Feed All Stories

All Stories
Use Results
Edit Query
Hide Query

Dec 20 2020

eisenman closed T27316: Aggregate-than-rank does not throw an error when an invalid NA treatment option is specified as Resolved.

Dec 20 2020, 9:33 PM · challengeR (v1.0)

eisenman closed T27302: Add sections to the readme as Resolved.

Dec 20 2020, 9:33 PM · challengeR (v1.0)

eisenman closed T27237: Implement tests for ranking method "aggregate-then-rank" as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27301: Add on boarding tutorial as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27244: Implement tests for the "challenge" class as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27236: Set up test infrastructure as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27407: Warnings are shown in multi-task challenge report for violin plot as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27656: make sure data set is data.frame as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27411: Improve labels in cluster dendrogram as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27327: warning in docx report as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27449: Consistent handling of plots created for multi-task data sets as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27287: is warning given if na.treat unspecified in rank-first and obligatory otherwise as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27694: Fix failing unit tests as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27253: Notify user when multi-task data set is interpreted as single-task data set as Resolved.

Dec 20 2020, 9:31 PM · challengeR (v1.0)

eisenman closed T27385: Variables holding the aggregated value are named differently for single- and multi-task challenges as Resolved.

Dec 20 2020, 9:31 PM · challengeR (v1.0)

eisenman closed T27657: When missing algorithm performances are added as NAs, task is also NA as Resolved.

Dec 20 2020, 9:31 PM · challengeR (v1.0)

eisenman closed T27715: Specify minimum required versions of dependencies as Resolved.

Dec 20 2020, 9:31 PM · challengeR (v1.0)

eisenman closed T27252: Multiple cases per algorithm are not detected when missing data was added before as Resolved.

Dec 20 2020, 9:30 PM · challengeR (v1.0)

eisenman closed T27740: Add missing imports as Resolved.

Dec 20 2020, 9:30 PM · challengeR (v1.0)

eisenman closed T27658: LaTeX Warning: There were undefined references as Resolved.

Dec 20 2020, 9:30 PM · challengeR (v1.0)

eisenman closed T27475: Legend of blob plot has missing legend title and algorithms as Resolved.

Dec 20 2020, 9:30 PM · challengeR (v1.0)

eisenman closed T27474: Legend of line plot has missing legend title and algorithm as Resolved.

Dec 20 2020, 9:30 PM · challengeR (v1.0)

eisenman closed T27677: Update text in reports (feedback from Lena) as Resolved.

Dec 20 2020, 9:30 PM · challengeR (v1.0)

eisenman closed T27769: Top x performing algorithms are not mentioned in the reports anymore as Resolved.

Dec 20 2020, 9:30 PM · challengeR (v1.0)

eisenman closed T27338: Report contains misleading information on missing values as Resolved.

Dec 20 2020, 9:30 PM · challengeR (v1.0)

eisenman closed T27773: package dependencies as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27294: add multiple figure output formats in report with option clean=TRUE as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27337: Report contains wrong ranking method when rank-then-aggregate is used as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27452: Provide plot function for dendrogram as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27714: Report contains weird R output as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27453: Create complete network plot in its function as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27776: Failing unit tests for subset of tasks as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27685: changes in subset() as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27777: Failing unit tests for challenge as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27774: wrong text in report on algorithm subsets as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27447: significanceMap function raises warning about deprecated function call as Resolved.

Dec 20 2020, 9:27 PM · challengeR (v1.0)

eisenman closed T27770: Inconsistency in report description as Resolved.

Dec 20 2020, 9:27 PM · challengeR (v1.0)

eisenman closed T27282: Implement tests for ranking method "test-then-rank" based on Wilcoxon signed rank test as Resolved.

Dec 20 2020, 9:27 PM · challengeR (v1.0)

eisenman closed T27686: tutorial can be added as vignette to embed it in the package as Resolved.

Dec 20 2020, 9:27 PM · challengeR (v1.0)

eisenman closed T27450: Consistent use of attribute indicating whether small metric values lead to a better rank as Resolved.

Dec 20 2020, 9:26 PM · challengeR (v1.0)

eisenman closed T27804: Message text from violin plot is cut off in the PDF report as Resolved.

Dec 20 2020, 9:26 PM · challengeR (v1.0)

eisenman closed T27793: Plot titles are missing in some line plots as Resolved.

Dec 20 2020, 9:26 PM · challengeR (v1.0)

eisenman closed T27778: turn off networks as Resolved.

Dec 20 2020, 9:26 PM · challengeR (v1.0)

eisenman closed T27456: Extraction of task subset from (bootstrap) ranking does not raise an error for invalid task name as Resolved.

Dec 20 2020, 9:26 PM · challengeR (v1.0)

eisenman closed T27794: Stacked frequency plots should switch to single page layout as Resolved.

Dec 20 2020, 9:26 PM · challengeR (v1.0)

eisenman closed T27802: Revise signature of function testThenRank as Resolved.

Dec 20 2020, 9:26 PM · challengeR (v1.0)

eisenman closed T27922: Remove network plot from report overview as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T27278: Writing documentation for main functions as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T27929: Provide documentation for plot functions as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T27930: Revise examples given in the vignettes as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T27996: Restructure troubleshooting section as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T27420: report text as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T28055: respect color scheme also for box plots as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T28033: +scale_* seems to not work in combination with ggList objects as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T27963: Task names printed as R output in Sec. 3.1 of multi-task report as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T27360: compatibility with R4.0.0 as Resolved.

Also successfully checked for Ubuntu 18.04 and R version 4.0.3.

Dec 20 2020, 9:24 PM · challengeR (v1.0)

eisenman closed T27707: na.treat obligatory for report as Resolved.

Dec 20 2020, 9:23 PM · challengeR (v1.0)

eisenman closed T27241: Readme improvements as Resolved.

Dec 20 2020, 9:23 PM · challengeR (v1.0)

eisenman closed T27915: Podium plot shrinks for long algorithm names as Resolved.

Dec 20 2020, 9:22 PM · challengeR (v1.0)

eisenman closed T27748: Decide on limit for algorithms in plot legends as Resolved.

Dec 20 2020, 9:22 PM · challengeR (v1.0)

eisenman closed T27943: Plot function stability() raises error when used with default values as Resolved.

Dec 20 2020, 9:22 PM · challengeR (v1.0)

eisenman closed T28085: Report generation is broken as Resolved.

Dec 20 2020, 9:22 PM · challengeR (v1.0)

eisenman closed T27971: Provide code for podium plot in vignette "Visualizations" as Resolved.

Dec 20 2020, 9:22 PM · challengeR (v1.0)

eisenman closed T27292: Fix toolkit authors as Resolved.

Dec 20 2020, 9:22 PM · challengeR (v1.0)

eisenman closed T28112: colors in box plots multitask not consistent as Resolved.

Dec 20 2020, 9:22 PM · challengeR (v1.0)

eisenman closed T27291: update license file as Resolved.

Dec 20 2020, 9:22 PM · challengeR (v1.0)

eisenman closed T27998: Interpretation of consensus ranking values needs further explanation as Resolved.

Dec 20 2020, 9:21 PM · challengeR (v1.0)

eisenman closed T28119: Unit tests are failing on Ubuntu due to mismatching messages as Resolved.

Dec 20 2020, 9:21 PM · challengeR (v1.0)

eisenman closed T28097: test errors in aggregateThenRank and rankThenAggregate as Resolved.

Dec 20 2020, 9:21 PM · challengeR (v1.0)

eisenman closed T28123: Add notes for Linux users to readme as Resolved.

Dec 20 2020, 9:21 PM · challengeR (v1.0)

eisenman closed T28120: Write release notes for challengeR v1.0 as Resolved.

Dec 20 2020, 9:21 PM · challengeR (v1.0)

eisenman committed rCHALLENGER565de37af81a: Merge tag 'T28125-v1.0.0' into develop (authored by eisenman).

Merge tag 'T28125-v1.0.0' into develop

Dec 20 2020, 9:18 PM

eisenman committed rCHALLENGER55b014bdb3b9: Merge branch 'release/T28125-v1.0.0' (authored by eisenman).

Merge branch 'release/T28125-v1.0.0'

Dec 20 2020, 9:12 PM

eisenman committed rCHALLENGER99079cc3c626: Bump version number (authored by eisenman).

Bump version number

Dec 20 2020, 9:00 PM

eisenman committed rCHALLENGER4bdcc0e9afb4: Add release notes (authored by eisenman).

Add release notes

Dec 20 2020, 8:58 PM

eisenman moved T28125: challangeR Release v1.0.0 from Backlog to In Progress on the challengeR (v1.0) board.

Dec 20 2020, 8:29 PM · challengeR (v1.0)

eisenman moved T28120: Write release notes for challengeR v1.0 from In Progress to Done on the challengeR (v1.0) board.

Dec 20 2020, 8:27 PM · challengeR (v1.0)

eisenman closed T28121: Remove parallel bootstrapping from quick-start scripts as Wontfix.

Dec 20 2020, 8:26 PM · challengeR (v1.0)

eisenman triaged T28125: challangeR Release v1.0.0 as High priority.

Dec 20 2020, 8:26 PM · challengeR (v1.0)

eisenman closed T28122: Fix layout of logos at the end of the readme file as Resolved.

Dec 20 2020, 8:20 PM · challengeR (v1.0)

Dec 18 2020

wiesenfa created T28124: add line plot (like methods plot) across tasks to report.

Dec 18 2020, 6:28 PM · challengeR

eisenman added a comment to T28120: Write release notes for challengeR v1.0.

Changes:

Revision of the underlying data structure
Roxygen documentation for main functionality
Vignettes for quickstart and overview of available plots demonstrating the use of their corresponding plot functions
Introduction of unit tests (package coverage >70%)
Troubleshooting section covering potential issues during setup
Finally: Extensive bug fixes and improvements (for a complete overview please check the Phabricator tasks)

Dec 18 2020, 12:22 PM · challengeR (v1.0)

eisenman moved T28120: Write release notes for challengeR v1.0 from Backlog to In Progress on the challengeR (v1.0) board.

Dec 18 2020, 12:01 PM · challengeR (v1.0)

eisenman moved T28122: Fix layout of logos at the end of the readme file from In Progress to Done on the challengeR (v1.0) board.

Dec 18 2020, 10:35 AM · challengeR (v1.0)

eisenman committed rCHALLENGERe70e0f204d79: Merge branch 'feature/T28122-LogoLayout' into develop (authored by eisenman).

Merge branch 'feature/T28122-LogoLayout' into develop

Dec 18 2020, 10:35 AM

eisenman committed rCHALLENGER7ba034d29fab: Adapt size of logos (authored by eisenman).

Adapt size of logos

Dec 18 2020, 10:28 AM

eisenman committed rCHALLENGERda0a62e8bd7e: Use HIP logo with transparent background (authored by eisenman).

Use HIP logo with transparent background

Dec 18 2020, 10:28 AM

eisenman moved T28122: Fix layout of logos at the end of the readme file from Backlog to In Progress on the challengeR (v1.0) board.

Dec 18 2020, 10:15 AM · challengeR (v1.0)

eisenman moved T28123: Add notes for Linux users to readme from In Progress to Done on the challengeR (v1.0) board.

Dec 18 2020, 10:15 AM · challengeR (v1.0)

eisenman committed rCHALLENGER30158bc6e88b: Merge branch 'feature/T28123-ReadmeImprovements' into develop (authored by eisenman).

Merge branch 'feature/T28123-ReadmeImprovements' into develop

Dec 18 2020, 10:14 AM

eisenman committed rCHALLENGERcabb1f1d24f7: Add reference to vignettes (authored by eisenman).

Add reference to vignettes

Dec 18 2020, 10:12 AM

eisenman committed rCHALLENGER37e3667b357c: Add hint for Linux users how to resolve some errors during installation (authored by eisenman).

Add hint for Linux users how to resolve some errors during installation

Dec 18 2020, 10:12 AM

eisenman moved T28123: Add notes for Linux users to readme from Backlog to In Progress on the challengeR (v1.0) board.

Dec 18 2020, 9:26 AM · challengeR (v1.0)

kislinsk closed T26237: Improve performance for interactions in 2d widgets as Resolved.

Dec 18 2020, 4:03 AM · MITK

kislinsk added a comment to T26237: Improve performance for interactions in 2d widgets.

Deleted branch bugfix/T26237-ImprovePerformance.

Dec 18 2020, 4:02 AM · MITK

kislinsk committed rMITKbf264ce891b8: Improve performance (authored by kislinsk).

Improve performance

Dec 18 2020, 4:02 AM

kislinsk committed rMITKd05bd6a2660b: Merge remote-tracking branch 'origin/develop' into bugfix/T26237… (authored by kislinsk).

Merge remote-tracking branch 'origin/develop' into bugfix/T26237…

Dec 18 2020, 4:02 AM

kislinsk committed rMITKdbbf947882f4: Improve ITK patch (authored by kislinsk).

Improve ITK patch

Dec 18 2020, 4:02 AM

kislinsk committed rMITKdc76958e5051: Merge branch 'bugfix/T26237-ImprovePerformance' into develop (authored by kislinsk).

Merge branch 'bugfix/T26237-ImprovePerformance' into develop

Dec 18 2020, 4:02 AM

Dec 17 2020

kislinsk renamed Phabricator Onboarding from Phabricator onboarding to Phabricator Onboarding.

Dec 17 2020, 7:59 PM · Onboarding