Page MenuHomePhabricator
Feed Advanced Search

Nov 23 2020

floca added a comment to T26164: DICOM Query/Retrieve doesn't work at least in Ubuntu release installers.

🤞

Nov 23 2020, 11:24 PM · Cleared, MITK (v2021.02)
kislinsk added a comment to T26164: DICOM Query/Retrieve doesn't work at least in Ubuntu release installers.

Let's see if the Nightly installers tomorrow morning are able to load Sarah's DICOM files. 🤞

Nov 23 2020, 11:03 PM · Cleared, MITK (v2021.02)
kislinsk added a comment to T26164: DICOM Query/Retrieve doesn't work at least in Ubuntu release installers.

Deleted branch bugfix/T26164-AlwaysUseDCMTKBuiltInDICOMDictionaries.

Nov 23 2020, 11:01 PM · Cleared, MITK (v2021.02)
kislinsk added a comment to T26164: DICOM Query/Retrieve doesn't work at least in Ubuntu release installers.

Pushed new branch bugfix/T26164-AlwaysUseDCMTKBuiltInDICOMDictionaries.

Nov 23 2020, 10:59 PM · Cleared, MITK (v2021.02)
kislinsk added a comment to T26164: DICOM Query/Retrieve doesn't work at least in Ubuntu release installers.

Everything you need to know about the DICOM dictionaries and how DCMTK is handling them is described here: https://github.com/InsightSoftwareConsortium/DCMTK/blob/master/dcmdata/docs/datadict.txt

Nov 23 2020, 10:55 PM · Cleared, MITK (v2021.02)
kislinsk added a comment to T26164: DICOM Query/Retrieve doesn't work at least in Ubuntu release installers.

Verified on macOS. I downloaded the dictionary and exported DCMDICTPATH. The MITK Workbench was able to load the DICOM files correctly afterwards. 🎉

Nov 23 2020, 10:40 PM · Cleared, MITK (v2021.02)
kislinsk raised the priority of T26164: DICOM Query/Retrieve doesn't work at least in Ubuntu release installers from High to Unbreak Now!.
Nov 23 2020, 11:57 AM · Cleared, MITK (v2021.02)

Nov 15 2020

kislinsk added a comment to T27608: [MITKDoc] Documentation Refurbish - Developer Manual.

Deleted branch bugfix/T27608-DocumentationRefurbish-DeveloperManual.

Nov 15 2020, 12:34 PM · MITK (v2024.06), Cleared

Nov 4 2020

kislinsk closed T27247: MITK_SHOW_CONSOLE_WINDOW is not honored in mitk_create_executable function as Resolved.
Nov 4 2020, 7:19 AM · Pull Request, Cleared, MITK (v2021.02)
kislinsk added a comment to T27247: MITK_SHOW_CONSOLE_WINDOW is not honored in mitk_create_executable function.

Deleted branch feature/T27247-ShowConsoleWindow.

Nov 4 2020, 7:19 AM · Pull Request, Cleared, MITK (v2021.02)
kislinsk added a comment to T27247: MITK_SHOW_CONSOLE_WINDOW is not honored in mitk_create_executable function.

Pushed new branch feature/T27247-ShowConsoleWindow.

Nov 4 2020, 7:18 AM · Pull Request, Cleared, MITK (v2021.02)
kislinsk claimed T27247: MITK_SHOW_CONSOLE_WINDOW is not honored in mitk_create_executable function.
Nov 4 2020, 7:02 AM · Pull Request, Cleared, MITK (v2021.02)

Oct 28 2020

kislinsk added a comment to T27908: [MITKDoc] Update Multilabel Segmentation documentation regarding label presets.

Deleted branch bugfix/T27908-UpdateMultilabelSegmentationDoc.

Oct 28 2020, 10:41 AM · Cleared, MITK (v2021.02)
kislinsk closed T27908: [MITKDoc] Update Multilabel Segmentation documentation regarding label presets as Resolved by committing rMITK7e02155bc8ba: Add section about label set presets to multilabel segmentation documentation.
Oct 28 2020, 10:40 AM · Cleared, MITK (v2021.02)
kislinsk added a comment to T27908: [MITKDoc] Update Multilabel Segmentation documentation regarding label presets.

Pushed new branch bugfix/T27908-UpdateMultilabelSegmentationDoc.

Oct 28 2020, 6:59 AM · Cleared, MITK (v2021.02)
kislinsk added a revision to T27908: [MITKDoc] Update Multilabel Segmentation documentation regarding label presets: Restricted Differential Revision.
Oct 28 2020, 6:52 AM · Cleared, MITK (v2021.02)

Oct 26 2020

kalali added a comment to T27906: Extend "Checkliste Segmentierung – Utilities".

I updated the document and added content to explicitly test

  • utilities / tools / operations on a 3D image
  • combination of 3D images with dynamic segmentation / surface
  • combination of 4D images with static segmentation / surface
  • combination of dynamic and static segmentation
Oct 26 2020, 2:14 PM · MITK (v2022.04), Cleared

Oct 23 2020

floca added a parent task for T26953: DICOM SEG - Cannot rewrite segmentations as DICOM SEG: T27178: MITK - DICOM Seg - loaded DCM SEG not associated with referenced DCM .
Oct 23 2020, 6:54 PM · MITK (v2024.06), Cleared
kislinsk triaged T27908: [MITKDoc] Update Multilabel Segmentation documentation regarding label presets as Normal priority.
Oct 23 2020, 1:10 PM · Cleared, MITK (v2021.02)
kalali moved T27907: Extend "Checkliste Documentation" from Backlog to Documentation on the MITK (v2021.02) board.
Oct 23 2020, 12:22 PM · Auto-closed, MITK, Cleared
kalali triaged T27907: Extend "Checkliste Documentation" as Normal priority.
Oct 23 2020, 12:22 PM · Auto-closed, MITK, Cleared
kalali moved T27906: Extend "Checkliste Segmentierung – Utilities" from Backlog to Segmentation on the MITK (v2021.02) board.
Oct 23 2020, 12:16 PM · MITK (v2022.04), Cleared
kalali triaged T27906: Extend "Checkliste Segmentierung – Utilities" as High priority.
Oct 23 2020, 12:16 PM · MITK (v2022.04), Cleared

Oct 19 2020

kislinsk added a subtask for T27196: Rewrite packaging of MITK: T27894: Linux nightly installer doesn't start on Fedora.
Oct 19 2020, 1:19 PM · MITK (v2024.06), Cleared
kislinsk added a subtask for T27196: Rewrite packaging of MITK: T26258: MITK and python only works with the specific python version the installer was created with.
Oct 19 2020, 1:16 PM · MITK (v2024.06), Cleared

Oct 15 2020

kalali added a comment to T27506: Extend checklists for segmentation view.

I'm all in for that. We already discussed that we will focus again on this task {T26754} and its subtasks. This also includes

Automatic GUI testing

and

move as much tests as possible to Unit-Tests

Oct 15 2020, 9:56 AM · MITK (v2022.04), Cleared

Oct 14 2020

floca added a comment to T27506: Extend checklists for segmentation view.

OK. But I tend/think more and more that we should strive for a unit test testbed that tests all that on the tool class level (either the respective base classes or the tools itself where it is easily possible (e.g. because the have no interaction (but even thous shouldn't be a show stopper).

Oct 14 2020, 8:21 PM · MITK (v2022.04), Cleared
kalali added a comment to T27506: Extend checklists for segmentation view.

The checklist don't say anything about multilabel segmentation. This should be addressed with a special focus on creating and combining multiple labels / layers.
I couldn't find any other checklist with a focus on the multilabel functionality.

Oct 14 2020, 3:42 PM · MITK (v2022.04), Cleared
kalali added a comment to T27873: Extend "Checkliste Segmentierung – Interpolation".

I updated the document and added content to explicitly tests

Oct 14 2020, 3:38 PM · MITK (v2022.04), Cleared
kislinsk edited projects for T27817: [Multilabel] Live Wire tool always assigns first label when being used with multiple labels, added: Cleared; removed Request for Discussion.
Oct 14 2020, 10:29 AM · Cleared, MITK (v2021.02)
kalali claimed T27873: Extend "Checkliste Segmentierung – Interpolation".
Oct 14 2020, 10:23 AM · MITK (v2022.04), Cleared

Oct 13 2020

kalali moved T27873: Extend "Checkliste Segmentierung – Interpolation" from Backlog to Segmentation on the MITK (v2021.02) board.
Oct 13 2020, 3:38 PM · MITK (v2022.04), Cleared
kalali triaged T27873: Extend "Checkliste Segmentierung – Interpolation" as High priority.
Oct 13 2020, 3:36 PM · MITK (v2022.04), Cleared
kalali added a comment to T27850: Extend "Checkliste Segmentierung – 3D Segmentierung".

Similar to T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung" I updated the document and added content to explicitly tests different image types / segmentation types.
Additionally I tried to make both checklists more consistent.

Oct 13 2020, 3:34 PM · MITK (v2022.04), Cleared
kalali triaged T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox as Normal priority.
Oct 13 2020, 2:41 PM · MITK (v2022.10), Cleared
kalali created T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox.
Oct 13 2020, 2:41 PM · MITK (v2022.10), Cleared

Oct 12 2020

kalali moved T27850: Extend "Checkliste Segmentierung – 3D Segmentierung" from Backlog to Segmentation on the MITK (v2021.02) board.
Oct 12 2020, 10:51 AM · MITK (v2022.04), Cleared
kalali triaged T27850: Extend "Checkliste Segmentierung – 3D Segmentierung" as High priority.
Oct 12 2020, 10:47 AM · MITK (v2022.04), Cleared

Oct 9 2020

floca added a parent task for T26953: DICOM SEG - Cannot rewrite segmentations as DICOM SEG: Restricted Maniphest Task.
Oct 9 2020, 1:22 PM · MITK (v2024.06), Cleared
kislinsk added subtasks for T27196: Rewrite packaging of MITK: T26451: DICOM plugin cannot parse DICOM directories in macOS installer, T27669: Dicom import issue with MITK binaries (package) and Ubuntu.
Oct 9 2020, 11:26 AM · MITK (v2024.06), Cleared
kislinsk added a subtask for T27196: Rewrite packaging of MITK: Restricted Maniphest Task.
Oct 9 2020, 11:24 AM · MITK (v2024.06), Cleared
kalali added a comment to T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

I looked again at the tests we have inside the checklist and I think it is still very long and many steps are redundant - because only the clicked tool-button changes and the underlying segmentation algorithm produces different results.
I think it is clearer and even better for testing a specific tool / algorithm, if we somehow separate the tests for different tools.
Also,

If necessary, I might need a helping hand because static/dynamic*single/double*2DTools/3DTools = many test cases

Oct 9 2020, 11:00 AM · MITK (v2022.04), Cleared
kalali updated the task description for T27737: Extend "Checkliste Segmentierung – Optionen".
Oct 9 2020, 9:16 AM · MITK (v2022.04), Cleared
kalali closed T27100: [MITKDoc] Revise DataManager Plugin Documentation as Resolved.
Oct 9 2020, 8:42 AM · Cleared, MITK (v2021.02)

Oct 6 2020

kalali changed Deadline from Oct 9 2020, 12:00 AM to Oct 9 2020, 9:00 AM on T27100: [MITKDoc] Revise DataManager Plugin Documentation.
Oct 6 2020, 11:06 AM · Cleared, MITK (v2021.02)
kalali set Deadline to Oct 9 2020, 12:00 AM on T27100: [MITKDoc] Revise DataManager Plugin Documentation.
Oct 6 2020, 11:05 AM · Cleared, MITK (v2021.02)

Oct 5 2020

kompan triaged T27814: Refactor ModelFit Generic Data Fitting view to use new selection concept as Normal priority.
Oct 5 2020, 10:48 AM · MITK (v2024.06), Cleared
kompan triaged T27813: Curve Description Parameters View progress bar 99% as Normal priority.
Oct 5 2020, 10:36 AM · MITK (v2023.12)

Oct 2 2020

kalali closed T24775: Refactor plugins to use the new node selection widgets as Resolved.

I removed T27060: [Segmentation] Rework InterpolationWidget to not depend on data manager view directly as subtask and now this can be closed!

Oct 2 2020, 12:58 PM · MITK, Restricted Project, Cleared
kalali updated the task description for T24775: Refactor plugins to use the new node selection widgets.
Oct 2 2020, 12:54 PM · MITK, Restricted Project, Cleared

Oct 1 2020

kalali merged T22330: 3D and 2D interpolation does not work in the multilabelsegmentation plugin into T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View.
Oct 1 2020, 3:02 PM · MITK (v2023.04), Restricted Project
kalali added a parent task for T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View: T27807: [MultiLabel Segmentation] Inspection of module and plugin.
Oct 1 2020, 2:51 PM · MITK (v2023.04), Restricted Project

Sep 29 2020

kalali raised the priority of T27100: [MITKDoc] Revise DataManager Plugin Documentation from Normal to Unbreak Now!.

I'm was able to land the differential. I simply merged the branch, after I updated D255 with it. Everything seems fine but I'm not sure if old changes of the documentation have also been re-added. Please check (hint could be the removed "The" in front of the documentation page names).

Sep 29 2020, 1:19 PM · Cleared, MITK (v2021.02)

Sep 28 2020

kalali closed T27094: [MITKDoc] Revise Segmentation Utilities Plugin Documentation as Resolved.
Sep 28 2020, 11:29 AM · Cleared, MITK (v2021.02)

Sep 25 2020

thomass closed T27772: Clean up ModelFitInspector in TOC of doxygen documentation as Resolved by committing rMITK1223fbcd0327: T27772 rename fit inspector views in manual overview.
Sep 25 2020, 11:22 AM · Cleared, MITK (v2021.02)
thomass added a revision to T27772: Clean up ModelFitInspector in TOC of doxygen documentation: Restricted Differential Revision.
Sep 25 2020, 11:20 AM · Cleared, MITK (v2021.02)
kompan closed T27115: [MITKDoc] Revise Matchpoint Frame Correction Plugin Documentation as Resolved.
Sep 25 2020, 10:06 AM · Cleared, MITK (v2021.02)
kompan lowered the priority of T27608: [MITKDoc] Documentation Refurbish - Developer Manual from Normal to Low.
Sep 25 2020, 9:53 AM · MITK (v2024.06), Cleared

Sep 24 2020

kompan closed T27116: [MITKDoc] Revise Matchpoint Algorithm Browser Plugin Documentation as Resolved.
Sep 24 2020, 10:27 AM · Cleared, MITK (v2021.02)
kompan triaged T27772: Clean up ModelFitInspector in TOC of doxygen documentation as Normal priority.
Sep 24 2020, 9:37 AM · Cleared, MITK (v2021.02)
floca closed T27111: [MITKDoc] Revise Matchpoint Registration Visualizer Plugin Documentation as Resolved by committing rMITKfaf315c77212: Revise documentation of MatchPoint Visualizer.
Sep 24 2020, 9:06 AM · Cleared, MITK (v2021.02)

Sep 23 2020

kalali closed T27659: Refactor BasicImageProcessing plugin to use the new node selection widgets as Resolved.
Sep 23 2020, 3:06 PM · MITK, Cleared
kalali closed T27659: Refactor BasicImageProcessing plugin to use the new node selection widgets, a subtask of T24775: Refactor plugins to use the new node selection widgets, as Resolved.
Sep 23 2020, 3:06 PM · MITK, Restricted Project, Cleared
kompan claimed T27115: [MITKDoc] Revise Matchpoint Frame Correction Plugin Documentation.
Sep 23 2020, 12:13 PM · Cleared, MITK (v2021.02)
kompan claimed T27116: [MITKDoc] Revise Matchpoint Algorithm Browser Plugin Documentation.
Sep 23 2020, 12:12 PM · Cleared, MITK (v2021.02)
kislinsk moved T27737: Extend "Checkliste Segmentierung – Optionen" from Backlog to Segmentation on the MITK (v2021.02) board.
Sep 23 2020, 10:31 AM · MITK (v2022.04), Cleared
kompan claimed T27745: [MITKDoc] Revise Model Fit Generic View Documentation.
Sep 23 2020, 9:37 AM · MITK (v2022.04)
kompan closed T27744: [MITKDoc] Revise Model Fit Demo View Documentation as Resolved.
Sep 23 2020, 9:37 AM · Cleared, MITK (v2021.02)
kompan added a comment to T27744: [MITKDoc] Revise Model Fit Demo View Documentation.

Pushed new branch bugfix/T27744-ReviseModelFitDemo.

Sep 23 2020, 9:32 AM · Cleared, MITK (v2021.02)
kompan closed T27104: [MITKDoc] Revise Modelfit Plugin Documentation as Resolved.
Sep 23 2020, 9:19 AM · Cleared, MITK (v2021.02)
kislinsk added a comment to T27196: Rewrite packaging of MITK.

Pushed new branch bugfix/T27196-RewritePackaging.

Sep 23 2020, 8:21 AM · MITK (v2024.06), Cleared
kislinsk added a comment to T27196: Rewrite packaging of MITK.

Sep 23 2020, 8:21 AM · MITK (v2024.06), Cleared

Sep 21 2020

kislinsk closed T27030: Packaging does not work with NSIS v3.x, a subtask of T27196: Rewrite packaging of MITK, as Resolved.
Sep 21 2020, 12:05 PM · MITK (v2024.06), Cleared
kalali added a revision to T27744: [MITKDoc] Revise Model Fit Demo View Documentation: Restricted Differential Revision.
Sep 21 2020, 10:54 AM · Cleared, MITK (v2021.02)

Sep 18 2020

thomass added a comment to T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

I think the things you changed are all reasonable, the things I would add (I can not do it atm because I don't have access to the document)

Sep 18 2020, 2:39 PM · MITK (v2022.04), Cleared
kompan closed T27743: Clean up table of contents of doxygen documentation as Resolved.
Sep 18 2020, 2:20 PM · Cleared, MITK (v2021.02)
kompan lowered the priority of T27745: [MITKDoc] Revise Model Fit Generic View Documentation from Normal to Low.
Sep 18 2020, 12:34 PM · MITK (v2022.04)
kompan claimed T27744: [MITKDoc] Revise Model Fit Demo View Documentation.
Sep 18 2020, 12:18 PM · Cleared, MITK (v2021.02)
kompan triaged T27745: [MITKDoc] Revise Model Fit Generic View Documentation as Normal priority.
Sep 18 2020, 10:41 AM · MITK (v2022.04)
kompan triaged T27744: [MITKDoc] Revise Model Fit Demo View Documentation as Normal priority.
Sep 18 2020, 10:40 AM · Cleared, MITK (v2021.02)
kompan claimed T27743: Clean up table of contents of doxygen documentation.
Sep 18 2020, 8:50 AM · Cleared, MITK (v2021.02)
kompan triaged T27743: Clean up table of contents of doxygen documentation as Normal priority.
Sep 18 2020, 8:50 AM · Cleared, MITK (v2021.02)

Sep 17 2020

kompan triaged T27739: Inspection positions deletion in ModelFit not updated in data display. as Normal priority.
Sep 17 2020, 1:07 PM · MITK (v2024.06), Cleared
kompan triaged T27738: Curve Color selection not possible in ModelFit Inspector view settings as Normal priority.
Sep 17 2020, 1:02 PM · MITK (v2023.12), Cleared

Sep 16 2020

thomass added a comment to T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

I agree :)

Sep 16 2020, 1:35 PM · MITK (v2022.04), Cleared
kalali added a comment to T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

We discussed the open todos concerning Checklists (storage, format, language) and decided that this topic should be prioritized higher but not for the milestone of the new release / current documentation refactoring.
I think this would be a good option for the phase after the release but if you have a strong point to do it now, please state here.

Sep 16 2020, 12:21 PM · MITK (v2022.04), Cleared
thomass added a comment to T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

just started to have a look.

Sep 16 2020, 12:06 PM · MITK (v2022.04), Cleared

Sep 15 2020

kalali raised the priority of T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung" from Normal to High.

@thomass, @gaoh Can someone please proofread?

Sep 15 2020, 8:11 PM · MITK (v2022.04), Cleared
kalali raised the priority of T27737: Extend "Checkliste Segmentierung – Optionen" from Normal to High.
Sep 15 2020, 8:02 PM · MITK (v2022.04), Cleared

Sep 14 2020

gaoh closed T27110: [MITKDoc] Revise Command Line Tool/ Automatisation Plugin Documentation as Resolved.
Sep 14 2020, 3:32 PM · Cleared, MITK (v2021.02)
kalali updated the task description for T27737: Extend "Checkliste Segmentierung – Optionen".
Sep 14 2020, 2:45 PM · MITK (v2022.04), Cleared
kalali triaged T27737: Extend "Checkliste Segmentierung – Optionen" as Normal priority.
Sep 14 2020, 2:42 PM · MITK (v2022.04), Cleared
kalali moved T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung" from Backlog to Segmentation on the MITK (v2021.02) board.
Sep 14 2020, 2:39 PM · MITK (v2022.04), Cleared

Sep 12 2020

kalali renamed T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung" from Extend "Checkliste Segmentierung – Manuelle Segmentierung" to Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".
Sep 12 2020, 1:04 PM · MITK (v2022.04), Cleared
kalali updated subscribers of T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

I updated the document and added content to explicitly test

  • segmentation on a 3D image
  • 3D segmentation (static) on a 4D image
  • 4D segmentation (dynamic) on a 4D image
Sep 12 2020, 12:56 PM · MITK (v2022.04), Cleared

Sep 11 2020

kislinsk added a subtask for T27196: Rewrite packaging of MITK: T27717: Mac OS: MITK Workbench&Flowbench crashes immediately after start .
Sep 11 2020, 12:25 PM · MITK (v2024.06), Cleared
kalali added a comment to T27506: Extend checklists for segmentation view.

What exactly? I copied the checklists to my local machine and I'm working on T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".

Sep 11 2020, 11:48 AM · MITK (v2022.04), Cleared
floca added a comment to T27506: Extend checklists for segmentation view.

Damn I have forgotten to copy the checklist to a reachable share. @kalali Is it already done now or obsolete?

Sep 11 2020, 10:33 AM · MITK (v2022.04), Cleared
kalali added a comment to T27506: Extend checklists for segmentation view.

All tools have to check for the following usage scenario:

  • All this with an image which time geometry does not start at 0 ms (e.g. MITK-Data/3D+t-ITKIO-TestData/LinearModel_4D_arbitrary_time_geometry.nrrd)
Sep 11 2020, 10:22 AM · MITK (v2022.04), Cleared
kalali triaged T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung" as Normal priority.
Sep 11 2020, 10:10 AM · MITK (v2022.04), Cleared