2019

steint committed rMITK637e13743bc9: Refactoring concerning GET server handling (module) Add adding-series function… (authored by steint).
Refactoring concerning GET server handling (module) Add adding-series function…
May 8 2019, 3:37 PM
s635r committed rOBSHYPPOPY08dbb443797c: comments added (authored by s635r).
comments added
May 8 2019, 3:22 PM
s635r renamed T26319: Add randomness to QuasirandomSolver from Improve QuasirandomSolver to Add randomness to QuasirandomSolver .
May 8 2019, 11:30 AM · Hyppopy
s635r created T26319: Add randomness to QuasirandomSolver .
May 8 2019, 11:30 AM · Hyppopy
hentsch added a comment to T23104: Deprecate QmitkPlotWidget.

This would be favorable. However, if we deprecate the QmitkPlotDialog/QmitkPlotWidget/QtHistogram classes, this leads to warnings (and errors because of warnings-as-errors).
@kislinsk do you see a possibility?

May 8 2019, 11:11 AM · Auto-closed, Restricted Project, MITK
s635r triaged T26318: Supress console output from 3rd parties as Low priority.
May 8 2019, 10:38 AM · Hyppopy
s635r closed T26241: VirtualFunction should get better name as Resolved.
May 8 2019, 10:32 AM · Hyppopy
hentsch added a comment to T26029: [image statistics plugin] 4D image + 4D segmentation as mask does not work.

@hentsch Is the one time step segmentation applied to all time steps? What is the expected behavior?

May 8 2019, 9:57 AM · Restricted Project, MITK
s635r committed rOBSHYPPOPY91528096994c: Comments added, VirtualFunction renamed -> FunctionSimulator (authored by s635r).
Comments added, VirtualFunction renamed -> FunctionSimulator
May 8 2019, 9:10 AM

May 7 2019

kleina committed rMITK9680b016958e: removed trained net from qrc (authored by kleina).
removed trained net from qrc
May 7 2019, 4:44 PM
kleina committed rMITKf885a64b28f2: The trained net can now be loaded via a dialog. (authored by kleina).
The trained net can now be loaded via a dialog.
May 7 2019, 4:35 PM
kleina committed rMITKfea1ce69c335: updated icon now dealing with image sizes that are not a power of 2 (authored by kleina).
updated icon now dealing with image sizes that are not a power of 2
May 7 2019, 3:55 PM
kislinsk added a comment to T25882: Rewrite dashboard script for CDash 2.6.

Things I found so far:

May 7 2019, 3:23 PM · CI, MITK (v2021.02), Restricted Project
kleina committed rMITK9dab7ee2f261: resize image, if # of slices not devidable by batch_size (authored by kleina).
resize image, if # of slices not devidable by batch_size
May 7 2019, 1:57 PM

May 6 2019

kleina committed rMITK904aac229739: Updated some log messages. (authored by kleina).
Updated some log messages.
May 6 2019, 3:13 PM
s635r committed rOBSHYPPOPY1111335fbba8: comments and renaming (authored by s635r).
comments and renaming
May 6 2019, 3:01 PM
kleina committed rMITKd139633e4e83: Some code cleanup and const string definition (authored by kleina).
Some code cleanup and const string definition
May 6 2019, 1:54 PM
steint committed rMITK98efc4ad9aac: Documentation of the whole plugin. Fix delete temp folder option. (authored by steint).
Documentation of the whole plugin. Fix delete temp folder option.
May 6 2019, 1:20 PM
kleina committed rMITK89e2fa29e259: add predicate helper for image selection (authored by kleina).
add predicate helper for image selection
May 6 2019, 11:34 AM
kleina committed rMITKa15c317c423a: Changed selection to comboBox way... (authored by kleina).
Changed selection to comboBox way...
May 6 2019, 11:24 AM
steint committed rMITK3f902f7f920c: Fix include formation. (authored by steint).
Fix include formation.
May 6 2019, 9:51 AM
steint committed rMITK32c2222f1ba8: Change send post implementation and handle put. Remove includes. (authored by steint).
Change send post implementation and handle put. Remove includes.
May 6 2019, 9:39 AM

May 3 2019

kleina committed rMITK375aecbac54e: Minor changes. (authored by kleina).
Minor changes.
May 3 2019, 6:42 PM
kleina committed rMITK8dc831bd480d: Added python script to resources (authored by kleina).
Added python script to resources
May 3 2019, 5:16 PM
kalali closed T22878: Level window slider only affects the topmost visible node in the data manager, a subtask of T25603: Combine render window manager with custom multi widget, as Invalid.
May 3 2019, 11:37 AM · Restricted Project, MITK
kalali closed T22878: Level window slider only affects the topmost visible node in the data manager as Invalid.

This task is not valid anymore.

  1. The level window slider has an option to modify the level window of a (list of) selected node(s) (see T25483)
  2. The BlackSwan project uses the PACS mode where the level window can be changed via mouse buttons
  3. The render window manager now uses the concept of data storage inspectors and thus behaves differently than here
May 3 2019, 11:37 AM · Restricted Project, MITK