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Apr 19 2024

floca closed T28797: [Segmentation[MultiLabel][Utilities] Using 4D data with dynamic segmentations results in 3D data, a subtask of T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation, as Resolved.
Apr 19 2024, 9:29 AM · MITK (v2022.10), Breaking Change
floca closed T29416: Segmentation utilities can only handle unsigned char and unsigned short, no other types as Resolved.

Resolved with T30390

Apr 19 2024, 9:18 AM · MITK (v2024.06), Missing Info
floca closed T28675: Boolean Operations in Segmentation utilities are slow as Resolved.

The tools are not useing InitializeByLabeledImage anymore. If speed is still a problem, please reopen.

Apr 19 2024, 9:12 AM · MITK (v2024.06), Request for Discussion
floca closed T29193: [SEG] Add a superpixel tool, a subtask of T29191: [SEG] New segmentation tool candidates, as Spite.
Apr 19 2024, 9:04 AM · MITK (v2024.12)
floca closed T29193: [SEG] Add a superpixel tool as Spite.

Reopen if the request really appears. Currently I guess things like SAM and medSAM will also do well.

Apr 19 2024, 9:04 AM · MITK (v2024.06)
floca added a comment to T29197: [Segmentation] Is the classificationsegmentation-plugin used / required?.

I would tend to remove it.

Apr 19 2024, 9:02 AM · MITK (v2024.06)
floca moved T29197: [Segmentation] Is the classificationsegmentation-plugin used / required? from Backlog to MITK Meeting on the Request for Discussion board.
Apr 19 2024, 9:02 AM · MITK (v2024.06)
floca closed T28264: [Segmentation Utilities] Various issues, a subtask of T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation, as Resolved.
Apr 19 2024, 9:01 AM · MITK (v2022.10), Breaking Change
floca closed T28264: [Segmentation Utilities] Various issues as Resolved.
Apr 19 2024, 9:01 AM · MITK (v2024.06), Cleared
floca moved T30395: [SEG] Utilities - rework/fix mask operations from Backlog to Cycle on the MITK (v2024.06) board.
Apr 19 2024, 8:57 AM · MITK (v2024.06)
floca triaged T30395: [SEG] Utilities - rework/fix mask operations as Normal priority.
Apr 19 2024, 8:52 AM · MITK (v2024.06)
floca committed rMITKd5ee209ef70f: T30390 Refactor_multi_label_bool_ops (authored by floca).
T30390 Refactor_multi_label_bool_ops
Apr 19 2024, 8:49 AM
floca committed rMITKc3984eb2bd89: fixed review remarks (authored by floca).
fixed review remarks
Apr 19 2024, 8:49 AM
floca committed rMITKd229ff61b06e: Improved visual label selection feedback in QmitkBooleanOperationWidget (authored by floca).
Improved visual label selection feedback in QmitkBooleanOperationWidget
Apr 19 2024, 8:49 AM
floca committed rMITK6e43ad98fd53: fixed gcc errors (authored by floca).
fixed gcc errors
Apr 19 2024, 8:49 AM
floca committed rMITK0841f16dd413: Reworked Boolean widget (authored by floca).
Reworked Boolean widget
Apr 19 2024, 8:49 AM
floca closed T30390: [SEG] Utilities - rework/fix boolean operations as Resolved by committing rMITK0841f16dd413: Reworked Boolean widget.
Apr 19 2024, 8:49 AM · MITK (v2024.06)
floca closed T30390: [SEG] Utilities - rework/fix boolean operations, a subtask of T28176: [Segmentation] Inspection of module and plugin, as Resolved.
Apr 19 2024, 8:49 AM · MITK (v2024.12)
floca committed rMITK84a0302773f3: Fixed error in selection docu example (authored by floca).
Fixed error in selection docu example
Apr 19 2024, 8:49 AM
floca committed rMITK6d2828c2ed41: BREAKING!!! (authored by floca).
BREAKING!!!
Apr 19 2024, 8:49 AM

Apr 18 2024

floca moved T30387: [SEG] More visual feedback by supporting highlighted labels in render window. from Backlog to Cycle on the MITK (v2024.06) board.
Apr 18 2024, 4:41 PM · MITK (v2024.06)
floca claimed T30387: [SEG] More visual feedback by supporting highlighted labels in render window..
Apr 18 2024, 4:40 PM · MITK (v2024.06)
floca moved T30255: Allow render window utility widgets on all sides from Backlog to Cycle on the MITK (v2024.06) board.
Apr 18 2024, 4:40 PM · MITK (v2024.12), Pull Request
floca moved T29076: [Segmentation] Pressing DEL should delete a label from Backlog to Cycle on the MITK (v2024.06) board.
Apr 18 2024, 4:40 PM · MITK (v2024.06), Checklist
floca moved T27354: Make conversion functions for different DataNode lists/vector types publicly available from Backlog to Cycle on the MITK (v2024.06) board.
Apr 18 2024, 4:39 PM · MITK (v2024.12), Restricted Project
floca moved T30247: MONAILabel: Improve doxygen docstrings from Backlog to Cycle on the MITK (v2024.06) board.
Apr 18 2024, 4:39 PM · MITK (v2024.12)
floca moved T30283: Make MITK Workbench more customizable for end-users from Backlog to Cycle on the MITK (v2024.06) board.
Apr 18 2024, 4:39 PM · MITK (v2024.12)
floca moved T30391: [Segmentation] Python 3.12 support for installable AI tools from Backlog to Cycle on the MITK (v2024.06) board.
Apr 18 2024, 4:39 PM · MITK (v2024.06)
floca moved T30390: [SEG] Utilities - rework/fix boolean operations from Backlog to Cycle on the MITK (v2024.06) board.
Apr 18 2024, 4:39 PM · MITK (v2024.06)
floca placed T27554: Handling of 2D and 2D+t sonographic (US) images up for grabs.
Apr 18 2024, 4:38 PM · Restricted Project, MITK
floca closed T28525: Design refactoring of LabelSetImage and associated classes, a subtask of T28524: Refactor LabelSetImage and associated classes., as Resolved.
Apr 18 2024, 4:37 PM · Next Milestone
floca closed T28525: Design refactoring of LabelSetImage and associated classes, a subtask of T28145: SetRegionTool does not work as expected (flood fill like) with concentric structures., as Resolved.
Apr 18 2024, 4:37 PM · MITK (v2022.10)
floca closed T28525: Design refactoring of LabelSetImage and associated classes as Resolved.
Apr 18 2024, 4:37 PM · Next Milestone
floca closed T29390: How to ease the handling of external generated segmentations as Resolved.
Apr 18 2024, 4:36 PM · MITK (v2024.06)
floca closed T28500: Multilabel Segmentation Utilities do not work for multilabel segmentations, a subtask of T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation, as Resolved.
Apr 18 2024, 4:35 PM · MITK (v2022.10), Breaking Change
floca closed T28500: Multilabel Segmentation Utilities do not work for multilabel segmentations as Resolved.
Apr 18 2024, 4:35 PM · MITK (v2024.06), Missing Info

Apr 15 2024

floca added a revision to T30390: [SEG] Utilities - rework/fix boolean operations: Unknown Object (Differential Revision).
Apr 15 2024, 6:53 PM · MITK (v2024.06)
floca committed rMITK3b10b122973e: T28796 Refactor_multi_label_morph_ops (authored by floca).
T28796 Refactor_multi_label_morph_ops
Apr 15 2024, 6:41 PM
floca committed rMITK6031a526b4e5: Fixed QmitkMultiLabelInspector update error of (Lock and Visibility) (authored by floca).
Fixed QmitkMultiLabelInspector update error of (Lock and Visibility)
Apr 15 2024, 6:41 PM
floca committed rMITK55ddf3b1a7ed: Fixed review comments (authored by floca).
Fixed review comments
Apr 15 2024, 6:41 PM
floca committed rMITKfd5a4a293f58: fixed review remarks (authored by floca).
fixed review remarks
Apr 15 2024, 6:41 PM
floca closed T28796: [Segmentation][Utilities] Morphological Operations behave unexpectedly, a subtask of T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation, as Resolved.
Apr 15 2024, 6:40 PM · MITK (v2022.10), Breaking Change
floca closed T28796: [Segmentation][Utilities] Morphological Operations behave unexpectedly as Resolved by committing rMITK6b88efaafec0: Reworked morphological operation widget..
Apr 15 2024, 6:40 PM · MITK (v2024.06), Checklist
floca committed rMITKfddd89627124: Extracted CreateLabelMask out of LabelSetImage and moved to… (authored by floca).
Extracted CreateLabelMask out of LabelSetImage and moved to…
Apr 15 2024, 6:40 PM
floca committed rMITK6b88efaafec0: Reworked morphological operation widget. (authored by floca).
Reworked morphological operation widget.
Apr 15 2024, 6:40 PM
floca committed rMITK2863ec9a46ff: Fixed gcc errors (authored by floca).
Fixed gcc errors
Apr 15 2024, 6:40 PM
floca committed rMITKaef6cdcd9d57: Added LabelSetImage::AddLabelWithContent (authored by floca).
Added LabelSetImage::AddLabelWithContent
Apr 15 2024, 6:40 PM
floca committed rMITKc454448ad60c: Improved QmitkMultiLabelInspector to expand sub trees automatically (authored by floca).
Improved QmitkMultiLabelInspector to expand sub trees automatically
Apr 15 2024, 6:40 PM
floca committed rMITKdca43b582b37: Extracted CreateLabelMask out of LabelSetImage and moved to… (authored by floca).
Extracted CreateLabelMask out of LabelSetImage and moved to…
Apr 15 2024, 6:40 PM
floca claimed T30392: [Segmentation] Totalsegmentator & Otsu is buggy.

ok. thanks for investigating. I will have a look.

Apr 15 2024, 10:29 AM · MITK (v2024.06)

Apr 11 2024

floca added a revision to T28796: [Segmentation][Utilities] Morphological Operations behave unexpectedly: Unknown Object (Differential Revision).
Apr 11 2024, 4:51 PM · MITK (v2024.06), Checklist
floca committed rMITK08d6ef409688: Fixed review remarks (authored by floca).
Fixed review remarks
Apr 11 2024, 9:37 AM
floca committed rMITK7c1b545dfcba: Merge branch 'feature/T29390-Improve_conversion_for_multilabel' of ssh… (authored by floca).
Merge branch 'feature/T29390-Improve_conversion_for_multilabel' of ssh…
Apr 11 2024, 9:37 AM
floca committed rMITKccb469becb9f: Merge branch 'feature/T29390-Improve_conversion_for_multilabel' into develop (authored by floca).
Merge branch 'feature/T29390-Improve_conversion_for_multilabel' into develop
Apr 11 2024, 9:37 AM
floca added a comment to T29390: How to ease the handling of external generated segmentations.

Pushed new branch to rMITK MITK: feature/T29390-Improve_conversion_for_multilabel.

Apr 11 2024, 8:35 AM · MITK (v2024.06)

Apr 10 2024

floca added a revision to T28796: [Segmentation][Utilities] Morphological Operations behave unexpectedly: Unknown Object (Differential Revision).
Apr 10 2024, 3:14 PM · MITK (v2024.06), Checklist
floca committed rMITK7261d84c48c0: T29390 Improve_conversion_for_multilabel (authored by floca).
T29390 Improve_conversion_for_multilabel
Apr 10 2024, 3:11 PM
floca committed rMITK1a4364ca67ba: Fixed review remarks (authored by floca).
Fixed review remarks
Apr 10 2024, 3:11 PM
floca committed rMITKabec925e75d2: added busy cursor to conversion and extraction widget. (authored by floca).
added busy cursor to conversion and extraction widget.
Apr 10 2024, 3:11 PM
floca committed rMITK44f534738035: Fixed gcc compile errors (authored by floca).
Fixed gcc compile errors
Apr 10 2024, 3:11 PM
floca committed rMITKf71847c0791f: BREAKING (authored by floca).
BREAKING
Apr 10 2024, 3:11 PM
floca committed rMITK3c7e04a018d7: Fix/imporve context menu for multi label selections (authored by floca).
Fix/imporve context menu for multi label selections
Apr 10 2024, 3:11 PM
floca committed rMITKf8332240e469: Fixed lookup table update error in visibility functions (authored by floca).
Fixed lookup table update error in visibility functions
Apr 10 2024, 3:11 PM
floca committed rMITK73d1441527bb: Updated documentation (authored by floca).
Updated documentation
Apr 10 2024, 3:11 PM
floca committed rMITK0ac6451a68f1: Introduce GetGroupImageWorkarround to avoid cloning (authored by floca).
Introduce GetGroupImageWorkarround to avoid cloning
Apr 10 2024, 3:11 PM
floca committed rMITKd0c29dc6e134: Corrected update of selector check function when switching modes. (authored by floca).
Corrected update of selector check function when switching modes.
Apr 10 2024, 3:10 PM
floca committed rMITKf2394ef77dca: Fixed that QmitkConvertToMultiLabelSegmentions can also deal with (authored by floca).
Fixed that QmitkConvertToMultiLabelSegmentions can also deal with
Apr 10 2024, 3:10 PM
floca committed rMITKdc103bd5e3df: Fixed error in TransferLabelContent functions when (authored by floca).
Fixed error in TransferLabelContent functions when
Apr 10 2024, 3:10 PM
floca committed rMITK174e82c4c81b: Fixed output pixel type of mitk::PadImageFilter (authored by floca).
Fixed output pixel type of mitk::PadImageFilter
Apr 10 2024, 3:10 PM
floca committed rMITK3997ff5f05a7: Added extraction widget to utilities (authored by floca).
Added extraction widget to utilities
Apr 10 2024, 3:10 PM
floca committed rMITK709284e9e63e: Added CreateLabelClassMap (authored by floca).
Added CreateLabelClassMap
Apr 10 2024, 3:10 PM
floca committed rMITK3f12f8d6e6cc: Extracted CreateLabelMask out of LabelSetImage and moved to… (authored by floca).
Extracted CreateLabelMask out of LabelSetImage and moved to…
Apr 10 2024, 3:10 PM
floca committed rMITK5e6b04d51e8a: Refactored redundant code parts (authored by floca).
Refactored redundant code parts
Apr 10 2024, 3:10 PM
floca committed rMITK678cb8260dc2: Added conversion helper needed for conversion widget. (authored by floca).
Added conversion helper needed for conversion widget.
Apr 10 2024, 3:10 PM
floca committed rMITK5929b3acc794: Add conversion widget to seg utilities. Remove old conversion widgets from ui. (authored by floca).
Add conversion widget to seg utilities. Remove old conversion widgets from ui.
Apr 10 2024, 3:10 PM
floca committed rMITKf24bf62e1d49: Added ConvertToMultiLabelSegmentation widget (authored by floca).
Added ConvertToMultiLabelSegmentation widget
Apr 10 2024, 3:10 PM
floca committed rMITK2e06940e99b1: Added precondition checks to LabelSetImage::AddLayer (authored by floca).
Added precondition checks to LabelSetImage::AddLayer
Apr 10 2024, 3:10 PM
floca committed rMITKcfafe22b2e42: Introduces QmitkMultiNodeSelectionWidget::CurrentSelectionViolatesCheckFunction… (authored by floca).
Introduces QmitkMultiNodeSelectionWidget::CurrentSelectionViolatesCheckFunction…
Apr 10 2024, 3:10 PM
floca committed rMITKcc2c027aca3b: Fixed incorrect hint message. (authored by floca).
Fixed incorrect hint message.
Apr 10 2024, 3:10 PM
floca committed rMITKe7aa0eb234c6: Exracted default node predicates for segmentation and reference image (authored by floca).
Exracted default node predicates for segmentation and reference image
Apr 10 2024, 3:10 PM
floca committed rMITK13c7684700b1: used c++14 short version for std::remove_const<>::type (review comment) (authored by floca).
used c++14 short version for std::remove_const<>::type (review comment)
Apr 10 2024, 3:10 PM
floca committed rMITK22e2aa24ba88: fixed typo (authored by floca).
fixed typo
Apr 10 2024, 3:09 PM

Apr 9 2024

floca added a comment to T30391: [Segmentation] Python 3.12 support for installable AI tools.

How important/much work is that support? Might be things that are more pressing then that? Or?

Apr 9 2024, 6:45 AM · MITK (v2024.06)

Apr 6 2024

floca triaged T30390: [SEG] Utilities - rework/fix boolean operations as High priority.
Apr 6 2024, 11:26 AM · MITK (v2024.06)

Apr 3 2024

floca moved T30353: [TotalSeg] Add confirmation dialog before exiting the tool from Backlog to Cycle on the MITK (v2024.06) board.
Apr 3 2024, 11:19 AM · MITK (v2024.06)
floca edited projects for T29526: [Segmentation] Workbench crashes when closing render window part with active tool, added: Missing Info; removed Request for Discussion.

does it still happen?

Apr 3 2024, 11:19 AM · MITK (v2024.06)
floca claimed T28796: [Segmentation][Utilities] Morphological Operations behave unexpectedly.
Apr 3 2024, 9:56 AM · MITK (v2024.06), Checklist

Apr 2 2024

floca raised the priority of T29526: [Segmentation] Workbench crashes when closing render window part with active tool from Normal to Unbreak Now!.

Discussion: How important is that?

Apr 2 2024, 7:12 PM · MITK (v2024.06)
floca closed T29369: [Segmentation Utilities] Handle / select different labels independently as Resolved.

Will be resolved/obsolete with current utilitie rework-

Apr 2 2024, 7:10 PM · MITK (v2024.06)
floca claimed T28500: Multilabel Segmentation Utilities do not work for multilabel segmentations.
Apr 2 2024, 7:06 PM · MITK (v2024.06), Missing Info
floca closed T27913: [Segmentation] Warnings in utilities view are inconsistent as Resolved.

Will be resolved/obsolete with current utilitie rework-

Apr 2 2024, 7:04 PM · MITK (v2024.06)
floca closed T27913: [Segmentation] Warnings in utilities view are inconsistent, a subtask of T28936: [Segmentation] Remove utilities redundancy with MultiLabelSegmentation, as Resolved.
Apr 2 2024, 7:04 PM · MITK (v2022.10), Breaking Change
floca added a comment to T27810: [Multilabel Segmentation] Inconsistencies and unclear functionality in operations of Utilities view.

Will be resolved/obsolete with current utilitie rework-

Apr 2 2024, 7:04 PM · MITK (v2022.10), Cleared, Restricted Project
floca claimed T28798: [Segmentation][MultiLabel][Utilities] UI is inconsistent / unstable.
Apr 2 2024, 7:01 PM · MITK (v2024.06), Checklist
floca claimed T28134: [Multilabel Segmentation] No warning triggered when using different mask geometries / dimensions in Utilities View.
Apr 2 2024, 7:01 PM · MITK (v2022.10), Cleared
floca moved T30208: [SEG] Add support to read/write stack of label images from/to a mitk label image from Segmentation to Cycle on the MITK (v2024.06) board.
Apr 2 2024, 6:59 PM · MITK (v2024.12)

Mar 29 2024

floca triaged T30388: [EUCAIM] Provide MITK as interactive tool in EUCAIM as Normal priority.
Mar 29 2024, 10:38 AM · Kaapana (internal), MITK

Mar 28 2024

floca triaged T30387: [SEG] More visual feedback by supporting highlighted labels in render window. as Normal priority.
Mar 28 2024, 11:48 AM · MITK (v2024.06)
floca triaged T30386: VectorProperties are not getting modified by SetValue as Low priority.
Mar 28 2024, 11:43 AM · Request for Discussion, MITK

Mar 19 2024

floca claimed T29390: How to ease the handling of external generated segmentations.
Mar 19 2024, 9:53 AM · MITK (v2024.06)
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