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Jan 8 2020

neher committed rMITKDIFF637013d65658: Merge branch 'T26960-FiberMapperTest' (authored by neher).
Merge branch 'T26960-FiberMapperTest'
Jan 8 2020, 11:54 AM
neher committed rMITKDIFFa6b236c2d4b4: Disable mapper test on ubuntu (authored by neher).
Disable mapper test on ubuntu
Jan 8 2020, 11:54 AM
gaoh reopened T24398: Dicom plugin: Retrieve does not work as "Open".

This does still not work (Retrieve from wdB fails, when going throw the "Checkliste DICOM Browser".
I have to look into this.

Jan 8 2020, 11:45 AM · MITK (v2024.06)
kahl triaged T26964: Version number not correctly displayed in Debug mode as Normal priority.
Jan 8 2020, 10:57 AM · MITK
gaoh triaged T26963: Dicom Browser progressbar not showing as Low priority.
Jan 8 2020, 10:51 AM · Auto-closed, MITK, Restricted Project
mittmann committed rMITK0d1d92e3e32a: Small adaptions of the fiducial localization process with regard to mri… (authored by mittmann).
Small adaptions of the fiducial localization process with regard to mri…
Jan 8 2020, 10:36 AM
nolden triaged T26962: Improve dynamic analysis and test coverage reporting as Wishlist priority.
Jan 8 2020, 10:32 AM · Auto-closed, CI, MITK
gaoh added a project to T18866: Highlighting in View Navigator is not updated: Restricted Project.

still not working, but it is part of the checklist "ViewNavigator"

Jan 8 2020, 10:15 AM · MITK (v2021.10), Restricted Project, Bugzilla
neher committed rMITKDIFFda57baa4f2d8: Merge branch 'T26960-FiberMapperTest' (authored by neher).
Merge branch 'T26960-FiberMapperTest'
Jan 8 2020, 9:57 AM
neher committed rMITKDIFFab678a1b5cae: Update fiber mapper test (authored by neher).
Update fiber mapper test
Jan 8 2020, 9:56 AM
neher added a comment to T26960: Fiber mapper test fails.

Pushed new branch T26960-FiberMapperTest.

Jan 8 2020, 9:56 AM · MITK Diffusion
neher triaged T26960: Fiber mapper test fails as Normal priority.
Jan 8 2020, 9:55 AM · MITK Diffusion
neher committed rMDb4673c84bf62: Update rendering data (authored by neher).
Update rendering data
Jan 8 2020, 9:53 AM

Jan 7 2020

• ramien committed rMDTPUBLICb0eacd38bd05: introduce tensorboard logging of monitor metrics instead of matplotlib plot (authored by • ramien).
introduce tensorboard logging of monitor metrics instead of matplotlib plot
Jan 7 2020, 7:48 PM
nolden added a comment to T26955: MitkQtPythonTest fails because of missing library dependencies on Linux.

I can confirm this works. One downside I realized with the current solution is that it only works if the test is executed through ctest, i.e. ctest -R Pytohn , but if you start the driver directly the same problem occurs. I think it is ok for now, but would be some motivation to find a solution that works without a special environment, since for example while debugging you usually start the executable directly.

Jan 7 2020, 5:45 PM · MITK
kalali triaged T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary" as Normal priority.
Jan 7 2020, 4:47 PM · MITK (v2024.06), Checklist, Request for Discussion
kalali created T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary".
Jan 7 2020, 4:47 PM · MITK (v2024.06), Checklist, Request for Discussion
kislinsk closed T26955: MitkQtPythonTest fails because of missing library dependencies on Linux as Resolved.
Jan 7 2020, 4:33 PM · MITK
kislinsk closed T26955: MitkQtPythonTest fails because of missing library dependencies on Linux, a subtask of T26888: MITK_BUILD_CONFIGURATION "All" reveals some failing tests on CI build clients, as Resolved.
Jan 7 2020, 4:33 PM · MITK
kislinsk committed rMITK113ddd8808d2: Merge branch 'T26955-FixPythonTestEnv' (authored by kislinsk).
Merge branch 'T26955-FixPythonTestEnv'
Jan 7 2020, 4:33 PM
kislinsk committed rMITK8b6094784d76: Reactivate test on Windows (authored by kislinsk).
Reactivate test on Windows
Jan 7 2020, 4:32 PM
kislinsk added a comment to T19153: Python tests can't be run on the dartclient on Windows.

We noticed in T26955 that the test is able to run on Windows.

Jan 7 2020, 4:31 PM · Bugzilla, MITK
kislinsk committed rMITK1260dfb17afe: Add hint to Phabricator task. (authored by kislinsk).
Add hint to Phabricator task.
Jan 7 2020, 4:22 PM
kislinsk committed rMITKb89b18f9faa8: Use LD_LIBRARY_PATH to execute mitkPythonTest (authored by kislinsk).
Use LD_LIBRARY_PATH to execute mitkPythonTest
Jan 7 2020, 4:19 PM
kislinsk added a comment to T26955: MitkQtPythonTest fails because of missing library dependencies on Linux.

Pushed new branch T26955-FixPythonTestEnv.

Jan 7 2020, 4:18 PM · MITK
kalali triaged T26958: LevelWindow Preset Dialog does not work correctly as Normal priority.
Jan 7 2020, 3:35 PM · MITK
kalali triaged T26957: LevelWindow context menu entries change default level-window as Normal priority.
Jan 7 2020, 1:50 PM · Auto-closed, MITK, Restricted Project
kalali created T26957: LevelWindow context menu entries change default level-window.
Jan 7 2020, 1:49 PM · Auto-closed, MITK, Restricted Project
• ramien committed rMDTPUBLIC34add033febe: load saved models directly instead from tmp_model, tmp_backbone (authored by • ramien).
load saved models directly instead from tmp_model, tmp_backbone
Jan 7 2020, 1:03 PM
kalali triaged T26956: LevelWindow slider does not expand the level/window scale as Normal priority.
Jan 7 2020, 12:57 PM · MITK
kislinsk triaged T26955: MitkQtPythonTest fails because of missing library dependencies on Linux as Normal priority.
Jan 7 2020, 12:52 PM · MITK
neher added a comment to T26903: DICOM Seg writing is broken due to changes in DICOMSEGIOMimeType.

Looks good. Don't see a problem.

Jan 7 2020, 8:50 AM · MITK

Jan 2 2020

franza committed rMITK14ebe5a2d67b: Fixing camera to marker functional now, however initialization is not fully… (authored by franza).
Fixing camera to marker functional now, however initialization is not fully…
Jan 2 2020, 6:01 PM
• ramien committed rREGRCNNb097633038a5: reqs (authored by • ramien).
reqs
Jan 2 2020, 2:53 PM
• ramien committed rREGRCNNe7e4d4bbfc36: detection_fpn no norm in last layer (authored by • ramien).
detection_fpn no norm in last layer
Jan 2 2020, 2:53 PM
• ramien committed rREGRCNNa1d21a85c0cf: detection_fpn no norm in last layer (authored by • ramien).
detection_fpn no norm in last layer
Jan 2 2020, 2:53 PM

Dec 30 2019

franza committed rMITK365ae02caab4: Removed console output to make is faster (authored by franza).
Removed console output to make is faster
Dec 30 2019, 1:16 PM
franza committed rMITK71735a668874: added UI feature to modify the update rate / speed of the virtual tracker (authored by franza).
added UI feature to modify the update rate / speed of the virtual tracker
Dec 30 2019, 1:15 PM
franza committed rMITK68df2c730363: Started adding code for moving the camera with the reference marker (not fully… (authored by franza).
Started adding code for moving the camera with the reference marker (not fully…
Dec 30 2019, 1:15 PM
franza added a comment to T26609: US Navigation / Tracked US: CT Registration Demo.

Pushed new branch T26609-FixCameraToMarker2ndTry.

Dec 30 2019, 1:15 PM · Auto-closed, IGT, MITK

Dec 23 2019

kislinsk triaged T26949: DICOM SEG - 3D segmentations with only one slice cannot be reloaded as DICOM SEG as Normal priority.
Dec 23 2019, 2:55 PM · Auto-closed, MITK, DICOM, Missing Info
kislinsk triaged T26951: DICOM SEG - DicomSegIO should just use properties of the passed segmentation object as Normal priority.
Dec 23 2019, 2:54 PM · MITK (v2024.06)
kislinsk triaged T26953: DICOM SEG - Cannot rewrite segmentations as DICOM SEG as Normal priority.
Dec 23 2019, 2:54 PM · MITK (v2024.06), Cleared
kislinsk closed T26954: Use Visual Studio project folder feature for MITK and MITK extensions as Resolved.
Dec 23 2019, 2:53 PM · MITK, Noteworthy
kislinsk added a comment to T26954: Use Visual Studio project folder feature for MITK and MITK extensions.

In Visual Studio, all MITK targets are now categorized in folders. MITK extension targets have their own root folder.

Dec 23 2019, 2:53 PM · MITK, Noteworthy
kislinsk committed rMITKfcd6631834ea: Merge branch 'T26954-UseFolders' into releases/2018-04 (authored by kislinsk).
Merge branch 'T26954-UseFolders' into releases/2018-04
Dec 23 2019, 2:52 PM
kislinsk committed rMITK0e0bcfc78ed1: Merge remote-tracking branch 'origin/T26954-UseFolders' (authored by kislinsk).
Merge remote-tracking branch 'origin/T26954-UseFolders'
Dec 23 2019, 2:51 PM
kislinsk committed rMITK8e156483616c: Merge remote-tracking branch 'origin/T26954-UseFolders' (authored by kislinsk).
Merge remote-tracking branch 'origin/T26954-UseFolders'
Dec 23 2019, 2:51 PM
kislinsk committed rMITK51ee1c19203d: Merge remote-tracking branch 'origin/T26954-UseFolders' (authored by kislinsk).
Merge remote-tracking branch 'origin/T26954-UseFolders'
Dec 23 2019, 2:51 PM
kislinsk committed rMITKe3782b339f55: Merge remote-tracking branch 'origin/T26954-UseFolders' (authored by kislinsk).
Merge remote-tracking branch 'origin/T26954-UseFolders'
Dec 23 2019, 2:51 PM
kislinsk committed rMITK02265dcc26d1: Move MatchPointAlgorithms into Modules (authored by kislinsk).
Move MatchPointAlgorithms into Modules
Dec 23 2019, 2:51 PM
kislinsk committed rMITKbac1e5791cb9: Mix missing property name (authored by kislinsk).
Mix missing property name
Dec 23 2019, 2:45 PM
kislinsk committed rMITKc57f76b198ca: Put command-line apps into Modules/Executables folder (authored by kislinsk).
Put command-line apps into Modules/Executables folder
Dec 23 2019, 2:45 PM
kislinsk committed rMITKac1c3bd39b0f: Categorize remaining targets (authored by kislinsk).
Categorize remaining targets
Dec 23 2019, 2:38 PM
kislinsk committed rMITKf04b1ca5b861: Use folders for target/project organization (authored by kislinsk).
Use folders for target/project organization
Dec 23 2019, 2:10 PM
kislinsk added a comment to T26954: Use Visual Studio project folder feature for MITK and MITK extensions.

Pushed new branch T26954-UseFolders.

Dec 23 2019, 2:10 PM · MITK, Noteworthy
kislinsk triaged T26954: Use Visual Studio project folder feature for MITK and MITK extensions as Wishlist priority.
Dec 23 2019, 1:59 PM · MITK, Noteworthy

Dec 20 2019

floca added a parent task for T26951: DICOM SEG - DicomSegIO should just use properties of the passed segmentation object: T25192: Enable DICOM SEG conversion for nrrd segmentations.
Dec 20 2019, 11:03 PM · MITK (v2024.06)
floca added a parent task for T26952: Implement helper to correct (DICOM conformal) set the properties of a segmentation (DICOM SEG): T25192: Enable DICOM SEG conversion for nrrd segmentations.
Dec 20 2019, 11:03 PM · MITK (v2024.06)
floca added subtasks for T25192: Enable DICOM SEG conversion for nrrd segmentations: T26952: Implement helper to correct (DICOM conformal) set the properties of a segmentation (DICOM SEG), T26951: DICOM SEG - DicomSegIO should just use properties of the passed segmentation object.
Dec 20 2019, 11:03 PM · MITK (v2024.06), MICO (Demo MICCAI 2018)
floca added a comment to T25192: Enable DICOM SEG conversion for nrrd segmentations.

I don't know the status of the branch above as it is dangeling arround for quite some time.

Dec 20 2019, 11:00 PM · MITK (v2024.06), MICO (Demo MICCAI 2018)
floca added a parent task for T25988: LabelSetImageIO should support time geometries and property serialization: T25192: Enable DICOM SEG conversion for nrrd segmentations.
Dec 20 2019, 10:55 PM · MITK (v2021.02)
floca added a subtask for T25192: Enable DICOM SEG conversion for nrrd segmentations: T25988: LabelSetImageIO should support time geometries and property serialization.
Dec 20 2019, 10:55 PM · MITK (v2024.06), MICO (Demo MICCAI 2018)
floca updated the task description for T26953: DICOM SEG - Cannot rewrite segmentations as DICOM SEG.
Dec 20 2019, 10:51 PM · MITK (v2024.06), Cleared
floca added a parent task for T26951: DICOM SEG - DicomSegIO should just use properties of the passed segmentation object: T26953: DICOM SEG - Cannot rewrite segmentations as DICOM SEG.
Dec 20 2019, 10:51 PM · MITK (v2024.06)
floca added a subtask for T26953: DICOM SEG - Cannot rewrite segmentations as DICOM SEG: T26951: DICOM SEG - DicomSegIO should just use properties of the passed segmentation object.
Dec 20 2019, 10:51 PM · MITK (v2024.06), Cleared
floca created T26953: DICOM SEG - Cannot rewrite segmentations as DICOM SEG.
Dec 20 2019, 10:50 PM · MITK (v2024.06), Cleared
floca renamed T26952: Implement helper to correct (DICOM conformal) set the properties of a segmentation (DICOM SEG) from Implement helper to correct (DICOM conforma) set the properties of a segmentation (DICOM SEG) to Implement helper to correct (DICOM conformal) set the properties of a segmentation (DICOM SEG).
Dec 20 2019, 10:48 PM · MITK (v2024.06)
floca added a subtask for T26952: Implement helper to correct (DICOM conformal) set the properties of a segmentation (DICOM SEG): T26950: Add rule class for DICOM Seg relations to source image.
Dec 20 2019, 10:48 PM · MITK (v2024.06)
floca added a parent task for T26950: Add rule class for DICOM Seg relations to source image: T26952: Implement helper to correct (DICOM conformal) set the properties of a segmentation (DICOM SEG).
Dec 20 2019, 10:48 PM · MITK (v2024.06), Cleared
floca edited parent tasks for T26952: Implement helper to correct (DICOM conformal) set the properties of a segmentation (DICOM SEG), added: T26951: DICOM SEG - DicomSegIO should just use properties of the passed segmentation object; removed: T23774: Implement helper to correctly (DICOM conformal) parameterize images (or other BaseData derived classes).
Dec 20 2019, 10:48 PM · MITK (v2024.06)
floca added a subtask for T26951: DICOM SEG - DicomSegIO should just use properties of the passed segmentation object: T26952: Implement helper to correct (DICOM conformal) set the properties of a segmentation (DICOM SEG).
Dec 20 2019, 10:48 PM · MITK (v2024.06)
floca removed a subtask for T23774: Implement helper to correctly (DICOM conformal) parameterize images (or other BaseData derived classes): T26952: Implement helper to correct (DICOM conformal) set the properties of a segmentation (DICOM SEG).
Dec 20 2019, 10:48 PM · MITK
floca triaged T26952: Implement helper to correct (DICOM conformal) set the properties of a segmentation (DICOM SEG) as Normal priority.
Dec 20 2019, 10:48 PM · MITK (v2024.06)
floca added a subtask for T26951: DICOM SEG - DicomSegIO should just use properties of the passed segmentation object: T26950: Add rule class for DICOM Seg relations to source image.
Dec 20 2019, 10:42 PM · MITK (v2024.06)
floca added a parent task for T26950: Add rule class for DICOM Seg relations to source image: T26951: DICOM SEG - DicomSegIO should just use properties of the passed segmentation object.
Dec 20 2019, 10:42 PM · MITK (v2024.06), Cleared
floca created T26951: DICOM SEG - DicomSegIO should just use properties of the passed segmentation object.
Dec 20 2019, 10:39 PM · MITK (v2024.06)
floca triaged T26950: Add rule class for DICOM Seg relations to source image as Normal priority.
Dec 20 2019, 10:19 PM · MITK (v2024.06), Cleared
floca updated the task description for T26843: Rethink/CleanUp PropertyRelation connection levels and RII properties used in SourceImageRelationRule.
Dec 20 2019, 10:14 PM · MITK (v2021.02), Restricted Project
floca updated the task description for T26843: Rethink/CleanUp PropertyRelation connection levels and RII properties used in SourceImageRelationRule.
Dec 20 2019, 10:13 PM · MITK (v2021.02), Restricted Project
floca created T26949: DICOM SEG - 3D segmentations with only one slice cannot be reloaded as DICOM SEG .
Dec 20 2019, 9:34 PM · Auto-closed, MITK, DICOM, Missing Info
floca updated the task description for T26903: DICOM Seg writing is broken due to changes in DICOMSEGIOMimeType.
Dec 20 2019, 9:18 PM · MITK
kislinsk added a comment to T26930: Crash Ubuntu 18.04.3 Qt 5.12.4.

TL;DR: MitkWorkbench --BlueBerry.clean works again.

Dec 20 2019, 8:03 PM · MITK
kislinsk closed T26930: Crash Ubuntu 18.04.3 Qt 5.12.4 as Resolved.
Dec 20 2019, 8:00 PM · MITK
kislinsk added a comment to T26930: Crash Ubuntu 18.04.3 Qt 5.12.4.

It's a GCC bug that bit us in the past already and that's why we were pre-loading org.mitk.gui.qt.common. Now it's org.blueberry.core.expressions.

Dec 20 2019, 8:00 PM · MITK
franza committed rMITKc6ee902bb593: started to implement fixing the camera view position to the reference marker… (authored by franza).
started to implement fixing the camera view position to the reference marker…
Dec 20 2019, 7:53 PM
franza committed rMITK936ca92ee2a8: Added methods to get/set the camera transformation (authored by franza).
Added methods to get/set the camera transformation
Dec 20 2019, 7:53 PM
franza added a comment to T26609: US Navigation / Tracked US: CT Registration Demo.

Pushed new branch T26609-FixCameraToMarker.

Dec 20 2019, 7:53 PM · Auto-closed, IGT, MITK
kislinsk committed rMITKba83f51a8ff9: Merge branch 'T26930-FixPreloading' (authored by kislinsk).
Merge branch 'T26930-FixPreloading'
Dec 20 2019, 7:46 PM
kislinsk committed rMITKf22aa6c62e6b: Fix pre-loading of org.blueberry.core.expressions (authored by kislinsk).
Fix pre-loading of org.blueberry.core.expressions
Dec 20 2019, 7:39 PM
kislinsk added a comment to T26930: Crash Ubuntu 18.04.3 Qt 5.12.4.

Pushed new branch T26930-FixPreloading.

Dec 20 2019, 7:39 PM · MITK
kislinsk claimed T26930: Crash Ubuntu 18.04.3 Qt 5.12.4.
Dec 20 2019, 7:23 PM · MITK
kislinsk closed T26942: Crash on DICOM loading as Resolved.
Dec 20 2019, 3:30 PM · DICOM, Kaapana (internal), MITK
kislinsk committed rMITKfc9eb6fb17b5: Merge branch 'T26942-ImproveCESTPrivateTagParsing' (authored by kislinsk).
Merge branch 'T26942-ImproveCESTPrivateTagParsing'
Dec 20 2019, 3:28 PM
kislinsk committed rMITKd51de1cd1846: Fix wrong assumption made about ASCII format (authored by kislinsk).
Fix wrong assumption made about ASCII format
Dec 20 2019, 3:27 PM
franza committed rMITK895edd232597: CT registration demo running (display transformations to console only once at… (authored by franza).
CT registration demo running (display transformations to console only once at…
Dec 20 2019, 3:27 PM
franza committed rMITKc8e7a90f32f8: added initialization button for initial check of combined modality (authored by franza).
added initialization button for initial check of combined modality
Dec 20 2019, 1:51 PM
franza committed rMITK4b80dc832a83: stopping timer after calibration to avoid a bug and be able to save the… (authored by franza).
stopping timer after calibration to avoid a bug and be able to save the…
Dec 20 2019, 1:51 PM
adler added a member for Photoacoustics: j806e.
Dec 20 2019, 1:18 PM
kislinsk reopened T26942: Crash on DICOM loading as "Open".

CI

Dec 20 2019, 12:48 PM · DICOM, Kaapana (internal), MITK
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