Deleted branch from rMITK MITK: feature/T29390-Improve_conversion_for_multilabel.
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Sep 16 2024
Sep 16 2024
kislinsk closed T29389: Python utility module, a subtask of T29390: How to ease the handling of external generated segmentations, as Resolved.
kislinsk closed T29648: SAM Python: Improve the wrapper to be used independently without MITK, a subtask of T29539: SAM Python wrapper for MITK, as Resolved.
Jun 25 2024
Jun 25 2024
kislinsk edited projects for T30430: [TotalSeg] Add check if python venv exists before installation, added: MITK (v2024.06); removed MITK (v2024.12).
Jun 19 2024
Jun 19 2024
Deleted branch from rMITK MITK: feature/T30469-SupportExperimentalFilesystem.
kislinsk added a comment to T30387: [SEG] More visual feedback by supporting highlighted labels in render window..
Deleted branch from rMITK MITK: feature/T30387-highlight_labels.
Deleted branch from rMITK MITK: feature/T30294-Remove_LabelSet_class.
Jun 18 2024
Jun 18 2024
Deleted branch from rMITK MITK: feature/T30300-totalseg-fastbox.
Deleted branch from rMITK MITK: feature/T30353-totalseg-update.
Deleted branch from rMITK MITK: bugfix/T30392-totalseg-nnunet-confirmbutton.
Deleted branch from rMITK MITK: feature/T30355-medsam-tool.
Deleted branch from rMITK MITK: feature/T30357-medsam-doku.
Deleted branch from rMITK MITK: feature/T30231-monailabel-doku.
Deleted branch from rMITK MITK: feature/T30426-doc-updates.
Deleted branch from rMITK MITK: feature/T30457-totalseg-mri.
Jun 17 2024
Jun 17 2024
Deleted branch from rMPT MITK-ProjectTemplate: release/T30472-v2024.06.
Deleted branch from rMITK MITK: release/T30472-v2024.06.
Jun 16 2024
Jun 16 2024
Pushed new branch to rMPT MITK-ProjectTemplate: release/T30472-v2024.06.
Pushed new branch to rMITK MITK: release/T30472-v2024.06.
kislinsk closed T30231: Monailabel User documentation, a subtask of T29192: [SEG] MONAI Label support in MITK Workbench, as Resolved.
kislinsk added a revision to T30467: [Segmentation Utilities] Update F1 help: Restricted Differential Revision.
Jun 14 2024
Jun 14 2024
Jun 13 2024
Jun 13 2024
kislinsk added a revision to T30469: Build MITK CoreCmdApps on CentOS 7: Restricted Differential Revision.
Pushed new branch to rMITK MITK: feature/T30469-SupportExperimentalFilesystem.
Jun 12 2024
Jun 12 2024
s434n added a revision to T30467: [Segmentation Utilities] Update F1 help: Restricted Differential Revision.
kislinsk closed T30465: [Segmentation] Create icon for "Extract from Segmentation" utility as Resolved.
kislinsk added a comment to T30465: [Segmentation] Create icon for "Extract from Segmentation" utility.
Deleted branch from rMITK MITK: bugfix/T30465-CreateExtractFromSegmentationIcon.
kislinsk added a comment to T30465: [Segmentation] Create icon for "Extract from Segmentation" utility.
Pushed new branch to rMITK MITK: bugfix/T30465-CreateExtractFromSegmentationIcon.
kislinsk triaged T30465: [Segmentation] Create icon for "Extract from Segmentation" utility as Normal priority.
Seems to be solved as it was not found again be our monkey testing.
Jun 11 2024
Jun 11 2024
floca closed T30286: Update to DCMQI 1.3.1 as Resolved by committing rMITK9b3159917130: Adapt to new DCMQI interface.
I applied the patch mention here and deployed the patched version of Boost to the MITK server.
Deleted branch from rMITK MITK: bugfix/T30464-PatchBoost_VS2022_v17.10.
Pushed new branch to rMITK MITK: bugfix/T30464-PatchBoost_VS2022_v17.10.
kislinsk triaged T30464: Boost binaries fail to build on latest Visual Studio 2022 as Unbreak Now! priority.
Isn't it resolved and merged?
Jun 7 2024
Jun 7 2024
Deleted branch from rMITK MITK: bugfix/T30463-FixHttpLibDeps.
Pushed new branch to rMITK MITK: bugfix/T30463-FixHttpLibDeps.
Jun 5 2024
Jun 5 2024
kislinsk closed T30458: [Segmentation] Increase paint tool default brush size from 1 to 10 as Resolved.
kislinsk added a comment to T30458: [Segmentation] Increase paint tool default brush size from 1 to 10.
Deleted branch from rMITK MITK: bugfix/T30458-IncreaseDefaultBrushSize.
kislinsk added a comment to T30458: [Segmentation] Increase paint tool default brush size from 1 to 10.
Pushed new branch to rMITK MITK: bugfix/T30458-IncreaseDefaultBrushSize.
kislinsk triaged T30458: [Segmentation] Increase paint tool default brush size from 1 to 10 as Low priority.
Jun 4 2024
Jun 4 2024
Pushed new branch to rMITK MITK: feature/T30457-totalseg-mri.
After meeting, it was decided to push for 2024.06 release
Deleted branch from rMITK MITK: bugfix/T30456-UpgradeITK.
- Windows Edition: Windows 11 Home
- MITK Blocked /Scanned: When starting the MitkWorkbench.bat file the Windows system does not let it run intially. A window appears "Windowps protects your PC- Microsoft Defender SmartScreen prevented an ungecognised app from starting- Running this app might put your PC at risk." Then the option "Run anyway" was selected.
- Installation location: in C drive ( Desktop)
- Exact terminal output: Command window with a large amount of text appears when the software runs; otherwise, only the first paragraph ("C:\Users\....\bin\MitkWokbench.exe") appears in the command screen.
What would be your estimate regaridng the effort? Lets talk about it tomorrow?
Jun 3 2024
Jun 3 2024
The new MR task feature is not just straightfwd pip version update change in MITK for installation.
The total_mr brings new 56 label name set.
There would be code updates to parse & apply it in mitkTotalSegmentator.cpp.
kislinsk added a revision to T30456: Upgrade ITK from v5.4 RC2 to v5.4.0: Restricted Differential Revision.
- Instead of depending on Eigen, depend on ITK|ITKEigen3.
- Prefix header paths with itkeigen/, e.g. itkeigen/Eigen/Dense instead of Eigen/Dense
ITK's Eigen interferes with our separate external dependency, so I will remove our own and change the dependencies to ITK's Eigen, which is just fine regarding its version.
Pushed new branch to rMITK MITK: bugfix/T30456-UpgradeITK.
I fixed MatchPoint with rMP6a425290639f: Merge branch 'T30456-FixWrongClassNameInITKMacro'.
May 28 2024
May 28 2024
Deleted branch from rMITK MITK: bugfix/T30453-FixBufferOverflow.
May 27 2024
May 27 2024
Pushed new branch to rMITK MITK: bugfix/T30453-FixBufferOverflow.
kislinsk added a revision to T30453: Fix (academic) buffer overflow in MorphologicalOperations: Restricted Differential Revision.
kislinsk triaged T30453: Fix (academic) buffer overflow in MorphologicalOperations as High priority.
kislinsk added a comment to T30452: Update valid MSVC version range for Visual Studio 2022 to include 194x.
Deleted branch from rMITK MITK: bugfix/T30452-MSVC-194x-Boost.
kislinsk added a comment to T30452: Update valid MSVC version range for Visual Studio 2022 to include 194x.
Pushed new branch to rMITK MITK: bugfix/T30452-MSVC-194x-Boost.
kislinsk triaged T30452: Update valid MSVC version range for Visual Studio 2022 to include 194x as High priority.
a178n closed T30423: [SEG] Segment Anything misleading GPU message for first time users as Resolved.
Words like Sorry and You're in luck are removed.
a178n added a revision to T30423: [SEG] Segment Anything misleading GPU message for first time users: Restricted Differential Revision.
May 24 2024
May 24 2024
s434n added a revision to T30423: [SEG] Segment Anything misleading GPU message for first time users: Restricted Differential Revision.
May 21 2024
May 21 2024
kislinsk edited projects for T30448: MITK snapshots/2024-05-02 Workbench not restarting, added: Missing Info, MITK (v2024.06); removed MITK.
As no such issue is already known to us there won't be any difference in the upcoming release. A little bit more information would be useful here. What version of Windows? Blocked/scanned by anti malware software/virus scanner? Where did they install MITK? User rights? What's the exact terminal output? What about the command-line apps?
May 16 2024
May 16 2024
kompan added a project to T30204: Improve visibility between help files for perfusion: Next Milestone.
kompan added a project to T29638: ModelFit Inspector crahes sometimes on data selection: Next Milestone.
This task is closed since the ModelFit/Perfusion views will be part of MITK v2024.06 and it is planned that they will be part of the official releases from MITK v2024.06 onwards.
kompan added a project to T30437: [Perfusion] Provide example start parameter image for checklists: Next Milestone.
kompan edited projects for T26288: MRI Perfusion view should only generate concentration images once, added: Next Milestone; removed Cleared.
kompan closed T27739: Inspection positions deletion in ModelFit not updated in data display. as Resolved.
May 15 2024
May 15 2024
kompan edited projects for T30428: DCE MR Perfusion DataFit View: Selected Mask widget can't find DICOM segmentation nodes, added: Next Milestone; removed Request for Discussion, Checklist.
kompan added a comment to T30428: DCE MR Perfusion DataFit View: Selected Mask widget can't find DICOM segmentation nodes.
In the MitkNodePredicateGeometry to precision is set to 1e-6. So this is at least one of the issues why the old masks are not found. It could be an option to relax the precision, but since the rotation matrix might have a large effect even for small inaccuracies, it needs to be thoroughly tested first how big the effect is if. e.g 1e-4 is accepted.
For now, the new segmentation masks are provided as test data instead of the old masks.