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Oct 13 2020

schererj added a project to T27706: Refactor kaapana radiomics workflow to output xml files: Request for Discussion.

@k656s have you heard from @gaoh about the status of this container?
Is there a new one, which is based on the MITK develop branch?

Oct 13 2020, 7:45 PM · Kaapana (internal)
schererj moved T27706: Refactor kaapana radiomics workflow to output xml files from Backlog to Blocked on the Kaapana (internal) (Open Source Rocketplant) board.
Oct 13 2020, 7:43 PM · Kaapana (internal)
kalali moved T27873: Extend "Checkliste Segmentierung – Interpolation" from Backlog to Segmentation on the MITK (v2021.02) board.
Oct 13 2020, 3:38 PM · MITK (v2022.04), Cleared
kalali triaged T27873: Extend "Checkliste Segmentierung – Interpolation" as High priority.
Oct 13 2020, 3:36 PM · MITK (v2022.04), Cleared
kalali added a comment to T27850: Extend "Checkliste Segmentierung – 3D Segmentierung".

Similar to T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung" I updated the document and added content to explicitly tests different image types / segmentation types.
Additionally I tried to make both checklists more consistent.

Oct 13 2020, 3:34 PM · MITK (v2022.04), Cleared
kalali added a comment to T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation.

So Region Growing 3D seems to work and could probably be used for reference for other algorithms.

Oct 13 2020, 2:42 PM · MITK (v2021.10), Missing Info, Restricted Project
kalali triaged T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox as Normal priority.
Oct 13 2020, 2:41 PM · MITK (v2022.10), Cleared
kalali created T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox.
Oct 13 2020, 2:41 PM · MITK (v2022.10), Cleared
kalali removed a subtask for T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation: T27870: [Segmentation] Fast Marching 3D Tool can not clear preview segmentation masks.
Oct 13 2020, 2:36 PM · MITK (v2021.10), Missing Info, Restricted Project
kalali removed a parent task for T27870: [Segmentation] Fast Marching 3D Tool can not clear preview segmentation masks: T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation.
Oct 13 2020, 2:36 PM · MITK (v2021.02)
floca triaged T27871: [Registration] Mapper should only autoselect Reference if it is an image as Normal priority.
Oct 13 2020, 2:08 PM · Moved to git.dkfz.de, MITK (v2024.12)
kalali renamed T27870: [Segmentation] Fast Marching 3D Tool can not clear preview segmentation masks from {Segmentation] Fast Marching 3D Tool can not clear preview segmentation masks to [Segmentation] Fast Marching 3D Tool can not clear preview segmentation masks.
Oct 13 2020, 1:01 PM · MITK (v2021.02)
kalali moved T27870: [Segmentation] Fast Marching 3D Tool can not clear preview segmentation masks from Backlog to Segmentation on the MITK (v2021.02) board.
Oct 13 2020, 12:22 PM · MITK (v2021.02)
kalali triaged T27870: [Segmentation] Fast Marching 3D Tool can not clear preview segmentation masks as Normal priority.
Oct 13 2020, 12:22 PM · MITK (v2021.02)
kislinsk added a project to T26897: Build error: Could not find git for clone of qRestAPI: Noteworthy.
Oct 13 2020, 12:22 PM · Noteworthy, MITK
kislinsk added a comment to T27340: [ModelFit] Request for Mac Workbench installer.

Any details?

Oct 13 2020, 12:21 PM · Auto-closed, Restricted Project, MITK
kislinsk added a comment to T26897: Build error: Could not find git for clone of qRestAPI.

Deleted branch bugfix/T26897-RemoveCustomFindGitModule.

Oct 13 2020, 12:18 PM · Noteworthy, MITK
kislinsk closed T26897: Build error: Could not find git for clone of qRestAPI as Resolved.

Should be fixed now.

Oct 13 2020, 12:15 PM · Noteworthy, MITK
kislinsk committed rMITKe02262024ec3: Merge branch 'bugfix/T26897-RemoveCustomFindGitModule' into develop (authored by kislinsk).
Merge branch 'bugfix/T26897-RemoveCustomFindGitModule' into develop
Oct 13 2020, 12:12 PM
kislinsk added a comment to T26897: Build error: Could not find git for clone of qRestAPI.

I wonder how this is related to our findings from December last year.

Oct 13 2020, 11:53 AM · Noteworthy, MITK
kislinsk added a comment to T26897: Build error: Could not find git for clone of qRestAPI.

Pushed new branch bugfix/T26897-RemoveCustomFindGitModule.

Oct 13 2020, 11:38 AM · Noteworthy, MITK
kalali added a comment to T26897: Build error: Could not find git for clone of qRestAPI.

I wonder how this is related to our findings from December last year.

Oct 13 2020, 10:51 AM · Noteworthy, MITK
kislinsk added a comment to T26897: Build error: Could not find git for clone of qRestAPI.

I noticed a few things that may be related or not but we should clean them anyway:

Oct 13 2020, 10:45 AM · Noteworthy, MITK
kislinsk closed T27852: [CDash] Add option to clean build directory as Resolved.
Oct 13 2020, 10:27 AM · MITK
kislinsk added a comment to T27852: [CDash] Add option to clean build directory.

Deleted branch feature/T27852-CDashAddOptionToCleanDirs.

Oct 13 2020, 10:27 AM · MITK
kislinsk committed rMITKaabd0623f1d6: Merge branch 'feature/T27852-CDashAddOptionToCleanDirs' into develop (authored by kislinsk).
Merge branch 'feature/T27852-CDashAddOptionToCleanDirs' into develop
Oct 13 2020, 10:26 AM
kislinsk added a comment to T27852: [CDash] Add option to clean build directory.

You can add the following options to your configuration script:

Oct 13 2020, 10:25 AM · MITK
kislinsk added a comment to T27852: [CDash] Add option to clean build directory.

Pushed new branch feature/T27852-CDashAddOptionToCleanDirs.

Oct 13 2020, 10:22 AM · MITK
neher added a comment to T26897: Build error: Could not find git for clone of qRestAPI.

Seems to be resolved by setting

"GIT_EXECUTABLE:FILEPATH=/usr/bin/git"

in MITKDashboardScript.cmake

Oct 13 2020, 10:04 AM · Noteworthy, MITK
kislinsk moved T27844: CDash links to commits in phabricator seems not to work correctly from Restricted Project Column to Restricted Project Column on the Restricted Project board.
Oct 13 2020, 9:41 AM · Restricted Project, Restricted Project, MITK
kompan reopened T27340: [ModelFit] Request for Mac Workbench installer as "Open".

Jerome Devy reported problems with the installation on 12th October 2020.

Oct 13 2020, 8:37 AM · Auto-closed, Restricted Project, MITK
neher added a comment to T26897: Build error: Could not find git for clone of qRestAPI.

yes, openstack

Oct 13 2020, 8:34 AM · Noteworthy, MITK

Oct 12 2020

kislinsk added a comment to T26897: Build error: Could not find git for clone of qRestAPI.

May be completely unrelated but who knows: https://cmake.org/pipermail/cmake-developers/2015-November/027082.html

Oct 12 2020, 11:44 PM · Noteworthy, MITK
aguilera moved T27829: [shiny] Disabling button "Next" when a text field is empty from Backlog to Done on the webChallengeR board.
Oct 12 2020, 10:54 PM · webChallengeR
aguilera moved T27842: [shiny] Error while generating single-task report from Backlog to Done on the webChallengeR board.
Oct 12 2020, 5:09 PM · webChallengeR
wiesenfa added a comment to T27708: ggplot2 dendrogram .

disadvantage would be dependency on another package facilitating ggplot2 dendrograms

Oct 12 2020, 2:30 PM · challengeR
wiesenfa added a comment to T27708: ggplot2 dendrogram .

current implementation is fine. However, we said it would be nice if all plots (if directly called by users and not within the report) would have the same syntax and could be layouted with ggplot2 syntax. current implementation is using basic R graphics.

Oct 12 2020, 2:30 PM · challengeR
wiesenfa added a comment to T27326: autolayout networks in multi task report ugly.

turned off in v1.0, everything else postponed

Oct 12 2020, 2:27 PM · challengeR
reinkea added a comment to T27326: autolayout networks in multi task report ugly.

I also agree!

Oct 12 2020, 1:47 PM · challengeR
reinkea added a comment to T27794: Stacked frequency plots should switch to single page layout.

People that are not from the statistics community might find them easier to read and interpret. I would be in favour of keeping them in the reports. We used the plots in one of our papers.

Oct 12 2020, 1:44 PM · challengeR (v1.0)
eisenman added a comment to T27708: ggplot2 dendrogram .

What is the issue with the current implementation?

Oct 12 2020, 1:28 PM · challengeR
e148c moved T27867: report corrections from In Progress to Done on the challengeR board.
Oct 12 2020, 1:19 PM · challengeR (v1.0)
e148c committed rCHALLENGER1150961eecaa: Merge branch 'feature/T27867-reportCorrections' into develop (authored by e148c).
Merge branch 'feature/T27867-reportCorrections' into develop
Oct 12 2020, 1:18 PM
e148c committed rCHALLENGER6460c5c9d27c: language corrections in the report (authored by e148c).
language corrections in the report
Oct 12 2020, 1:18 PM
e148c moved T27867: report corrections from Backlog to In Progress on the challengeR board.
Oct 12 2020, 12:53 PM · challengeR (v1.0)
e148c created T27867: report corrections.
Oct 12 2020, 12:53 PM · challengeR (v1.0)
neher added a comment to T26897: Build error: Could not find git for clone of qRestAPI.

This just occurred on my ubuntu dartclients. Any idea how to fix this in MITKDashboardScript.cmake?
https://cdash.mitk.org/index.php?project=MITK-Diffusion

Oct 12 2020, 11:40 AM · Noteworthy, MITK
kislinsk triaged T27852: [CDash] Add option to clean build directory as Low priority.
Oct 12 2020, 11:15 AM · MITK
kompan edited projects for T27745: [MITKDoc] Revise Model Fit Generic View Documentation, added: Next Milestone, MITK; removed MITK (v2021.02).
Oct 12 2020, 10:53 AM · MITK (v2022.04)
kislinsk updated the task description for T27851: Unhide label presets.
Oct 12 2020, 10:52 AM · MITK (v2021.02)
kislinsk triaged T27851: Unhide label presets as High priority.
Oct 12 2020, 10:51 AM · MITK (v2021.02)
kalali moved T27850: Extend "Checkliste Segmentierung – 3D Segmentierung" from Backlog to Segmentation on the MITK (v2021.02) board.
Oct 12 2020, 10:51 AM · MITK (v2022.04), Cleared
kompan edited projects for T27847: [MITKDoc] Chart Example view documentation, added: Next Milestone, MITK; removed MITK (v2021.02).
Oct 12 2020, 10:50 AM · Moved to git.dkfz.de, MITK (v2024.12)
kompan added a comment to T27847: [MITKDoc] Chart Example view documentation.

Sounds good to me (the view just came up in T27563, so I thought I should open a task that it doesn't get forgotten about). It has low priority though at the moment and it makes sense to tag it with "next milestone".

Oct 12 2020, 10:50 AM · Moved to git.dkfz.de, MITK (v2024.12)
kalali triaged T27850: Extend "Checkliste Segmentierung – 3D Segmentierung" as High priority.
Oct 12 2020, 10:47 AM · MITK (v2022.04), Cleared
kalali added a comment to T27847: [MITKDoc] Chart Example view documentation.

Should we put this on "Next Milestone" since the chart example will probably not be included in any installer?

Oct 12 2020, 10:43 AM · Moved to git.dkfz.de, MITK (v2024.12)
kalali moved T27847: [MITKDoc] Chart Example view documentation from Backlog to Documentation on the MITK (v2021.02) board.
Oct 12 2020, 10:41 AM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T27849: MITK extensions do not work in CDash script on Linux and macOS as Resolved.
Oct 12 2020, 10:35 AM · MITK
kislinsk added a comment to T27849: MITK extensions do not work in CDash script on Linux and macOS.

Deleted branch hotfix/T27849-MITKExtensionsInCDashScriptOnUnix.

Oct 12 2020, 10:34 AM · MITK
kislinsk committed rMITK105f7104f504: Merge branch 'hotfix/T27849-MITKExtensionsInCDashScriptOnUnix' (authored by kislinsk).
Merge branch 'hotfix/T27849-MITKExtensionsInCDashScriptOnUnix'
Oct 12 2020, 10:34 AM
kislinsk committed rMITKd3ce78442e93: Merge branch 'hotfix/T27849-MITKExtensionsInCDashScriptOnUnix' into develop (authored by kislinsk).
Merge branch 'hotfix/T27849-MITKExtensionsInCDashScriptOnUnix' into develop
Oct 12 2020, 10:34 AM
kislinsk added a comment to T27849: MITK extensions do not work in CDash script on Linux and macOS.

Pushed new branch hotfix/T27849-MITKExtensionsInCDashScriptOnUnix.

Oct 12 2020, 10:33 AM · MITK
kislinsk updated the task description for T27849: MITK extensions do not work in CDash script on Linux and macOS.
Oct 12 2020, 10:23 AM · MITK
kislinsk triaged T27849: MITK extensions do not work in CDash script on Linux and macOS as Unbreak Now! priority.
Oct 12 2020, 10:23 AM · MITK
eisenman moved T27278: Writing documentation for main functions from Backlog to In Progress on the challengeR (v1.0) board.
Oct 12 2020, 9:47 AM · challengeR (v1.0)
kislinsk added a comment to T27844: CDash links to commits in phabricator seems not to work correctly.

https://github.com/Kitware/CDash/issues/514

Oct 12 2020, 9:35 AM · Restricted Project, Restricted Project, MITK
kislinsk reopened T27844: CDash links to commits in phabricator seems not to work correctly as "Open".

Oh, I just noticed an "Add repository" button in CDash. There may be the possibility to actually report revisions of more than one repository. Let me check that... :-)

Oct 12 2020, 9:31 AM · Restricted Project, Restricted Project, MITK
kislinsk committed rMITK3fda52eea343: Fix view IDs (authored by kislinsk).
Fix view IDs
Oct 12 2020, 9:23 AM
kislinsk committed rMITKbfcb35e9c997: Remove reference to non-existent documentation page (authored by kislinsk).
Remove reference to non-existent documentation page
Oct 12 2020, 9:22 AM
kislinsk closed T27563: Help link (pressing F1) is partially broken as Resolved by committing rMITK3fda52eea343: Fix view IDs.
Oct 12 2020, 9:22 AM · MITK (v2021.02)
kislinsk committed rMITK82224f11595f: Fix view IDs in MITKPluginGeneralManualsList (authored by kislinsk).
Fix view IDs in MITKPluginGeneralManualsList
Oct 12 2020, 9:22 AM
kislinsk committed rMITKff7d74aa8123: Fix view IDs (authored by kislinsk).
Fix view IDs
Oct 12 2020, 9:22 AM
kislinsk closed T27844: CDash links to commits in phabricator seems not to work correctly as Resolved.

Done. @floca, if you do not agree, please reopen.

Oct 12 2020, 9:22 AM · Restricted Project, Restricted Project, MITK
kislinsk added a comment to T27844: CDash links to commits in phabricator seems not to work correctly.

I looked into the CDash script and to basically "swap" the primary repository would induce many many new lines of code. Hence, I vote for "let's always keep MITK as primary repository that reports its revision but change the CDash settings to the MITK repository instead of the MITK extension's repository". Tl;dr: Make the revision links work in the web UI but they will always link to MITK, not an MITK extension.

Oct 12 2020, 9:19 AM · Restricted Project, Restricted Project, MITK
kompan triaged T27847: [MITKDoc] Chart Example view documentation as Low priority.
Oct 12 2020, 9:02 AM · Moved to git.dkfz.de, MITK (v2024.12)
kompan triaged T27846: [MITKDoc] Segmentation Flow view documentation as Low priority.
Oct 12 2020, 8:59 AM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk triaged T27844: CDash links to commits in phabricator seems not to work correctly as Normal priority.
Oct 12 2020, 12:36 AM · Restricted Project, Restricted Project, MITK
kislinsk claimed T27844: CDash links to commits in phabricator seems not to work correctly.
Oct 12 2020, 12:32 AM · Restricted Project, Restricted Project, MITK
kislinsk added a comment to T27844: CDash links to commits in phabricator seems not to work correctly.

The quick fix would be to change the repository base URL in the CDash project settings to MITK but I guess the preferred solution may be something like a setting in the MITK CDash script to decide if MITK should be the repository of interest or an MITK extension should be the repository of interest. Thinking about it, it probably must be a combination of CDash project settings and CDash script as we cannot change project settings from script but probably we can somehow achieve to report a revision from another repository than MITK in the update step.

Oct 12 2020, 12:31 AM · Restricted Project, Restricted Project, MITK
kislinsk added projects to T27844: CDash links to commits in phabricator seems not to work correctly: MITK, Restricted Project, Restricted Project.
Oct 12 2020, 12:26 AM · Restricted Project, Restricted Project, MITK

Oct 11 2020

floca created T27844: CDash links to commits in phabricator seems not to work correctly.
Oct 11 2020, 12:43 PM · Restricted Project, Restricted Project, MITK
amancino90 added a comment to T27663: Crosshair navigation not disabled in QmitkMeasurementView .

I'm currently in develop branch (0d336d68).
What I meant to say is that, from what I see in QmitkMeasurementView, the crosshair navigation should be limited when placing a figure. However, the method QmitkMeasurementView::DisableCrosshairNavigation() fails to load the limited display interactor.

Oct 11 2020, 2:32 AM · Breaking Change, MITK

Oct 9 2020

eisenman triaged T27842: [shiny] Error while generating single-task report as High priority.
Oct 9 2020, 3:18 PM · webChallengeR
aguilera moved T27838: [shiny] Add configuration option to indicate order of metric values from In Progress to Done on the webChallengeR board.
Oct 9 2020, 3:08 PM · webChallengeR
e148c moved T27832: Complete troublshooting from In Progress to Done on the challengeR board.
Oct 9 2020, 2:45 PM · challengeR (v1.0)
e148c committed rCHALLENGERe3d41a469d77: Merge branch 'feature/T27832-troubleshooting2' into develop (authored by e148c).
Merge branch 'feature/T27832-troubleshooting2' into develop
Oct 9 2020, 2:44 PM
e148c committed rCHALLENGERab1578e1ce2a: complete troubleshooting (authored by e148c).
complete troubleshooting
Oct 9 2020, 2:44 PM
aguilera moved T27838: [shiny] Add configuration option to indicate order of metric values from Backlog to In Progress on the webChallengeR board.
Oct 9 2020, 2:37 PM · webChallengeR
kalali closed T27721: [Segmentation] 2D Fast Marching crashes with 4D image and static segmentation, a subtask of T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation, as Resolved.
Oct 9 2020, 2:36 PM · MITK (v2021.10), Missing Info, Restricted Project
kalali closed T27721: [Segmentation] 2D Fast Marching crashes with 4D image and static segmentation as Resolved.
Oct 9 2020, 2:36 PM · MITK (v2021.02)
kalali added a comment to T27721: [Segmentation] 2D Fast Marching crashes with 4D image and static segmentation.

I landed the changes of D423. For the next steps, consider T27507#211912.

Oct 9 2020, 2:36 PM · MITK (v2021.02)
kalali committed rMITKece31f3c79b9: 2D Fast Marching segmentation crashes with 4D image and static segmentation (authored by kalali).
2D Fast Marching segmentation crashes with 4D image and static segmentation
Oct 9 2020, 2:35 PM
kalali committed rMITKa3e155361a43: Transform current time step from reference image to working image (authored by kalali).
Transform current time step from reference image to working image
Oct 9 2020, 2:35 PM
kalali closed T27800: [Segmentation] Live Wire crashes with 4D image and static segmentation, a subtask of T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation, as Resolved.
Oct 9 2020, 2:33 PM · MITK (v2021.10), Missing Info, Restricted Project
kalali closed T27800: [Segmentation] Live Wire crashes with 4D image and static segmentation as Resolved.

I landed the changes of D424. For the next steps, consider T27507#211912.

Oct 9 2020, 2:33 PM · MITK (v2021.02)
kalali committed rMITK98f05ef6825b: Live Wire segmentation crashes with 4D image and static segmentation (authored by kalali).
Live Wire segmentation crashes with 4D image and static segmentation
Oct 9 2020, 2:32 PM
kalali committed rMITKe9da1a8162ac: Transform current time step from reference image to working image (authored by kalali).
Transform current time step from reference image to working image
Oct 9 2020, 2:31 PM
e148c committed rCHALLENGER84da4f5ab191: test complete troubleshooting (authored by e148c).
test complete troubleshooting
Oct 9 2020, 1:58 PM
floca added a parent task for T26953: DICOM SEG - Cannot rewrite segmentations as DICOM SEG: Unknown Object (Maniphest Task).
Oct 9 2020, 1:22 PM · Moved to git.dkfz.de, MITK (v2024.12), Cleared
aguilera moved T27839: [shiny] Second report cannot be downloaded from Backlog to Done on the webChallengeR board.
Oct 9 2020, 1:02 PM · webChallengeR