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Jun 3 2022

floca closed T29185: [Seg] Refactor AutoSegTools and deprecate AutoMLSegWithPreviewTool class as Resolved.
Jun 3 2022, 12:23 PM · Breaking Change, MITK (v2022.10)
floca committed rMITK9543f93caadb: T29185 Refactor AutoSegmentationTool classes (authored by floca).
T29185 Refactor AutoSegmentationTool classes
Jun 3 2022, 12:22 PM
floca committed rMITKfe3e2ae908a3: Fixed review commments (authored by floca).
Fixed review commments
Jun 3 2022, 12:22 PM
floca committed rMITKaaa3d384878c: fixed gcc compile errors (authored by floca).
fixed gcc compile errors
Jun 3 2022, 12:22 PM
floca committed rMITK79e4b0b81cc4: BREAKING: Renamed several tool classes (authored by floca).
BREAKING: Renamed several tool classes
Jun 3 2022, 12:22 PM
floca committed rMITK5add0c5486cf: BREAKING: Removed AutoMLSegmentationWithPreviewTool. (authored by floca).
BREAKING: Removed AutoMLSegmentationWithPreviewTool.
Jun 3 2022, 12:22 PM
floca closed T28866: [Segmentation] Redundant label "recomputation" for Otsu/Watershed (& nnUNet) when any of the Preview-generated labels are selected to Confirm as Resolved by committing rMITK5add0c5486cf: BREAKING: Removed AutoMLSegmentationWithPreviewTool..
Jun 3 2022, 12:22 PM · MITK (v2022.10), Request for Discussion
floca committed rMITK7ed8a5d64e8c: BREAKING: Added support of multiple labels to AutoSegmentationWithPreviewTool (authored by floca).
BREAKING: Added support of multiple labels to AutoSegmentationWithPreviewTool
Jun 3 2022, 12:22 PM
floca committed rMITKe496dde90787: Fixed reinitializing of LabelSetImage (authored by floca).
Fixed reinitializing of LabelSetImage
Jun 3 2022, 12:22 PM
floca committed rMITK7313be2dbf04: Merged class AutoSegmentationTool with AutoSegmentationWithPreviewTool (authored by floca).
Merged class AutoSegmentationTool with AutoSegmentationWithPreviewTool
Jun 3 2022, 12:22 PM
floca closed T29183: [SEG] Removal of "create as new segmentation" as Resolved by committing rMITK7313be2dbf04: Merged class AutoSegmentationTool with AutoSegmentationWithPreviewTool.
Jun 3 2022, 12:22 PM · MITK
s434n claimed T28297: Add Stitching MiniApp to installer.
Jun 3 2022, 12:12 PM · MITK (v2022.10), Restricted Project, Cleared
kalali triaged T29203: [Multi widget] Make classes work with the new render window names as Normal priority.
Jun 3 2022, 10:20 AM · MITK (v2022.10)
kalali added a revision to T26545: [Multi widget] Make classes work with QmitkAbstractMultiWidget(Editor): Unknown Object (Differential Revision).
Jun 3 2022, 10:19 AM · MITK (v2022.10)
kalali closed T26547: Clarify difference between QmitkPointListViewWidget and QmitkPointListView as Resolved.
Jun 3 2022, 10:18 AM · MITK (v2022.10)
kalali closed T26547: Clarify difference between QmitkPointListViewWidget and QmitkPointListView, a subtask of T26545: [Multi widget] Make classes work with QmitkAbstractMultiWidget(Editor), as Resolved.
Jun 3 2022, 10:18 AM · MITK (v2022.10)
kalali committed rMITKbefba8efc6a2: Remove QmitkPointListViewWidget (authored by kalali).
Remove QmitkPointListViewWidget
Jun 3 2022, 10:17 AM
kalali committed rMITK83734595cc52: Remove QmitkPointListViewWidget (authored by kalali).
Remove QmitkPointListViewWidget
Jun 3 2022, 10:17 AM
kalali committed rMITK846b64de1f19: Clean includes (authored by kalali).
Clean includes
Jun 3 2022, 10:17 AM
kalali committed rMITK01255621f6d2: Remove QmitkPointListViewWidget from class (authored by kalali).
Remove QmitkPointListViewWidget from class
Jun 3 2022, 10:17 AM
kalali committed rMITKf99cca002ee2: Remove unnecessary includes and forward declarations (authored by kalali).
Remove unnecessary includes and forward declarations
Jun 3 2022, 10:17 AM
kalali updated the task description for T26545: [Multi widget] Make classes work with QmitkAbstractMultiWidget(Editor).
Jun 3 2022, 10:14 AM · MITK (v2022.10)
kalali updated the task description for T26545: [Multi widget] Make classes work with QmitkAbstractMultiWidget(Editor).
Jun 3 2022, 9:04 AM · MITK (v2022.10)
kalali added a parent task for T29200: Completely remove QmitkFunctionality: T26545: [Multi widget] Make classes work with QmitkAbstractMultiWidget(Editor).
Jun 3 2022, 9:04 AM · MITK (v2022.10), Breaking Change
kalali added a subtask for T26545: [Multi widget] Make classes work with QmitkAbstractMultiWidget(Editor): T29200: Completely remove QmitkFunctionality.
Jun 3 2022, 9:04 AM · MITK (v2022.10)
a178n triaged T29202: Update doku for pretrained model download as Normal priority.
Jun 3 2022, 8:56 AM · MITK (v2022.10)
a178n triaged T29201: Update checklist for pretrained model download as Normal priority.
Jun 3 2022, 8:55 AM · MITK (v2022.10)
kalali triaged T29200: Completely remove QmitkFunctionality as Normal priority.
Jun 3 2022, 8:54 AM · MITK (v2022.10), Breaking Change
a178n triaged T29199: Move model download to a different thread. as Normal priority.
Jun 3 2022, 8:53 AM · MITK (v2022.10)
a178n added a comment to T29187: Add GUI elements to parse and show available models.

However, the implementation showed that it could take quite a long to download, depending on the model size. Hence, this should happen in a different thread.

Jun 3 2022, 8:51 AM · MITK (v2022.10)
a178n added a comment to T29187: Add GUI elements to parse and show available models.

A new combo box and button were added in the "Advanced" section. This combo box listed all available models for download, reading the JSON file.
The download button goes ahead & downloads the model and keeps it in the results folder location, in a valid way. No extra effort is required from the user.

Jun 3 2022, 8:49 AM · MITK (v2022.10)

Jun 2 2022

amiiney updated the task description for T29166: GSP: EndoCV detection challenge.
Jun 2 2022, 9:30 PM · Restricted Project
kislinsk closed T29189: Software crashes when launching python console as Wontfix.

Thank you for the report. The Python plugin is labeled as experimental and is not used by us anymore since quite some time now. We don't recommend to use it anymore.

Jun 2 2022, 8:59 PM · MITK
kalali updated the task description for T26545: [Multi widget] Make classes work with QmitkAbstractMultiWidget(Editor).
Jun 2 2022, 6:06 PM · MITK (v2022.10)
kalali added a revision to T26547: Clarify difference between QmitkPointListViewWidget and QmitkPointListView: Unknown Object (Differential Revision).
Jun 2 2022, 6:06 PM · MITK (v2022.10)
kalali added a comment to T29197: [Segmentation] Is the classificationsegmentation-plugin used / required?.

I tried clicking different buttons and crashes happen regularly.

Jun 2 2022, 5:58 PM · MITK (v2024.06)
kalali moved T29197: [Segmentation] Is the classificationsegmentation-plugin used / required? from Backlog to Segmentation on the MITK (v2022.10) board.
Jun 2 2022, 5:52 PM · MITK (v2024.06)
kalali triaged T29197: [Segmentation] Is the classificationsegmentation-plugin used / required? as Normal priority.
Jun 2 2022, 5:52 PM · MITK (v2024.06)
kislinsk added a comment to T29195: Fix FlowBench argument parsing and icon resource access.

Deleted branch from rMITK MITK: bugfix/T29195-FixFlowBenchArgParsingAndIconLoading.

Jun 2 2022, 4:00 PM · MITK
kislinsk committed rMITK5936329a056b: Replace manual argument parsing with app config access (authored by kislinsk).
Replace manual argument parsing with app config access
Jun 2 2022, 3:59 PM
kislinsk committed rMITK97d21e25491f: Fix dependencies to have access to necessary resources and icons (authored by kislinsk).
Fix dependencies to have access to necessary resources and icons
Jun 2 2022, 3:59 PM
kislinsk committed rMITKa3f5676ce09e: Remove unused code path (authored by kislinsk).
Remove unused code path
Jun 2 2022, 3:59 PM
kislinsk committed rMITKc6183651ff3c: Fix FlowBench argument parsing and icon resource access (authored by kislinsk).
Fix FlowBench argument parsing and icon resource access
Jun 2 2022, 3:59 PM
kislinsk closed T29195: Fix FlowBench argument parsing and icon resource access as Resolved by committing rMITKc6183651ff3c: Fix FlowBench argument parsing and icon resource access.
Jun 2 2022, 3:59 PM · MITK
kalali claimed T26547: Clarify difference between QmitkPointListViewWidget and QmitkPointListView.
Jun 2 2022, 3:20 PM · MITK (v2022.10)
kalali updated the task description for T26547: Clarify difference between QmitkPointListViewWidget and QmitkPointListView.
Jun 2 2022, 3:19 PM · MITK (v2022.10)
floca added a comment to T25725: "Show in" action is currently not implemented.

@floca Did you test the differential in the Workbench? Actually I was just implementing this feature witch was there for many years but never functioning. It was never of any use since we only had a single rendering display. What I realized, though: the use is barely existing, since you can only "send" a node to a render display / multi widget. But the StdMultiWidget displays the nodes anyway and the mxnMultiWidget should be controllered differently, right (since you only send the node to the whole multi widget, not to a single render window)?
So I can land the changes but I'm also fine with removing the feature entirely, eventually.

Jun 2 2022, 3:13 PM · MITK (v2022.10)
kislinsk added a revision to T29195: Fix FlowBench argument parsing and icon resource access: Unknown Object (Differential Revision).
Jun 2 2022, 2:19 PM · MITK
kislinsk added a comment to T29195: Fix FlowBench argument parsing and icon resource access.

Pushed new branch to rMITK MITK: bugfix/T29195-FixFlowBenchArgParsingAndIconLoading.

Jun 2 2022, 2:17 PM · MITK
kislinsk triaged T29195: Fix FlowBench argument parsing and icon resource access as Normal priority.
Jun 2 2022, 2:14 PM · MITK
a178n added a comment to T29187: Add GUI elements to parse and show available models.

Pushed new branch to rMITK MITK: feature/T29187-nnunet-show-download-models.

Jun 2 2022, 2:14 PM · MITK (v2022.10)
kalali reopened T26547: Clarify difference between QmitkPointListViewWidget and QmitkPointListView, a subtask of T26545: [Multi widget] Make classes work with QmitkAbstractMultiWidget(Editor), as Open.
Jun 2 2022, 1:04 PM · MITK (v2022.10)
kalali reopened T26547: Clarify difference between QmitkPointListViewWidget and QmitkPointListView as "Open".
Jun 2 2022, 1:04 PM · MITK (v2022.10)
kalali updated the task description for T26545: [Multi widget] Make classes work with QmitkAbstractMultiWidget(Editor).
Jun 2 2022, 1:04 PM · MITK (v2022.10)
kalali added a parent task for T26547: Clarify difference between QmitkPointListViewWidget and QmitkPointListView: T26545: [Multi widget] Make classes work with QmitkAbstractMultiWidget(Editor).
Jun 2 2022, 1:04 PM · MITK (v2022.10)
kalali added a subtask for T26545: [Multi widget] Make classes work with QmitkAbstractMultiWidget(Editor): T26547: Clarify difference between QmitkPointListViewWidget and QmitkPointListView.
Jun 2 2022, 1:04 PM · MITK (v2022.10)
j806e triaged T29194: Adapt annotation based simulations for current SIMPA as Normal priority.
Jun 2 2022, 12:49 PM · Photoacoustics
kalali moved T26545: [Multi widget] Make classes work with QmitkAbstractMultiWidget(Editor) from Backlog to mxn MultiWidget on the MITK (v2022.10) board.
Jun 2 2022, 12:37 PM · MITK (v2022.10)
kalali edited projects for T26545: [Multi widget] Make classes work with QmitkAbstractMultiWidget(Editor), added: MITK (v2022.10); removed Restricted Project, MITK.
Jun 2 2022, 12:37 PM · MITK (v2022.10)
kalali added a subtask for T25595: [Multi widget] Make classes work with the new render window access: T26543: Enum for AXIAL, SAGITTAL, CORONAL 3D/ORIGINAL/NONE is provided at many different locations.
Jun 2 2022, 12:34 PM · MITK (v2024.06)
kalali added a parent task for T26543: Enum for AXIAL, SAGITTAL, CORONAL 3D/ORIGINAL/NONE is provided at many different locations: T25595: [Multi widget] Make classes work with the new render window access.
Jun 2 2022, 12:34 PM · Breaking Change, Noteworthy, MITK
kalali moved T26543: Enum for AXIAL, SAGITTAL, CORONAL 3D/ORIGINAL/NONE is provided at many different locations from Backlog to MITK Meeting on the Request for Discussion board.
Jun 2 2022, 12:26 PM · Breaking Change, Noteworthy, MITK
kalali reopened T26543: Enum for AXIAL, SAGITTAL, CORONAL 3D/ORIGINAL/NONE is provided at many different locations as "Open".
Jun 2 2022, 12:26 PM · Breaking Change, Noteworthy, MITK
kalali updated subscribers of T25725: "Show in" action is currently not implemented.

@floca Did you test the differential in the Workbench? Actually I was just implementing this feature witch was there for many years but never functioning. It was never of any use since we only had a single rendering display. What I realized, though: the use is barely existing, since you can only "send" a node to a render display / multi widget. But the StdMultiWidget displays the nodes anyway and the mxnMultiWidget should be controllered differently, right (since you only send the node to the whole multi widget, not to a single render window)?
So I can land the changes but I'm also fine with removing the feature entirely, eventually.

Jun 2 2022, 11:48 AM · MITK (v2022.10)
kalali closed T27197: [Selection concept] Data storage inspector icons shift in node selection dialog as Wontfix.

I realized that this only happens for the second, third ... tab icon. Even if you change the order / number of tabs (and e.g. have the "Rendering tree" icon as the first icon tab) the first tab icon does not move. So I guess this is a Qt-issue and I would not deem this important enough, since this is barely visible and nondisruptive.

Jun 2 2022, 11:32 AM · MITK
kislinsk added a comment to T29158: [Segmentation] Custom list for optional label names.

Deleted branch from rMITK MITK: feature/T29158-CustomLabelSuggestions.

Jun 2 2022, 11:27 AM · MITK (v2022.10)
kislinsk added a comment to T29158: [Segmentation] Custom list for optional label names.

Deleted branch from rMITK MITK: feature/T29158-OptionallyAskForLabelNamesAndColors.

Jun 2 2022, 11:27 AM · MITK (v2022.10)
kislinsk committed rMITKd3a08fcf3715: Follow one definition rule (authored by kislinsk).
Follow one definition rule
Jun 2 2022, 11:26 AM
kislinsk committed rMITK574b951f12cf: Add preference for default label naming (authored by kislinsk).
Add preference for default label naming
Jun 2 2022, 11:26 AM
kislinsk committed rMITKb9e617d137ba: Optionally intervene default label naming with prompt (authored by kislinsk).
Optionally intervene default label naming with prompt
Jun 2 2022, 11:26 AM
kislinsk committed rMITK76ee5489fa88: Add command-line argument for label suggestions (authored by kislinsk).
Add command-line argument for label suggestions
Jun 2 2022, 11:26 AM
kislinsk committed rMITK9e86b53e0ac7: Set standard label suggestions internally (authored by kislinsk).
Set standard label suggestions internally
Jun 2 2022, 11:26 AM
kislinsk committed rMITKad284e0386a5: Add preferences for custom label name and color suggestions (authored by kislinsk).
Add preferences for custom label name and color suggestions
Jun 2 2022, 11:26 AM
kislinsk committed rMITK45205c38c0e8: Modernize QmitkNewSegmentationDialog (authored by kislinsk).
Modernize QmitkNewSegmentationDialog
Jun 2 2022, 11:26 AM
kislinsk committed rMITK97516d76ae36: Also adapt label text in RenameLabel mode (authored by kislinsk).
Also adapt label text in RenameLabel mode
Jun 2 2022, 11:26 AM
kislinsk committed rMITK45ebb5c40086: Disable default label naming when label suggestions are enforced (authored by kislinsk).
Disable default label naming when label suggestions are enforced
Jun 2 2022, 11:26 AM
kislinsk committed rMITK5d1b8fa64660: Allow custom label name and color suggestions (authored by kislinsk).
Allow custom label name and color suggestions
Jun 2 2022, 11:26 AM
kislinsk committed rMITKd020f050d7bd: Fix newly introduced copy & paste error (authored by kislinsk).
Fix newly introduced copy & paste error
Jun 2 2022, 11:26 AM
kislinsk committed rMITK193befc69858: Optionally remove existing label names from label suggestions (authored by kislinsk).
Optionally remove existing label names from label suggestions
Jun 2 2022, 11:26 AM
kislinsk committed rMITK81e6846444e0: Add information about custom label suggestions to the user manual (authored by kislinsk).
Add information about custom label suggestions to the user manual
Jun 2 2022, 11:26 AM
kislinsk committed rMITK7366a123981d: Fix erroneous color value parsing (authored by kislinsk).
Fix erroneous color value parsing
Jun 2 2022, 11:26 AM
kislinsk committed rMITK1e329ab2dfb2: Rename variables (authored by kislinsk).
Rename variables
Jun 2 2022, 11:26 AM
kislinsk committed rMITK324954680f1c: Fix unused variable warning due to structured binding (authored by kislinsk).
Fix unused variable warning due to structured binding
Jun 2 2022, 11:26 AM
kislinsk committed rMITK5dd4ba85b7bc: Generalize description of label suggestions (authored by kislinsk).
Generalize description of label suggestions
Jun 2 2022, 11:26 AM
kislinsk closed T29158: [Segmentation] Custom list for optional label names as Resolved by committing rMITKa9242aa9966a: Allow custom label name and color suggestions.
Jun 2 2022, 11:26 AM · MITK (v2022.10)
kislinsk closed T29158: [Segmentation] Custom list for optional label names, a subtask of T29157: NCT ISSO Annotation Support with MITK Segmentation Flow, as Resolved.
Jun 2 2022, 11:26 AM · MITK (v2024.06)
kislinsk committed rMITKa9242aa9966a: Allow custom label name and color suggestions (authored by kislinsk).
Allow custom label name and color suggestions
Jun 2 2022, 11:26 AM
schellem added a comment to T29176: IMSY-Poster for "Arbeitsgruppeninspirationsmesse".

resolved :)

Jun 2 2022, 8:01 AM · Restricted Project

Jun 1 2022

floca updated the task description for T29160: [Segmentation] Worklist specification, data structure and io functions.
Jun 1 2022, 5:36 PM · MITK (v2022.10)
floca updated the task description for T29160: [Segmentation] Worklist specification, data structure and io functions.
Jun 1 2022, 5:34 PM · MITK (v2022.10)
floca updated subscribers of T29191: [SEG] New segmentation tool candidates.
Jun 1 2022, 5:23 PM · MITK (v2024.06)
floca added a parent task for T29193: [SEG] Add a superpixel tool: T29191: [SEG] New segmentation tool candidates.
Jun 1 2022, 5:20 PM · MITK (v2024.06)
floca added a subtask for T29191: [SEG] New segmentation tool candidates: T29193: [SEG] Add a superpixel tool.
Jun 1 2022, 5:20 PM · MITK (v2024.06)
floca triaged T29193: [SEG] Add a superpixel tool as Normal priority.
Jun 1 2022, 5:19 PM · MITK (v2024.06)
floca added a parent task for T29192: [SEG] MONAI Label support in MITK Workbench: T29191: [SEG] New segmentation tool candidates.
Jun 1 2022, 5:12 PM · MITK (v2024.06)
floca added a subtask for T29191: [SEG] New segmentation tool candidates: T29192: [SEG] MONAI Label support in MITK Workbench.
Jun 1 2022, 5:12 PM · MITK (v2024.06)
floca triaged T29192: [SEG] MONAI Label support in MITK Workbench as Normal priority.
Jun 1 2022, 5:12 PM · MITK (v2024.06)
floca added a parent task for T28406: [Segmentation] Examine Live-wire tool for different costfunctions/behavior: T29191: [SEG] New segmentation tool candidates.
Jun 1 2022, 5:06 PM · MITK
floca added a parent task for T28464: [Segmentation] New Add/Remove tool: T29191: [SEG] New segmentation tool candidates.
Jun 1 2022, 5:06 PM · MITK (v2022.10)
floca added subtasks for T29191: [SEG] New segmentation tool candidates: T28464: [Segmentation] New Add/Remove tool, T28406: [Segmentation] Examine Live-wire tool for different costfunctions/behavior, T28851: [SEG] Add ITK GrowCut as segmentation tool.
Jun 1 2022, 5:06 PM · MITK (v2024.06)