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Apr 26 2019

floca added inline comments to rMITK750daa0b6d2b: Fixed crash for single time step segmentations.
Apr 26 2019, 10:31 PM
kalali committed rMITKddd8db08e2bc: Extend semantic relations functions (authored by kalali).
Extend semantic relations functions
Apr 26 2019, 7:52 PM
kalali committed rMITKc5b320323fbe: First approach for mask volume computation (authored by kalali).
First approach for mask volume computation
Apr 26 2019, 7:52 PM
kalali committed rMITK0c882afdc8de: Add model-view classes for statistics tree (authored by kalali).
Add model-view classes for statistics tree
Apr 26 2019, 7:52 PM
kalali committed rMITK605229d139d8: Simplify and remove update functions (authored by kalali).
Simplify and remove update functions
Apr 26 2019, 7:52 PM
kalali committed rMITKa6da3290eca4: Merge branch 'T25294-Suggest-last-added-segmentation' into T22946-Integration… (authored by kalali).
Merge branch 'T25294-Suggest-last-added-segmentation' into T22946-Integration…
Apr 26 2019, 7:52 PM
kalali committed rMITKd5d58b01ced6: Remove empty destructors (authored by kalali).
Remove empty destructors
Apr 26 2019, 7:51 PM
aguilera added a comment to T23624: Connection to Epiphan frame grabber via OpenCV is buggy.

It can be integrated and used in a plugin when the frmgrab.dll and frmgrab.lib files were in the same folder (\Epiphan\epiphan_sdk-3.30.3.0007\epiphan\frmgrab\lib\win\x64)

Apr 26 2019, 6:58 PM · IMSY, IGT, Restricted Project, MITK
aguilera committed rMITKbf9f60aaecb0: integrate epiphan sdk (authored by aguilera).
integrate epiphan sdk
Apr 26 2019, 6:54 PM
kalali added a comment to T19683: "Show only selected node" changes the visibility of crosshair.

Would be good to leave the baseRenderer as an argument so that you can set the visibility of a specific node in a predefined base renderer (e.g. by using the RenderWindowManager). This is useful when using the new MultiWidget(Editor).

Apr 26 2019, 5:43 PM · Bugzilla, Pull Request, MITK
sridhara committed rMITK4852723b0d17: heatmap-initial (authored by sridhara).
heatmap-initial
Apr 26 2019, 5:25 PM
kausch committed rMITKa053812bd925: Merge branch 'T19683-ShowOnlySelectedNodesCrosshairVisibility' (authored by kausch).
Merge branch 'T19683-ShowOnlySelectedNodesCrosshairVisibility'
Apr 26 2019, 5:13 PM
kausch committed rMITK01b8d7b66f72: Crosshair always stays visible if you choose show selected nodes (authored by kausch).
Crosshair always stays visible if you choose show selected nodes
Apr 26 2019, 3:52 PM
kausch added a comment to T19683: "Show only selected node" changes the visibility of crosshair.

Pushed new branch T19683-ShowOnlySelectedNodesCrosshairVisibility.

Apr 26 2019, 3:52 PM · Bugzilla, Pull Request, MITK
zimmerer closed T25470: Export as csv for experiment browser overview as Resolved.
Apr 26 2019, 3:11 PM · trixi
floca added a comment to T26029: [image statistics plugin] 4D image + 4D segmentation as mask does not work.

I have concerns with the latest commit. See comments there. You can come by and ask if you have any questions.

Apr 26 2019, 1:18 PM · Restricted Project, MITK
floca raised a concern with rMITK750daa0b6d2b: Fixed crash for single time step segmentations.

The fix is not good and has several problems. See comment above. If it is not clear how to handle it properly, just drop by an I can explaine.

Apr 26 2019, 1:18 PM
petersej closed T23470: Markdown for Python Example Project as Resolved.

No longer relevant

Apr 26 2019, 11:44 AM · MITK
kausch committed rMITK750daa0b6d2b: Fixed crash for single time step segmentations (authored by kausch).
Fixed crash for single time step segmentations
Apr 26 2019, 11:40 AM
kausch added a comment to T26029: [image statistics plugin] 4D image + 4D segmentation as mask does not work.

Solution: GetStatisticsForTimeStep method now returns an empty StatisticsObject if no mask is provided for this time step. Thus, histogram and table are empty for those time steps.
Discussion: 1. 4D image + 3D segmentation

  1. 4D image (5 time steps) + 4D segmentation (1 time step)

@hentsch Is the one time step segmentation applied to all time steps? What is the expected behavior?

Apr 26 2019, 11:39 AM · Restricted Project, MITK
petersej closed T26183: Joint running and testing of experiments as Resolved.

There is a setup option for .run_test, just set that to False

Apr 26 2019, 11:37 AM · trixi
kislinsk triaged T26294: Should we move DICOMPropertyPath helper to Core as Wishlist priority.
Apr 26 2019, 11:20 AM · MITK (v2024.06), DICOM
floca moved T26294: Should we move DICOMPropertyPath helper to Core from Backlog to MITK Meeting on the Request for Discussion board.
Apr 26 2019, 10:29 AM · MITK (v2024.06), DICOM
floca created T26294: Should we move DICOMPropertyPath helper to Core.
Apr 26 2019, 10:28 AM · MITK (v2024.06), DICOM
kausch committed rMITK3d5ca7a31524: Error not reproducable with 3D+t-Heart (authored by kausch).
Error not reproducable with 3D+t-Heart
Apr 26 2019, 10:28 AM
kausch added a comment to T26029: [image statistics plugin] 4D image + 4D segmentation as mask does not work.

Pushed new branch T26029-4DImageAnd4DSegmentation.

Apr 26 2019, 10:15 AM · Restricted Project, MITK
floca moved T25496: Visualize RTDOSE correctly from Backlog to MITK Meeting on the Request for Discussion board.
Apr 26 2019, 9:54 AM · MITK
ervaibhavkumar triaged T26292: Issue while building MITK tag v2018..04.2 with Python support as High priority.
Apr 26 2019, 8:24 AM · MITK (2018-04-2)

Apr 25 2019

kislinsk created petersej.
Apr 25 2019, 3:49 PM
ervaibhavkumar created T26292: Issue while building MITK tag v2018..04.2 with Python support.
Apr 25 2019, 11:07 AM · MITK (2018-04-2)

Apr 24 2019

floca committed rMITK7ef1b6556231: Fixed T26287 (authored by floca).
Fixed T26287
Apr 24 2019, 3:47 PM
floca closed T26287: MRI Perfusion crashes (sometimes) when using signal to concentration conversion as Resolved by committing rMITK7ef1b6556231: Fixed T26287.
Apr 24 2019, 3:47 PM · MITK
floca updated subscribers of T26289: MatchPoint causes warnings during SuperBuild.

@kislinsk Stefan, you said you reworked this pragma for MITK? Does it implie any changes for 3rd party projects?

Apr 24 2019, 1:31 PM · MITK, MatchPoint
floca closed T23808: Add Rule base class for DICOM source imagereferences, a subtask of T23754: DataStorage/Relationship clean up/refactoring, as Resolved.
Apr 24 2019, 1:29 PM · MITK
floca closed T23808: Add Rule base class for DICOM source imagereferences as Resolved.
Apr 24 2019, 1:29 PM · MITK
floca committed rMITKa36581e59950: First implementation of ImageToImageRelationRule (authored by floca).
First implementation of ImageToImageRelationRule
Apr 24 2019, 12:59 PM
floca committed rMITKb7c916ea357f: Fixed review issues D195 (authored by floca).
Fixed review issues D195
Apr 24 2019, 10:31 AM
steint added a comment to rMITK0d470ff3225f: Load micro services successfully.

Please do not merge these MITK_INFOs in the REST moduels into the master. Currently, they can be considered noise. We can discuss a few more MITK_INFOs but then with more actual information.

Apr 24 2019, 9:22 AM
kislinsk added a comment to rMITK0d470ff3225f: Load micro services successfully.

Please do not merge these MITK_INFOs in the REST moduels into the master. Currently, they can be considered noise. We can discuss a few more MITK_INFOs but then with more actual information.

Apr 24 2019, 9:20 AM
steint committed rMITK0d470ff3225f: Load micro services successfully (authored by steint).
Load micro services successfully
Apr 24 2019, 8:33 AM

Apr 23 2019

neher committed rMITKb3f7dc19d888: Adapt default value (authored by neher).
Adapt default value
Apr 23 2019, 3:44 PM
neher committed rMITK34a75a9ad325: Fiber cutting (authored by neher).
Fiber cutting
Apr 23 2019, 2:39 PM
kalali committed rMITK6100739c8144: Store last added segmentation node and use it as a suggestion for a newly added… (authored by kalali).
Store last added segmentation node and use it as a suggestion for a newly added…
Apr 23 2019, 1:15 PM
kalali committed rMITKe29e504d7aae: Merge branch 'T25294-Link-to-new-segmentations' into T22946-Integration-beta (authored by kalali).
Merge branch 'T25294-Link-to-new-segmentations' into T22946-Integration-beta
Apr 23 2019, 1:15 PM
kalali committed rMITKd60724be3480: Automatically add / remove corresponding images / segmentations (authored by kalali).
Automatically add / remove corresponding images / segmentations
Apr 23 2019, 1:15 PM
sattler committed rMITK81dcb6329d48: Merge branch 'T26060-MITK-PhotoacousticsBFToolIPPAI' (authored by sattler).
Merge branch 'T26060-MITK-PhotoacousticsBFToolIPPAI'
Apr 23 2019, 12:48 PM
sattler committed rMITK7d1fb8c46a57: changed the xml structure for the PABeamformingTool (authored by sattler).
changed the xml structure for the PABeamformingTool
Apr 23 2019, 12:47 PM
sattler added a comment to T26060: Command-line interface for PhotoacousticsAlgorithms.

Pushed new branch T26060-MITK-PhotoacousticsBFToolIPPAI.

Apr 23 2019, 12:47 PM · MITK, Photoacoustics

Apr 22 2019

kalali committed rMITKc08254ed1b89: Merge branch 'T25294-Lesion-info-without-statistics' into T22946-Integration… (authored by kalali).
Merge branch 'T25294-Lesion-info-without-statistics' into T22946-Integration…
Apr 22 2019, 7:28 PM
kalali committed rMITK12659c55757b: Add segmentation (and image) if linked to lesion (authored by kalali).
Add segmentation (and image) if linked to lesion
Apr 22 2019, 7:28 PM
kalali committed rMITK3df03bc34e6f: Temporarily remove the second lesion tree item that shows example volume (authored by kalali).
Temporarily remove the second lesion tree item that shows example volume
Apr 22 2019, 6:48 PM
kalali committed rMITK7bb446f0c8c8: Merge branch 'T25294-Lesion-navigation' into T22946-Integration-beta (authored by kalali).
Merge branch 'T25294-Lesion-navigation' into T22946-Integration-beta
Apr 22 2019, 6:48 PM
kalali committed rMITKba5120b56a1d: Add action to focus on lesions / segmentations (authored by kalali).
Add action to focus on lesions / segmentations
Apr 22 2019, 4:50 PM
kalali committed rMITK1c2e27cde308: Add action to show an image with its segmentations in a specified render window (authored by kalali).
Add action to show an image with its segmentations in a specified render window
Apr 22 2019, 4:49 PM
kalali committed rMITKd6ead33f079e: Merge remote-tracking branch 'origin/T25688-Integration' into T22946… (authored by kalali).
Merge remote-tracking branch 'origin/T25688-Integration' into T22946…
Apr 22 2019, 4:49 PM
kalali committed rMITKa2dc808954e0: Fix 'OpenIn' action (authored by kalali).
Fix 'OpenIn' action
Apr 22 2019, 4:49 PM
kalali committed rMITK0ec1170ecf38: Override IRenderWindowPartListener member functions to get informed about a new… (authored by kalali).
Override IRenderWindowPartListener member functions to get informed about a new…
Apr 22 2019, 4:49 PM
kalali triaged T26289: MatchPoint causes warnings during SuperBuild as Normal priority.
Apr 22 2019, 2:55 PM · MITK, MatchPoint
kalali created T26289: MatchPoint causes warnings during SuperBuild.
Apr 22 2019, 2:55 PM · MITK, MatchPoint

Apr 20 2019

neher committed rMITKda3906ce2fda: Catching zero fibers (authored by neher).
Catching zero fibers
Apr 20 2019, 12:28 PM
neher committed rMITK801d55171ea9: Filter zero (authored by neher).
Filter zero
Apr 20 2019, 12:03 PM

Apr 18 2019

floca renamed T26288: MRI Perfusion view should only generate concentration images once from MRI Perfusion view should only generate concentration once to MRI Perfusion view should only generate concentration images once.
Apr 18 2019, 7:09 PM · MITK (v2024.06), Cleared
floca renamed T26288: MRI Perfusion view should only generate concentration images once from MRI Perfusion view should only generare concentration once to MRI Perfusion view should only generate concentration once.
Apr 18 2019, 7:09 PM · MITK (v2024.06), Cleared
floca triaged T26288: MRI Perfusion view should only generate concentration images once as Normal priority.
Apr 18 2019, 7:09 PM · MITK (v2024.06), Cleared
floca committed rMITKda7a438dda21: Fixed T26287 (authored by floca).
Fixed T26287
Apr 18 2019, 7:05 PM
floca committed rMITK892967f97029: Starting fix (authored by floca).
Starting fix
Apr 18 2019, 6:51 PM
floca added a comment to T26287: MRI Perfusion crashes (sometimes) when using signal to concentration conversion.

Pushed new branch T26287-Perfusion_crash_when_converting_signal.

Apr 18 2019, 6:50 PM · MITK
floca added a comment to T26287: MRI Perfusion crashes (sometimes) when using signal to concentration conversion.

It seems to beeing correlated with the addition of the generated concentration node to the data storage. If the nodes are not added to the datastorage, I cannot provoke a crash. This is at least concistent to the finding that there is also no proplem if we calculate the concentration beforehand.

Apr 18 2019, 4:56 PM · MITK
floca added a comment to T26287: MRI Perfusion crashes (sometimes) when using signal to concentration conversion.

Narrowed down the point where it crashes.

Apr 18 2019, 4:49 PM · MITK
floca triaged T26287: MRI Perfusion crashes (sometimes) when using signal to concentration conversion as High priority.
Apr 18 2019, 4:40 PM · MITK
floca committed rMITK3367c0e0bbce: Merge branch 'T26265-Connect_error_multinodeselectionwidget' (authored by floca).
Merge branch 'T26265-Connect_error_multinodeselectionwidget'
Apr 18 2019, 4:26 PM
floca closed T26265: Warning in QmitkMultiNodeSelectionWidget as Resolved by committing rMITKbf7b24f189d4: Fixed T26265.
Apr 18 2019, 4:26 PM · MITK
neher committed rMITK64446163f12c: All new fit (authored by neher).
All new fit
Apr 18 2019, 3:10 PM
neher committed rMITK550e6206efe9: Normalizing system (authored by neher).
Normalizing system
Apr 18 2019, 3:07 PM
neher added a comment to T26285: [MITK Diffusion] Fiber fitting regularization.

Pushed new branch T26285-FitRegu.

Apr 18 2019, 3:07 PM · MITK
neher triaged T26285: [MITK Diffusion] Fiber fitting regularization as Normal priority.
Apr 18 2019, 3:04 PM · MITK
neher closed T26282: [MITK Diffusion] Missing icons as Resolved.
Apr 18 2019, 3:03 PM · MITK
neher committed rMITK1c7ee2a648a4: Merge branch 'T26282-Icons' (authored by neher).
Merge branch 'T26282-Icons'
Apr 18 2019, 2:33 PM
neher committed rMITK8b2397400371: Fix icons. Apparently only png is working. (authored by neher).
Fix icons. Apparently only png is working.
Apr 18 2019, 2:32 PM
sattler committed rMITK945f8520090c: Merge branch 'T26060-MITK-PhotoacousticsBFTool' (authored by sattler).
Merge branch 'T26060-MITK-PhotoacousticsBFTool'
Apr 18 2019, 1:10 PM
sattler committed rMITK3bb44cff5aa2: fixes over fixes (authored by sattler).
fixes over fixes
Apr 18 2019, 1:09 PM
steint committed rMITKf69e4e3760ac: Refactor segmentation rework plugin to work with new rest module (authored by steint).
Refactor segmentation rework plugin to work with new rest module
Apr 18 2019, 1:05 PM
steint committed rMITK2a9d546cf99e: Add plugin config. (authored by steint).
Add plugin config.
Apr 18 2019, 1:05 PM
steint committed rMITK22929f3df56f: Merge remote-tracking branch 'origin' into T25025-seg-rework-plugin (authored by steint).
Merge remote-tracking branch 'origin' into T25025-seg-rework-plugin
Apr 18 2019, 1:05 PM
neher committed rMITKfc363974d833: Distance as parameter (authored by neher).
Distance as parameter
Apr 18 2019, 11:25 AM
neher committed rMITKeb01007be3ca: wip (authored by neher).
wip
Apr 18 2019, 11:19 AM
neher committed rMITK43cb3e342755: Setting cmake file and qrc resources correctly (authored by neher).
Setting cmake file and qrc resources correctly
Apr 18 2019, 11:19 AM
neher added a comment to T26282: [MITK Diffusion] Missing icons.

Pushed new branch T26282-Icons.

Apr 18 2019, 11:18 AM · MITK
floca committed rMITKbf7b24f189d4: Fixed T26265 (authored by floca).
Fixed T26265
Apr 18 2019, 10:36 AM
floca added a comment to T26265: Warning in QmitkMultiNodeSelectionWidget.

Pushed new branch T26265-Connect_error_multinodeselectionwidget.

Apr 18 2019, 10:35 AM · MITK

Apr 17 2019

seitela committed rMITK0e14c9aee6f1: Added matching of annotated point set to phantom geometry (authored by seitela).
Added matching of annotated point set to phantom geometry
Apr 17 2019, 2:46 PM
kalali moved T25601: Modernize render window manager from Restricted Project Column to Restricted Project Column on the Restricted Project board.
Apr 17 2019, 10:36 AM · Restricted Project, MITK
kalali placed T23758: Introduction of custom multi widget editor up for grabs.
Apr 17 2019, 10:35 AM · Restricted Project, MITK
floca committed rMP471e4259e51f: Fixed T26284 (authored by floca).
Fixed T26284
Apr 17 2019, 9:07 AM
floca changed the visibility for MatchPoint.
Apr 17 2019, 8:59 AM

Apr 16 2019

kalali closed T25688: Render window manager with custom multi widget: beta version as Resolved.
Apr 16 2019, 1:38 PM · Noteworthy, Restricted Project, MITK
kalali closed T25688: Render window manager with custom multi widget: beta version, a subtask of T25601: Modernize render window manager, as Resolved.
Apr 16 2019, 1:38 PM · Restricted Project, MITK
kalali added a comment to T23758: Introduction of custom multi widget editor.

Merged this by merging the reviewed branch D175.
Known problems:
Some plugins try to get specific render windows (axial, sagittal, coronal) and immediately using an operation on that render window without checking if this render window is != nullptr. With the new multi widget editor these specific render windows might not be available and thus the call GetQmitkRenderWindow("axial") returns a nullptr (see also T25595 and T26376).

Apr 16 2019, 1:38 PM · Restricted Project, MITK
neher triaged T26282: [MITK Diffusion] Missing icons as Normal priority.
Apr 16 2019, 1:20 PM · MITK
neher closed T25779: [MITK Diffusion] Streamline tractography parameter files as Resolved.
Apr 16 2019, 1:19 PM · MITK