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Nov 2 2020

eisenman committed rCHALLENGER192c5dedf226: Merge branch 'feature/T27922-RemoveNetworkPlotFromOverview' into develop (authored by eisenman).
Merge branch 'feature/T27922-RemoveNetworkPlotFromOverview' into develop
Nov 2 2020, 4:51 PM
eisenman committed rCHALLENGER3f51b34336f0: Remove network plot from overview (authored by eisenman).
Remove network plot from overview
Nov 2 2020, 4:49 PM
eisenman moved T27922: Remove network plot from report overview from Backlog to In Progress on the challengeR (v1.0) board.
Nov 2 2020, 4:47 PM · challengeR (v1.0)
eisenman created T27922: Remove network plot from report overview.
Nov 2 2020, 4:46 PM · challengeR (v1.0)
kislinsk added a comment to T27920: [MITKDoc] Fix Doxygen warnings.

~ 310 warnings left

Nov 2 2020, 3:46 PM · Noteworthy, MITK (v2021.02)
kislinsk committed rMITKfc799b4fe88f: Merge branch 'bugfix/T27920-ReduceDoxygenWarnings' into develop (authored by kislinsk).
Merge branch 'bugfix/T27920-ReduceDoxygenWarnings' into develop
Nov 2 2020, 3:39 PM
schererj added a member for Kaapana (internal): s429r.
Nov 2 2020, 2:47 PM
kislinsk added a member for MIC: s429r.
Nov 2 2020, 2:34 PM
kislinsk added a member for MIC: kislinsk.
Nov 2 2020, 2:34 PM
kislinsk added a comment to T27920: [MITKDoc] Fix Doxygen warnings.

~ 530 warnings left

Nov 2 2020, 10:58 AM · Noteworthy, MITK (v2021.02)
kislinsk committed rMITKfda8e176b4bf: Merge branch 'bugfix/T27920-ReduceDoxygenWarnings' into develop (authored by kislinsk).
Merge branch 'bugfix/T27920-ReduceDoxygenWarnings' into develop
Nov 2 2020, 10:57 AM
schererj updated the image for Kaapana (internal) from F1910035: profile to F1910040: profile.
Nov 2 2020, 9:21 AM
schererj updated the image for Kaapana (internal) from F1910033: profile to F1910035: profile.
Nov 2 2020, 9:18 AM
schererj updated the image for Kaapana (internal) from F1453107: profile to F1910033: profile.
Nov 2 2020, 9:17 AM
kislinsk committed rMITKa77c2be4345b: Merge branch 'bugfix/T27920-ReduceDoxygenWarnings' into develop (authored by kislinsk).
Merge branch 'bugfix/T27920-ReduceDoxygenWarnings' into develop
Nov 2 2020, 12:13 AM

Nov 1 2020

kislinsk committed rMITKa60269258c57: Merge branch 'bugfix/T27920-ReduceDoxygenWarnings' into develop (authored by kislinsk).
Merge branch 'bugfix/T27920-ReduceDoxygenWarnings' into develop
Nov 1 2020, 11:52 PM
kislinsk committed rMITK8909ec8fb206: Merge branch 'bugfix/T27920-ReduceDoxygenWarnings' into develop (authored by kislinsk).
Merge branch 'bugfix/T27920-ReduceDoxygenWarnings' into develop
Nov 1 2020, 11:44 PM
kislinsk committed rMITK7f3e45e4ea63: Merge branch 'bugfix/T27920-ReduceDoxygenWarnings' into develop (authored by kislinsk).
Merge branch 'bugfix/T27920-ReduceDoxygenWarnings' into develop
Nov 1 2020, 11:37 PM
kislinsk added a comment to T27614: Equalize reinit behavior of Segmentation View and Multilabel Segmentation View.

Not easy to answer. Reinit can be a rather disruptive operation canceling the users positioning of the cross hair for example. So it would be polite to ask I guess. On the other hand, the user obviously want to create a segmentation so (s)he hasn't any chance to prevent that. So I vote for the less chatty approach without asking.

Nov 1 2020, 11:34 PM · MITK
kislinsk added a comment to T27920: [MITKDoc] Fix Doxygen warnings.

~ 750 warnings left

Nov 1 2020, 11:27 PM · Noteworthy, MITK (v2021.02)
floca added a comment to T27614: Equalize reinit behavior of Segmentation View and Multilabel Segmentation View.

@kislinsk do you have an opionon which option to choose UX wise?

Nov 1 2020, 10:16 PM · MITK
floca committed rRTTB391f55d2fc66: First implementation of gamma index (authored by floca).
First implementation of gamma index
Nov 1 2020, 9:52 PM
floca committed rRTTBfe85d66593ba: Extracted test dummies/mock from CoreTest into TestHelper module (authored by floca).
Extracted test dummies/mock from CoreTest into TestHelper module
Nov 1 2020, 9:52 PM
floca committed rRTTB869649c3f886: Fixed warnings in tests (authored by floca).
Fixed warnings in tests
Nov 1 2020, 9:52 PM
floca committed rRTTBd2bec0ef14e6: Added accessor getter to interpolator base. (authored by floca).
Added accessor getter to interpolator base.
Nov 1 2020, 9:52 PM
floca committed rRTTB18108ef5b9f0: Improved const correctness and parameter passing. (authored by floca).
Improved const correctness and parameter passing.
Nov 1 2020, 9:52 PM
floca committed rRTTB4a6d77f0e383: Added clone functionality to GeometricInfo. (authored by floca).
Added clone functionality to GeometricInfo.
Nov 1 2020, 9:52 PM
floca committed rRTTB779c333ac91c: Started with gamma index draft (unfinished) (authored by floca).
Started with gamma index draft (unfinished)
Nov 1 2020, 9:52 PM
kislinsk committed rMITK61ac3494016f: Merge branch 'bugfix/T27920-ReduceDoxygenWarnings' into develop (authored by kislinsk).
Merge branch 'bugfix/T27920-ReduceDoxygenWarnings' into develop
Nov 1 2020, 8:18 AM

Oct 31 2020

kislinsk committed rMITK99cf2159c4cf: Merge branch 'bugfix/T27920-ReduceDoxygenWarnings' into develop (authored by kislinsk).
Merge branch 'bugfix/T27920-ReduceDoxygenWarnings' into develop
Oct 31 2020, 11:43 PM
kislinsk committed rMITK266ca1b252ec: Merge branch 'bugfix/T27920-ReduceDoxygenWarnings' into develop (authored by kislinsk).
Merge branch 'bugfix/T27920-ReduceDoxygenWarnings' into develop
Oct 31 2020, 7:33 AM

Oct 30 2020

kislinsk added a project to T27920: [MITKDoc] Fix Doxygen warnings: Noteworthy.

We do not need Ant and the BlueBerryDocTools anymore since I have migrated the extension-point reference documentation mechanism to Doxygen.

Oct 30 2020, 11:30 PM · Noteworthy, MITK (v2021.02)
kislinsk committed rMITK0a90f17503a9: Merge branch 'bugfix/T27920-ReduceDoxygenWarnings' into develop (authored by kislinsk).
Merge branch 'bugfix/T27920-ReduceDoxygenWarnings' into develop
Oct 30 2020, 11:29 PM
kislinsk added a comment to T27920: [MITKDoc] Fix Doxygen warnings.

Pushed new branch bugfix/T27920-ReduceDoxygenWarnings.

Oct 30 2020, 11:46 AM · Noteworthy, MITK (v2021.02)
kislinsk updated subscribers of T27920: [MITKDoc] Fix Doxygen warnings.
Oct 30 2020, 9:24 AM · Noteworthy, MITK (v2021.02)
kislinsk merged T27387: Link in Documentation wrong into T27920: [MITKDoc] Fix Doxygen warnings.
Oct 30 2020, 7:15 AM · Noteworthy, MITK (v2021.02)
kislinsk merged task T27387: Link in Documentation wrong into T27920: [MITKDoc] Fix Doxygen warnings.
Oct 30 2020, 7:15 AM · MITK
kislinsk moved T27920: [MITKDoc] Fix Doxygen warnings from Backlog to Documentation on the MITK (v2021.02) board.
Oct 30 2020, 7:15 AM · Noteworthy, MITK (v2021.02)
kislinsk triaged T27920: [MITKDoc] Fix Doxygen warnings as Normal priority.
Oct 30 2020, 7:15 AM · Noteworthy, MITK (v2021.02)

Oct 29 2020

kislinsk created Kaapana Elevated Branching Privileges.
Oct 29 2020, 4:37 PM
isensee added a member for Deep Learning: full.
Oct 29 2020, 2:37 PM

Oct 28 2020

kislinsk added a comment to T27908: [MITKDoc] Update Multilabel Segmentation documentation regarding label presets.

Deleted branch bugfix/T27908-UpdateMultilabelSegmentationDoc.

Oct 28 2020, 10:41 AM · Cleared, MITK (v2021.02)
kislinsk committed rMITK7e02155bc8ba: Add section about label set presets to multilabel segmentation documentation (authored by kislinsk).
Add section about label set presets to multilabel segmentation documentation
Oct 28 2020, 10:41 AM
kislinsk closed T27908: [MITKDoc] Update Multilabel Segmentation documentation regarding label presets as Resolved by committing rMITK7e02155bc8ba: Add section about label set presets to multilabel segmentation documentation.
Oct 28 2020, 10:40 AM · Cleared, MITK (v2021.02)
kislinsk edited the content of Merging into master Branch.
Oct 28 2020, 7:50 AM
kislinsk closed T27663: Crosshair navigation not disabled in QmitkMeasurementView as Wontfix.

I see. The only implication however is that one is able to scroll through the slices while placing a planar figure while placing control points on different slices is prevented, so I would say this is more like a feature than a bug, as one can look up neighboring slices during placement to support the decision where to exactly place points.

Oct 28 2020, 7:05 AM · Breaking Change, MITK
kislinsk added a comment to T27908: [MITKDoc] Update Multilabel Segmentation documentation regarding label presets.

Pushed new branch bugfix/T27908-UpdateMultilabelSegmentationDoc.

Oct 28 2020, 6:59 AM · Cleared, MITK (v2021.02)
kislinsk closed T27844: CDash links to commits in phabricator seems not to work correctly as Resolved.

As the devs of CDash prefer to stay dead silent about this feature both in the issue linked above and on the mailing list, I think we can make an educated guess that it is not implemented.

Oct 28 2020, 6:56 AM · Restricted Project, Restricted Project, MITK
kislinsk added a revision to T27908: [MITKDoc] Update Multilabel Segmentation documentation regarding label presets: Unknown Object (Differential Revision).
Oct 28 2020, 6:52 AM · Cleared, MITK (v2021.02)

Oct 27 2020

floca added a comment to T27605: Stitching functionality.

Deleted branch feature/T27605-Stitching_filter.

Oct 27 2020, 8:59 AM · Noteworthy, MITK

Oct 26 2020

floca closed T27210: Stitching tool for images as Resolved.

Solved by T27605

Oct 26 2020, 8:41 PM · Restricted Project, Restricted Project
t006d moved T27917: Small 2 Minute Presentation about my work from Backlog to AuxiliaryStuff on the Tassilo Wald board.
Oct 26 2020, 5:26 PM · Tassilo Wald
t006d set the color for Tassilo Wald to Grey.
Oct 26 2020, 5:25 PM
t006d changed the edit policy for T27917: Small 2 Minute Presentation about my work.
Oct 26 2020, 5:25 PM · Tassilo Wald
t006d created T27917: Small 2 Minute Presentation about my work.
Oct 26 2020, 5:23 PM · Tassilo Wald
kislinsk closed T27914: Transform relative MITK extension dirs to absolute dirs as Resolved.
Oct 26 2020, 4:52 PM · MITK
kislinsk added a comment to T27914: Transform relative MITK extension dirs to absolute dirs.

Deleted branch bugfix/T27914-AbsoluteMITKExtensionDirs.

Oct 26 2020, 4:52 PM · MITK
kislinsk committed rMITK659426760b45: Merge branch 'bugfix/T27914-AbsoluteMITKExtensionDirs' into develop (authored by kislinsk).
Merge branch 'bugfix/T27914-AbsoluteMITKExtensionDirs' into develop
Oct 26 2020, 4:51 PM
kislinsk added a comment to T27914: Transform relative MITK extension dirs to absolute dirs.

Pushed new branch bugfix/T27914-AbsoluteMITKExtensionDirs.

Oct 26 2020, 4:49 PM · MITK
kalali added a comment to T27906: Extend "Checkliste Segmentierung – Utilities".

I updated the document and added content to explicitly test

  • utilities / tools / operations on a 3D image
  • combination of 3D images with dynamic segmentation / surface
  • combination of 4D images with static segmentation / surface
  • combination of dynamic and static segmentation
Oct 26 2020, 2:14 PM · MITK (v2022.04), Cleared
reinkea renamed T27915: Podium plot shrinks for long algorithm names from Podium plot is shrinked for long algorithm names to Podium plot shrinks for long algorithm names.
Oct 26 2020, 2:11 PM · challengeR (v1.0)
reinkea created T27915: Podium plot shrinks for long algorithm names.
Oct 26 2020, 2:11 PM · challengeR (v1.0)
kalali updated the task description for T27913: [Segmentation] Warnings in utilities view are inconsistent.
Oct 26 2020, 11:41 AM · MITK (v2024.06)
kislinsk triaged T27914: Transform relative MITK extension dirs to absolute dirs as Unbreak Now! priority.
Oct 26 2020, 11:24 AM · MITK
kalali reopened T17656: ProgressBar for morphological operations as "Open".

I just stumbled upon this while testing the utilities with 4D data. Depending on the number of timesteps and the complexity of the operation the selected operation might take a while (you ca actually see the progress in the console output).
This should be discussed as I do not see any

whole new segmentation functionality this year

Oct 26 2020, 11:21 AM · Auto-closed, Request for Discussion, MITK, Bugzilla
kalali triaged T27913: [Segmentation] Warnings in utilities view are inconsistent as Normal priority.
Oct 26 2020, 11:07 AM · MITK (v2024.06)
kislinsk added a comment to T27910: 2020 Week 43 (Late October).

Deleted branch release/T27910-2020-Week-43.

Oct 26 2020, 11:06 AM · MITK

Oct 23 2020

floca added a parent task for T26953: DICOM SEG - Cannot rewrite segmentations as DICOM SEG: T27178: MITK - DICOM Seg - loaded DCM SEG not associated with referenced DCM .
Oct 23 2020, 6:54 PM · Moved to git.dkfz.de, MITK (v2024.12), Cleared
floca added a subtask for T27178: MITK - DICOM Seg - loaded DCM SEG not associated with referenced DCM : T26953: DICOM SEG - Cannot rewrite segmentations as DICOM SEG.
Oct 23 2020, 6:54 PM · Auto-closed, Missing Info, MITK
floca edited projects for T27178: MITK - DICOM Seg - loaded DCM SEG not associated with referenced DCM , added: Missing Info; removed Request for Discussion.

Removed request for discussion. Nothing to discuss now:
Problem 1: We would neet more information about the specific use case /user story as it should be handled by a dedicated UI/DataStorageInspector (for the SelectionDialog e.g. in the Segmentation Flow)

Oct 23 2020, 6:53 PM · Auto-closed, Missing Info, MITK
kislinsk closed T27910: 2020 Week 43 (Late October) as Resolved.
Oct 23 2020, 5:22 PM · MITK
kislinsk committed rMITK701c8286244c: Merge branch 'master' into develop (authored by kislinsk).
Merge branch 'master' into develop
Oct 23 2020, 5:15 PM
kislinsk committed rMITKf09362ceac6d: 2020 Week 43 (Late October) (authored by kislinsk).
2020 Week 43 (Late October)
Oct 23 2020, 5:14 PM
kislinsk edited the content of Changelog.
Oct 23 2020, 4:57 PM · MITK
kislinsk edited the content of 2020 Week 43 (Late October).
Oct 23 2020, 4:57 PM
kislinsk added a comment to T27910: 2020 Week 43 (Late October).

Pushed new branch release/T27910-2020-Week-43.

Oct 23 2020, 1:40 PM · MITK
kislinsk triaged T27910: 2020 Week 43 (Late October) as Normal priority.
Oct 23 2020, 1:38 PM · MITK
kislinsk created T27910: 2020 Week 43 (Late October).
Oct 23 2020, 1:38 PM · MITK
kislinsk created an object: 2020 Week 43 (Late October).
Oct 23 2020, 1:38 PM
kislinsk closed T27902: Handle slashes in installer names as Resolved.

Slashes are now replaced by underscores.

Oct 23 2020, 1:34 PM · MITK (v2021.02)
kislinsk added a comment to T27902: Handle slashes in installer names.

Deleted branch bugfix/T27902-ReplaceSlashesInInstallerName.

Oct 23 2020, 1:34 PM · MITK (v2021.02)
kislinsk committed rMITKf8ca3b7be4a9: Merge branch 'bugfix/T27902-ReplaceSlashesInInstallerName' into develop (authored by kislinsk).
Merge branch 'bugfix/T27902-ReplaceSlashesInInstallerName' into develop
Oct 23 2020, 1:33 PM
kislinsk added a comment to T27902: Handle slashes in installer names.

Pushed new branch bugfix/T27902-ReplaceSlashesInInstallerName.

Oct 23 2020, 1:33 PM · MITK (v2021.02)
kompan triaged T27909: Perfusion DataFit View: Incorrect calculation fo the maximum signal for the Two Step Linear Model as Normal priority.
Oct 23 2020, 1:18 PM · Next Milestone, MITK
kislinsk claimed T27902: Handle slashes in installer names.
Oct 23 2020, 1:12 PM · MITK (v2021.02)
kislinsk triaged T27908: [MITKDoc] Update Multilabel Segmentation documentation regarding label presets as Normal priority.
Oct 23 2020, 1:10 PM · Cleared, MITK (v2021.02)
kalali moved T27907: Extend "Checkliste Documentation" from Backlog to Documentation on the MITK (v2021.02) board.
Oct 23 2020, 12:22 PM · Auto-closed, MITK, Cleared
kalali triaged T27907: Extend "Checkliste Documentation" as Normal priority.
Oct 23 2020, 12:22 PM · Auto-closed, MITK, Cleared
kalali moved T27906: Extend "Checkliste Segmentierung – Utilities" from Backlog to Segmentation on the MITK (v2021.02) board.
Oct 23 2020, 12:16 PM · MITK (v2022.04), Cleared
kalali triaged T27906: Extend "Checkliste Segmentierung – Utilities" as High priority.
Oct 23 2020, 12:16 PM · MITK (v2022.04), Cleared
kompan added a comment to T8140: Reimplement volume annotations for segmentations.

This tasks came up again in the discussion of the clipping plane plugin, which allows for volume annotations for segmentations. Since we decided to remove the clipping plane plugin from the MITK release, this task was tagged with "Next Milestone" in order to restore the useful feature of volume annotations also outside the clipping plane plugin.

Oct 23 2020, 12:09 PM · MITK (v2024.12), Request for Discussion, Bugzilla
kislinsk added a comment to T27851: Unhide label presets.

Deleted branch bugfix/T27851-FixLabelSetPresetsAndMakeThemMoreAccessible.

Oct 23 2020, 11:49 AM · MITK (v2021.02)
kislinsk committed rMITK499751fb1eca: Fix loading and saving of LabelSet presets and make it more accessible (authored by kislinsk).
Fix loading and saving of LabelSet presets and make it more accessible
Oct 23 2020, 11:49 AM
kislinsk closed T27851: Unhide label presets as Resolved by committing rMITK499751fb1eca: Fix loading and saving of LabelSet presets and make it more accessible.
Oct 23 2020, 11:49 AM · MITK (v2021.02)
kislinsk edited projects for T27383: Update external toolkits, added: MITK (v2021.02); removed MITK.
Oct 23 2020, 11:46 AM · Noteworthy, MITK (v2021.02)
kislinsk renamed T8140: Reimplement volume annotations for segmentations from Implement volume annotation for ImageVtkMapper2D to Reimplement volume annotations for segmentations.
Oct 23 2020, 11:44 AM · MITK (v2024.12), Request for Discussion, Bugzilla
kislinsk removed a project from T8140: Reimplement volume annotations for segmentations: Request for Discussion.
Oct 23 2020, 11:43 AM · MITK (v2024.12), Request for Discussion, Bugzilla
kislinsk removed a project from T27383: Update external toolkits: Request for Discussion.
Oct 23 2020, 11:41 AM · Noteworthy, MITK (v2021.02)
kislinsk removed a project from T27340: [ModelFit] Request for Mac Workbench installer: Request for Discussion.
Oct 23 2020, 11:35 AM · Auto-closed, Restricted Project, MITK
kislinsk moved T27340: [ModelFit] Request for Mac Workbench installer from MITK Meeting to Backlog on the Request for Discussion board.
Oct 23 2020, 11:35 AM · Auto-closed, Restricted Project, MITK