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Nov 13 2019

kislinsk committed rMITK41b49b3ca47c: Replace RenderingMode::Standard by FastApproximateAntiAliasing (authored by kislinsk).
Replace RenderingMode::Standard by FastApproximateAntiAliasing
Nov 13 2019, 2:07 PM
kislinsk added a comment to T26653: Github pull request 263 (Forward vtkInformation objects to MITK mappers - allow for VTK depth peeling).

Pushed new branch T26653-MasterIntegrationFixes.

Nov 13 2019, 2:07 PM · MITK, Noteworthy, Pull Request
kalali triaged T26810: QmitkOverlayManagerView crashes when the view is closed and the focus is changed to another view as High priority.
Nov 13 2019, 1:54 PM · Auto-closed, Restricted Project, MITK
kislinsk closed T26653: Github pull request 263 (Forward vtkInformation objects to MITK mappers - allow for VTK depth peeling) as Resolved.
Nov 13 2019, 1:12 PM · MITK, Noteworthy, Pull Request
kislinsk committed rMITK1a024cf7b34a: Merge remote-tracking branch 'origin/releases/2018-04' (authored by kislinsk).
Merge remote-tracking branch 'origin/releases/2018-04'
Nov 13 2019, 1:02 PM
kislinsk committed rMITKa140adda1005: Merge branch 'T26653-ReenableDepthPeeling' into releases/2018-04 (authored by kislinsk).
Merge branch 'T26653-ReenableDepthPeeling' into releases/2018-04
Nov 13 2019, 12:45 PM
kislinsk added a comment to T26653: Github pull request 263 (Forward vtkInformation objects to MITK mappers - allow for VTK depth peeling).

All remaining issues solved by @maleike. I reintroduced the rendering mode preference but instead of switching between "Standard" (default, basically equivalent to "nothing") and "Depth Peeling" it now allows to switch between "No anti-aliasing" and "Fast Approximate Anti-Aliasing (FXAA)" (default). Depth peeling is always enabled as it only kicks in if there are translucent objects in the scene and in the worst case it is preferable to have not the fasted rendering instead of having a broken rendering. The future will show if we there is really a need to additionally add quality options regarding depth peeling.

Nov 13 2019, 12:43 PM · MITK, Noteworthy, Pull Request
kislinsk committed rMITKa9d670f8470c: Merge remote-tracking branch 'maleike/allow-vtk-depth-peeling' into T26653… (authored by kislinsk).
Merge remote-tracking branch 'maleike/allow-vtk-depth-peeling' into T26653…
Nov 13 2019, 12:37 PM
maleike committed rMITK5487c2164c30: Patch VTK to propagate property keys down VTK assemblies and prop assemblies (authored by maleike).
Patch VTK to propagate property keys down VTK assemblies and prop assemblies
Nov 13 2019, 12:37 PM
kislinsk awarded T26653: Github pull request 263 (Forward vtkInformation objects to MITK mappers - allow for VTK depth peeling) a Party Time token.
Nov 13 2019, 12:34 PM · MITK, Noteworthy, Pull Request
kalali added a comment to T26795: scrolling in a 2d render window scrolls simultaneously in all three directions .

I remember having seen this error but I thought I fixed it. Currently, I cannot reproduce it, using the latest master 8a6a7a85.
Could you give a precise description of the steps to take in order to reproduce this bug?

Nov 13 2019, 11:57 AM · Noteworthy, MITK

Nov 12 2019

• ramien committed rREGRCNNd5aca31b6e2a: retina_net docstring fix (authored by • ramien).
retina_net docstring fix
Nov 12 2019, 8:37 PM
• ramien committed rREGRCNNa715cd44054a: 2D torch nms as cpp extension compiled from source + analysis file for… (authored by • ramien).
2D torch nms as cpp extension compiled from source + analysis file for…
Nov 12 2019, 8:37 PM
• kirchnth triaged T26808: mitkPhotoacousticVolumeTest fails on Ubuntu (only) as Normal priority.
Nov 12 2019, 5:48 PM · MITK, Photoacoustics
• kirchnth closed T26798: mitkPAFilterServiceTest fails as Resolved.
Nov 12 2019, 5:45 PM · MITK, Photoacoustics
jaegerp added a member for Medical Detection Toolkit: m113r.
Nov 12 2019, 2:42 PM

Nov 11 2019

• kirchnth committed rMITK8a6a7a858b95: Merge branch 'T26759-radiusfixforrealz' (authored by • kirchnth).
Merge branch 'T26759-radiusfixforrealz'
Nov 11 2019, 7:02 PM
• kirchnth committed rMITK5e48a9541d24: Merge branch 'master' of https://phabricator.mitk.org/source/mitk (authored by • kirchnth).
Merge branch 'master' of https://phabricator.mitk.org/source/mitk
Nov 11 2019, 7:02 PM
• kirchnth committed rMITKa0185365fe79: fixed usedLines on GPU + minor cleanup (authored by • kirchnth).
fixed usedLines on GPU + minor cleanup
Nov 11 2019, 6:58 PM
• kirchnth committed rMITK52ea3168637f: elementPositions[] went out of range causing weird apparent apodization (authored by • kirchnth).
elementPositions[] went out of range causing weird apparent apodization
Nov 11 2019, 5:29 PM
• kleina triaged T26805: Make the MPI master work as well as Wishlist priority.
Nov 11 2019, 10:56 AM · Hyppopy

Nov 9 2019

floca committed rOBSHYPPOPYadb51dafb1a2: Feedback on first draft (authored by floca).
Feedback on first draft
Nov 9 2019, 11:17 PM

Nov 8 2019

• kirchnth committed rMITK49ac2ed488ee: rewrote that code because we couldn't understand it - there are still issues WIP (authored by • kirchnth).
rewrote that code because we couldn't understand it - there are still issues WIP
Nov 8 2019, 6:49 PM
• ramien committed rREGRCNN6014ac9dd762: nms rewriting in c++, cuda in the very beginning (authored by • ramien).
nms rewriting in c++, cuda in the very beginning
Nov 8 2019, 6:46 PM
kalali renamed T26801: Github pull request 243 (Details dialog close button) from Use "Close" instead of "Cancel" for button text in details dialog to Github pull request 243 (Details dialog close button).
Nov 8 2019, 4:27 PM · Auto-closed, Pull Request, MITK
kalali triaged T26801: Github pull request 243 (Details dialog close button) as Normal priority.
Nov 8 2019, 4:21 PM · Auto-closed, Pull Request, MITK
eisenman closed T26769: Initialize all member variables in NavigationDataRecorder as Resolved.
Nov 8 2019, 4:18 PM · IGT, MITK
eisenman committed rMITKf0bd2ff98ff9: Merge branch 'T26769-NavigationDataRecorderInitialization' (authored by eisenman).
Merge branch 'T26769-NavigationDataRecorderInitialization'
Nov 8 2019, 4:17 PM
eisenman closed T26770: Fix typos in QmitkInteractiveTransformationWidget as Resolved.
Nov 8 2019, 3:43 PM · IGT, MITK
eisenman committed rMITK23dc0755231e: Merge branch 'T26770-FixTyposInQmitkInteractiveTransformationWidget' (authored by eisenman).
Merge branch 'T26770-FixTyposInQmitkInteractiveTransformationWidget'
Nov 8 2019, 3:42 PM
eisenman moved T26769: Initialize all member variables in NavigationDataRecorder from Backlog to In Progress on the IGT board.
Nov 8 2019, 3:18 PM · IGT, MITK
eisenman moved T26770: Fix typos in QmitkInteractiveTransformationWidget from Backlog to In Progress on the IGT board.
Nov 8 2019, 3:18 PM · IGT, MITK
• kirchnth committed rMITKd66b6b5b92dc: this should fix the test issue by replication of the behavior of GPU code on… (authored by • kirchnth).
this should fix the test issue by replication of the behavior of GPU code on…
Nov 8 2019, 3:13 PM
• kirchnth added a reverting change for rMITKc5c54c6401e3: something we tried out - but it broke apodization: rMITK7d111b31db9b: Revert "something we tried out - but it broke apodization".
Nov 8 2019, 3:13 PM
• kirchnth committed rMITK7d111b31db9b: Revert "something we tried out - but it broke apodization" (authored by • kirchnth).
Revert "something we tried out - but it broke apodization"
Nov 8 2019, 3:13 PM
eisenman closed T26564: Workbench crashes when calibrate button in point-based calibration tab is clicked as Resolved.
Nov 8 2019, 3:09 PM · IGT, MITK
eisenman committed rMITKbb638995408a: Merge branch 'T26564-CalibrateButtonCrash' (authored by eisenman).
Merge branch 'T26564-CalibrateButtonCrash'
Nov 8 2019, 3:08 PM
• kirchnth committed rMITKc5c54c6401e3: something we tried out - but it broke apodization (authored by • kirchnth).
something we tried out - but it broke apodization
Nov 8 2019, 1:05 PM
• kirchnth committed rMITKf3ffab2e6e6a: minor leftover gui issue (authored by • kirchnth).
minor leftover gui issue
Nov 8 2019, 9:51 AM
• kirchnth added a reverting change for rMITK712937da269b: this fixes a minor leftover style issue in the plugin: rMITK1eadc1a7d2ca: Revert "this fixes a minor leftover style issue in the plugin".
Nov 8 2019, 9:51 AM
• kirchnth committed rMITK1eadc1a7d2ca: Revert "this fixes a minor leftover style issue in the plugin" (authored by • kirchnth).
Revert "this fixes a minor leftover style issue in the plugin"
Nov 8 2019, 9:51 AM
• kirchnth committed rMITK712937da269b: this fixes a minor leftover style issue in the plugin (authored by • kirchnth).
this fixes a minor leftover style issue in the plugin
Nov 8 2019, 9:51 AM
• kirchnth triaged T26798: mitkPAFilterServiceTest fails as High priority.

sorry that this took me a month to get to

Nov 8 2019, 9:35 AM · MITK, Photoacoustics
• kirchnth added a comment to T26798: mitkPAFilterServiceTest fails.

this is due to radius behavior changes

Nov 8 2019, 9:34 AM · MITK, Photoacoustics
• kirchnth created T26798: mitkPAFilterServiceTest fails.
Nov 8 2019, 9:33 AM · MITK, Photoacoustics

Nov 7 2019

• kirchnth placed T23189: Saving large (nrrd) files is ridiculously slow due to compression up for grabs.
Nov 7 2019, 5:30 PM · MITK
• kirchnth closed T26683: make ippai modularerer as Wontfix.
Nov 7 2019, 5:28 PM · IMSY, Photoacoustics
• kirchnth closed T26797: PA Beamforming Plugin redesign as Resolved.
Nov 7 2019, 5:13 PM · Photoacoustics, MITK
• kirchnth committed rMITKd3cd783b76af: Merge branch 'T26797-redesignPAplugin' (authored by • kirchnth).
Merge branch 'T26797-redesignPAplugin'
Nov 7 2019, 3:56 PM
• kirchnth committed rMITK5fc6c8f501a8: some more tooltips and minor changes (authored by • kirchnth).
some more tooltips and minor changes
Nov 7 2019, 3:55 PM
• kirchnth committed rMITK0cfd3226413b: redesigned UI for PA image processing and set new sensible defaults and… (authored by • kirchnth).
redesigned UI for PA image processing and set new sensible defaults and…
Nov 7 2019, 3:21 PM
• kirchnth added a comment to T26797: PA Beamforming Plugin redesign.

Pushed new branch T26797-redesignPAplugin.

Nov 7 2019, 3:21 PM · Photoacoustics, MITK
• kirchnth triaged T26797: PA Beamforming Plugin redesign as Wishlist priority.
Nov 7 2019, 12:47 PM · Photoacoustics, MITK
• kirchnth closed T26796: PA Beamforming writes the bf result of the first Slice in all Slices as Resolved.
Nov 7 2019, 12:44 PM · Photoacoustics, MITK
• kirchnth closed T26785: camiPhotoacousticsWorkstation build config does not build Commandline Tool as Resolved.
Nov 7 2019, 12:43 PM · MITK, Photoacoustics
• kirchnth committed rMITK3899f0a19eb9: camiPhotoacousticsWorkstation buildconfig does not build the relevant command… (authored by • kirchnth).
camiPhotoacousticsWorkstation buildconfig does not build the relevant command…
Nov 7 2019, 12:43 PM
wasserth added a member for Deep Learning: m113r.
Nov 7 2019, 9:59 AM
wasserth added a member for MIC: m113r.
Nov 7 2019, 9:59 AM

Nov 6 2019

• kirchnth committed rMITK40e7fb0dd829: Merge branch 'T26796-openclindexfix' (authored by • kirchnth).
Merge branch 'T26796-openclindexfix'
Nov 6 2019, 6:21 PM
• kirchnth committed rMITK58735c09042a: fixed an index that caused reading from slice 0 always (authored by • kirchnth).
fixed an index that caused reading from slice 0 always
Nov 6 2019, 6:20 PM
• kirchnth added a comment to T26796: PA Beamforming writes the bf result of the first Slice in all Slices.

Pushed new branch T26796-openclindexfix.

Nov 6 2019, 6:20 PM · Photoacoustics, MITK
• kirchnth committed rMITK542c14204f31: the slice index was missing in DAS.cl for curved arrays ... fixed that oversight (authored by • kirchnth).
the slice index was missing in DAS.cl for curved arrays ... fixed that oversight
Nov 6 2019, 6:13 PM
• kirchnth added a comment to T26796: PA Beamforming writes the bf result of the first Slice in all Slices.

Pushed new branch T26796-opencloversightfixed.

Nov 6 2019, 6:13 PM · Photoacoustics, MITK
• kirchnth added a comment to T26796: PA Beamforming writes the bf result of the first Slice in all Slices.

traced the error to the DAS.cl

Nov 6 2019, 5:43 PM · Photoacoustics, MITK
• kirchnth updated subscribers of T26796: PA Beamforming writes the bf result of the first Slice in all Slices.
Nov 6 2019, 5:21 PM · Photoacoustics, MITK
• kirchnth triaged T26796: PA Beamforming writes the bf result of the first Slice in all Slices as High priority.
Nov 6 2019, 5:19 PM · Photoacoustics, MITK
• kirchnth added a revision to T26785: camiPhotoacousticsWorkstation build config does not build Commandline Tool: Unknown Object (Differential Revision).
Nov 6 2019, 4:17 PM · MITK, Photoacoustics
• kirchnth committed rMITKbf78254487a4: included command line tools in build configuration (authored by • kirchnth).
included command line tools in build configuration
Nov 6 2019, 2:57 PM
• kirchnth added a comment to T26785: camiPhotoacousticsWorkstation build config does not build Commandline Tool.

Pushed new branch T26785-incluceCLtoolsInBuildConfig.

Nov 6 2019, 2:57 PM · MITK, Photoacoustics
• kirchnth added a project to T26785: camiPhotoacousticsWorkstation build config does not build Commandline Tool: MITK.
Nov 6 2019, 2:57 PM · MITK, Photoacoustics
• kirchnth added a comment to T26795: scrolling in a 2d render window scrolls simultaneously in all three directions .

also occurs in clean build - in addition: opening the Workbench for the first time after build causes a crash

Nov 6 2019, 2:35 PM · Noteworthy, MITK
• kirchnth added a comment to T26795: scrolling in a 2d render window scrolls simultaneously in all three directions .

note that I did not use a clean build

Nov 6 2019, 2:30 PM · Noteworthy, MITK
• kirchnth triaged T26795: scrolling in a 2d render window scrolls simultaneously in all three directions as High priority.
Nov 6 2019, 2:29 PM · Noteworthy, MITK
kislinsk removed a member for Deep Learning: • steint.
Nov 6 2019, 1:04 PM
kislinsk removed a member for Deep Learning: • wirkert.
Nov 6 2019, 1:03 PM
kislinsk removed a member for Deep Learning: • waibel.
Nov 6 2019, 1:03 PM
kislinsk removed a member for Deep Learning: • greinerm.
Nov 6 2019, 1:02 PM
j762e updated subscribers of T26790: Workbench crashes when clearing chart data in ChartExample.
Nov 6 2019, 10:44 AM · Auto-closed, Restricted Project, MITK
kislinsk added a comment to T26653: Github pull request 263 (Forward vtkInformation objects to MITK mappers - allow for VTK depth peeling).

Also PointSets have a similar problem with opacity now.

Nov 6 2019, 10:42 AM · MITK, Noteworthy, Pull Request
kalali closed T26779: Convert QmitkIGTTrackingLabView to UTF-8 as Resolved.
Nov 6 2019, 10:41 AM · IGT, MITK
eisenman added a comment to T26779: Convert QmitkIGTTrackingLabView to UTF-8.

It works with the current master branch.

Nov 6 2019, 10:12 AM · IGT, MITK

Nov 5 2019

kislinsk created Git LFS.
Nov 5 2019, 2:52 PM
• ramien committed rREGRCNN50df437f88b1: retina_net docstring fix (authored by • ramien).
retina_net docstring fix
Nov 5 2019, 2:27 PM
j762e committed rMITK026358ce529e: Set LabelInfo text to red (authored by j762e).
Set LabelInfo text to red
Nov 5 2019, 2:25 PM
j762e triaged T26790: Workbench crashes when clearing chart data in ChartExample as Normal priority.
Nov 5 2019, 2:12 PM · Auto-closed, Restricted Project, MITK
• kleina committed rOBSHYPPOPY7aafa3c76728: get_candidate_list is static now (authored by • kleina).
get_candidate_list is static now
Nov 5 2019, 2:11 PM
• kleina committed rOBSHYPPOPY9fef26354805: Had to change some member initialization which was originally done in the run… (authored by • kleina).
Had to change some member initialization which was originally done in the run…
Nov 5 2019, 2:11 PM
• kleina committed rOBSHYPPOPY749e409d0b62: added mpi4py to the project requirements. (authored by • kleina).
added mpi4py to the project requirements.
Nov 5 2019, 2:11 PM
• kleina committed rOBSHYPPOPY5501c757a11e: Added method get_candidate_list to GridsearchSolver. At the moment, this is the… (authored by • kleina).
Added method get_candidate_list to GridsearchSolver. At the moment, this is the…
Nov 5 2019, 2:11 PM
• kleina committed rOBSHYPPOPYf941968f514d: Added MPIBlackboxFunction. At the moment there is not really MPI stuff… (authored by • kleina).
Added MPIBlackboxFunction. At the moment there is not really MPI stuff…
Nov 5 2019, 2:11 PM
• kleina committed rOBSHYPPOPYe066214ed9b1: Added MPI_TAGS enums, that are used for message sending. More convenient than… (authored by • kleina).
Added MPI_TAGS enums, that are used for message sending. More convenient than…
Nov 5 2019, 2:11 PM
• kleina committed rOBSHYPPOPYc35132c17c3a: Added MPISolverwrapper.py. This class wraps a solver and enables it to use mpi. (authored by • kleina).
Added MPISolverwrapper.py. This class wraps a solver and enables it to use mpi.
Nov 5 2019, 2:11 PM
• kleina committed rOBSHYPPOPYfe290b641e94: added mpiplayground.py for prototyping of mpi stuff. (authored by • kleina).
added mpiplayground.py for prototyping of mpi stuff.
Nov 5 2019, 2:11 PM
j762e committed rMITK2ef6a51b13de: Add emplace (authored by j762e).
Add emplace
Nov 5 2019, 1:57 PM
j762e committed rMITKe93ec50c83d7: Adapt HeaderFiles and Setup (authored by j762e).
Adapt HeaderFiles and Setup
Nov 5 2019, 1:57 PM
j762e committed rMITK581ed1167d1a: Adapt AddData() function (authored by j762e).
Adapt AddData() function
Nov 5 2019, 1:57 PM
j762e committed rMITK7aa0559a1250: Add function to update existing data (authored by j762e).
Add function to update existing data
Nov 5 2019, 1:57 PM
j762e committed rMITKea1cf2ffd166: Add new function for adding data (authored by j762e).
Add new function for adding data
Nov 5 2019, 1:57 PM
j762e committed rMITKf98609dac0c1: Modify functions for GUI (authored by j762e).
Modify functions for GUI
Nov 5 2019, 1:57 PM
j762e committed rMITKcdda996996fd: Add Function to update existing data (authored by j762e).
Add Function to update existing data
Nov 5 2019, 1:57 PM
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