All build configuration now works on Windows, Ubuntu, and macOS. OpenMesh also integrated but the remeshing/decimation is not yet implemented to replace the old functionality of ACVD.

Nov 7 2020, 8:36 AM · Noteworthy, MITK (v2021.02)

Nov 6 2020

eisenman triaged T27933: [shiny] Bootstrapping is performed even if it was disabled as High priority.

Nov 6 2020, 4:25 PM · webChallengeR

eisenman triaged T27932: [shiny] Metric value column cannot be selected as High priority.

Nov 6 2020, 2:34 PM · webChallengeR

kislinsk added a comment to T27461: Update MITK to use VTK 9.

Found very old isolated code (everything related to mitk::Mesh), that I would like to drop instead of migrate. Seems to be from the time when Visual C++ 6.0 was a thing. :D

Nov 6 2020, 1:27 PM · Noteworthy, MITK (v2021.02)

wiesenfa moved T27708: ggplot2 dendrogram from v1.0 to Backlog on the challengeR board.

Nov 6 2020, 11:29 AM · challengeR

wiesenfa claimed T27915: Podium plot shrinks for long algorithm names.

Nov 6 2020, 11:26 AM · challengeR (v1.0)

wiesenfa added a comment to T27925: Use cases of annotator option.

should be working but hasn't been really tested lately. only applies to rank then aggregate. originates from nature communications paper and should be explained there.
For testing I could again compare to Annette's code used at that time.
Wouldn't drop it but you are right that documentation is missing

Nov 6 2020, 11:25 AM · challengeR

Nov 5 2020

kislinsk added a comment to T27931: Use OpenMesh for remeshing instead of ACVD.

Pushed new branch feature/T27931-OpenMesh.

Nov 5 2020, 11:28 PM · Noteworthy, MITK (v2021.02)

kislinsk triaged T27931: Use OpenMesh for remeshing instead of ACVD as Wishlist priority.

Nov 5 2020, 4:19 PM · Noteworthy, MITK (v2021.02)

kislinsk added a comment to T27461: Update MITK to use VTK 9.

Migrating ACVD to VTK 9 is not a trivial task as it heavily depends on VTK's data structures that fundamentally changed between VTK 8 and VTK 9. I already spent some hours and managed to compile ACVD but I still get runtime errors related to all the indexing in data structures. Given that ACVD is maintained by only a single person and most of the upgrades over the past years were contributions, I really think that we should look for alternatives to replace ACVD. Its choice to be deeply entangled with VTK for mesh processing added a lot of complexity and I really want to get rid of the additional VTK dependency. There were some advancements over the past years in terms of remeshing/mesh decimation and I already found solid CMake-based, license-friendly alternatives like OpenMesh.

Nov 5 2020, 4:17 PM · Noteworthy, MITK (v2021.02)

kahl closed T27501: Reimplement image transfer between MITK and Python as Resolved.

This task can be closed. Future work on this is done in T27923.

Nov 5 2020, 8:13 AM · MITK

kahl closed T27501: Reimplement image transfer between MITK and Python, a subtask of T27499: Reimplement MITK-Python-Service, as Resolved.

Nov 5 2020, 8:13 AM · MITK

kahl closed T27564: [Segmentation] Integrate deep learning methods for Segmentation in MITK as Resolved.

This task can be closed. Future work on this is done in T27923.

Nov 5 2020, 8:12 AM · MITK

kahl closed T27500: Use Python/C-API for execution of Python Code with MITK-Python-Service, a subtask of T27499: Reimplement MITK-Python-Service, as Resolved.

Nov 5 2020, 8:12 AM · MITK

kahl closed T27500: Use Python/C-API for execution of Python Code with MITK-Python-Service as Resolved.

This task can be closed. Future work on this is done in T27923.

Nov 5 2020, 8:12 AM · MITK

kahl closed T27499: Reimplement MITK-Python-Service as Resolved.

This task can be closed. Future work on this is done in T27923.

Nov 5 2020, 8:11 AM · MITK

kislinsk added a comment to T27461: Update MITK to use VTK 9.

I migrated the old branch to the changes in develop since June.

Nov 5 2020, 3:22 AM · Noteworthy, MITK (v2021.02)

kislinsk added a comment to T27461: Update MITK to use VTK 9.

Pushed new branch feature/T27461-VTK9.

Nov 5 2020, 3:21 AM · Noteworthy, MITK (v2021.02)

kislinsk added a comment to T27461: Update MITK to use VTK 9.

Deleted branch feature/T27461-VTK9.

Nov 5 2020, 3:21 AM · Noteworthy, MITK (v2021.02)

Nov 4 2020

wiesenfa moved T27360: compatibility with R4.0.0 from Backlog to Done on the challengeR (v1.0) board.

Nov 4 2020, 8:07 PM · challengeR (v1.0)

wiesenfa claimed T27360: compatibility with R4.0.0.

Nov 4 2020, 8:07 PM · challengeR (v1.0)

wiesenfa added a comment to T27360: compatibility with R4.0.0.

I'm using R 4.0.2 since summer without issues

Nov 4 2020, 8:06 PM · challengeR (v1.0)

wiesenfa added a comment to T27775: only export functions to be used by user.

also roxygen import and also intitialization of S3 methods have to be written in roxygen then and the namespace file is then entirely written by roxygenization (ideally indcluding help)

Nov 4 2020, 8:05 PM · challengeR

eisenman added a comment to T27775: only export functions to be used by user.

I started with the roxygen documentation and found that the NAMESPACE file can be generated automatically by using the "export" tag.

Nov 4 2020, 7:39 PM · challengeR

eisenman added a comment to T27360: compatibility with R4.0.0.

I did not try it yet. Did you? Currently, I don't want to take the risk of breaking my running development environment.

Nov 4 2020, 7:28 PM · challengeR (v1.0)

eisenman added a comment to T27915: Podium plot shrinks for long algorithm names.

The legend could be moved to the bottom.

Nov 4 2020, 7:25 PM · challengeR (v1.0)

eisenman created T27930: Revise examples given in the vignettes.

Nov 4 2020, 7:24 PM · challengeR (v1.0)