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May 2 2019

sattler committed rMITKf5d6ac157021: Merge branch 'T26060-AddBandpass' (authored by sattler).
Merge branch 'T26060-AddBandpass'
May 2 2019, 5:41 PM
sattler committed rMITK5e4570f3fbb9: added the ability to run a bandpass on the images (authored by sattler).
added the ability to run a bandpass on the images
May 2 2019, 5:40 PM
sattler added a comment to T26060: Command-line interface for PhotoacousticsAlgorithms.

Pushed new branch T26060-AddBandpass.

May 2 2019, 5:40 PM · MITK, Photoacoustics
steint committed rMITKf9fc0ca12847: Extend SendRequest in module to allow byte arrays to be sent with put. Add stow… (authored by steint).
Extend SendRequest in module to allow byte arrays to be sent with put. Add stow…
May 2 2019, 5:23 PM
sattler committed rMITKc0a9d3941ef0: Merge branch 'T26311-temporaryFix' (authored by sattler).
Merge branch 'T26311-temporaryFix'
May 2 2019, 4:12 PM
floca committed rMITK105369df51ca: Fixed layout stretch to ensure that the chart always covers the blank space. (authored by floca).
Fixed layout stretch to ensure that the chart always covers the blank space.
May 2 2019, 3:27 PM
floca committed rMPf2a64255250e: Closed T26313 (authored by floca).
Closed T26313
May 2 2019, 2:32 PM
floca committed rMP1ddd054712c2: Changed problematic clang tidy change. (authored by floca).
Changed problematic clang tidy change.
May 2 2019, 2:06 PM
steint committed rMITK288ea201758d: Fix some linux bugs. (authored by steint).
Fix some linux bugs.
May 2 2019, 1:30 PM
kausch added a comment to rMITK750daa0b6d2b: Fixed crash for single time step segmentations.

There seems to be another exception thrown when willing the table view. The statistics table is not filled. The idea is now not to change the GetStatisticsForTimeStep functionality but handle the exception in the level above (like we started before with the try-catch)

May 2 2019, 1:28 PM
floca added a comment to T23104: Deprecate QmitkPlotWidget.

@hentsch / @kislinsk : Shouldn't we already set QmitkPlotDialog/QmitkPlotWidget/QtHistogram to deprecated then. To give us sooner then later the posibilite to realy remove the code from the codebase. If I see it correctly, that would also gives us the possibility to reomive Qwt as a third party package from MITK. What do you think?

May 2 2019, 1:28 PM · Restricted Project, MITK
kleina committed rMITK5947066faddd: Bone segmantation using CNN in MITK. First try... (authored by kleina).
Bone segmantation using CNN in MITK. First try...
May 2 2019, 1:27 PM
kalali committed rMITK4f08aea29b78: Revert latest update of the MatchPoint third party file (authored by kalali).
Revert latest update of the MatchPoint third party file
May 2 2019, 12:11 PM
kalali committed rMITKeeace5c321bd: Revert latest update of the MatchPoint third party file (authored by kalali).
Revert latest update of the MatchPoint third party file
May 2 2019, 12:11 PM
kalali added inline comments to rMITK750daa0b6d2b: Fixed crash for single time step segmentations.
May 2 2019, 12:10 PM
kalali added a revision to T26270: Update MatchPoint third party file: Unknown Object (Differential Revision).
May 2 2019, 11:24 AM · MITK

May 1 2019

ervaibhavkumar updated subscribers of T26292: Issue while building MITK tag v2018..04.2 with Python support.

@kislinsk Do you have any opinion regarding this issue ?

May 1 2019, 12:31 PM · MITK (2018-04-2)

Apr 30 2019

kislinsk added a comment to T26237: Improve performance for interactions in 2d widgets.

I also checked on my notebook from 2011 with a GeForce 540M and I have similar framerates compared to @maleike. I also checked all the different GPU load indicators with GPU-Z and messing around in the 2d views does not trigger such an old GPU to even yawn. CPU is also not sweating so I guess it could be something related to memory access or transfer.

Apr 30 2019, 9:18 PM · MITK
sattler committed rMITK4da002f4a2fa: temporary fix by setting the batch size higher (authored by sattler).
temporary fix by setting the batch size higher
Apr 30 2019, 6:46 PM
sattler added a comment to T26311: Beamforming GPU memory allocation unstable.

Pushed new branch T26311-temporaryFix.

Apr 30 2019, 6:46 PM · MITK, Photoacoustics
sattler triaged T26311: Beamforming GPU memory allocation unstable as Normal priority.
Apr 30 2019, 6:41 PM · MITK, Photoacoustics
wegner added a comment to T26237: Improve performance for interactions in 2d widgets.

Apr 30 2019, 6:14 PM · MITK
wegner added a comment to T26237: Improve performance for interactions in 2d widgets.

Hi,
after updating my graphics card driver to the newest available (430.39) the issue still exists. I will check on VTK side next and see if it is related to it.
Thanks,
Ingmar

Apr 30 2019, 6:07 PM · MITK
petersej added a watcher for petersej: petersej.
Apr 30 2019, 5:56 PM
steint committed rMITK86b83c4d4ae5: Fix macro in module (linux) Refactoring (authored by steint).
Fix macro in module (linux) Refactoring
Apr 30 2019, 4:47 PM
s635r committed rOBSHYPPOPY6ad1befb493d: sphinx copy license and readme bugfix, .gitignore update (authored by s635r).
sphinx copy license and readme bugfix, .gitignore update
Apr 30 2019, 4:01 PM
s635r committed rOBSHYPPOPY3c17ad8a3c63: sphinx doc added (authored by s635r).
sphinx doc added
Apr 30 2019, 4:01 PM
kalali committed rMITK0bfb16968973: Add comments and clean classes (authored by kalali).
Add comments and clean classes
Apr 30 2019, 2:29 PM
kalali committed rMITK9344fadd0e8b: Compute statistics with the help of the image statistics ui module. (authored by kalali).
Compute statistics with the help of the image statistics ui module.
Apr 30 2019, 2:29 PM
kalali committed rMITKda01cc8a8c3c: Remove lesion volume computation from the lesion manager (authored by kalali).
Remove lesion volume computation from the lesion manager
Apr 30 2019, 2:29 PM
s635r closed T25982: add all hp space modalities loguniform, ... as Invalid.
Apr 30 2019, 2:28 PM · Hyppopy
s635r closed T26096: Add groups to hyperparameter dict structure as Resolved.
Apr 30 2019, 2:27 PM · Hyppopy
reicht added a comment to T26306: Identify a web-framework to operate a Server.

Keep in mind:

Apr 30 2019, 2:27 PM · CSI-HD
kalali added a revision to T26270: Update MatchPoint third party file: Unknown Object (Differential Revision).
Apr 30 2019, 2:26 PM · MITK
kalali committed rMITK91cded52abe4: Revert latest changes (authored by kalali).
Revert latest changes
Apr 30 2019, 2:26 PM
s635r committed rOBSHYPPOPYb25a50421e4e: Resolved Issue T26240 (authored by s635r).
Resolved Issue T26240
Apr 30 2019, 2:24 PM
s635r closed T26086: Fix hard coded paths as Resolved.
Apr 30 2019, 2:23 PM · Hyppopy
s635r closed T26146: restructure gridsearch to be memory safe as Resolved.
Apr 30 2019, 2:23 PM · Hyppopy
s635r closed T26240: File headers are "strange" as Resolved.
Apr 30 2019, 2:22 PM · Hyppopy
kalali reopened T26270: Update MatchPoint third party file as "Open".

Reopened to revert the latest changed due to errors.

Apr 30 2019, 2:20 PM · MITK
s635r closed T26242: Solvers exceptions due to missing hyper parameter configs should be more telling. as Resolved.
Apr 30 2019, 2:14 PM · Hyppopy
s635r closed T26148: Integrate virtual energy function for evaluations tasks as Resolved.
Apr 30 2019, 2:13 PM · Hyppopy
steint committed rMITK7051024bb972: Add documentation for rest module (authored by steint).
Add documentation for rest module
Apr 30 2019, 2:01 PM
maleike added a comment to T26237: Improve performance for interactions in 2d widgets.

@maleike NV210? According to google this GPU was released in 2003.

Apr 30 2019, 1:57 PM · MITK
kalali closed T26270: Update MatchPoint third party file as Resolved.
Apr 30 2019, 1:41 PM · MITK
steint committed rMITKa5ee5b4cb9fb: Code cleanup (authored by steint).
Code cleanup
Apr 30 2019, 1:39 PM
steint committed rMITK8781b2cd21fd: Remove outputs from module and fix path in plugin (authored by steint).
Remove outputs from module and fix path in plugin
Apr 30 2019, 1:39 PM
kalali committed rMITKa9b9c6c7d295: Remove local url (authored by kalali).
Remove local url
Apr 30 2019, 1:37 PM
kalali committed rMITK94f0e04f81db: Update MatchPoint third party file to include recent changes and bug fixes. (authored by kalali).
Update MatchPoint third party file to include recent changes and bug fixes.
Apr 30 2019, 1:37 PM
kalali committed rMITKab3fbc95cffd: Update MatchPoint third party file to include recent changes and bug fixes. (authored by kalali).
Update MatchPoint third party file to include recent changes and bug fixes.
Apr 30 2019, 1:37 PM
reicht renamed T26299: [Webbased DICOM parsing and file handling] from [Webbased DICOM parsing and transfer] to [Webbased DICOM parsing and file handling].
Apr 30 2019, 1:30 PM · CSI-HD
reicht assigned T26299: [Webbased DICOM parsing and file handling] to d485r.
Apr 30 2019, 1:28 PM · CSI-HD
reicht moved T26299: [Webbased DICOM parsing and file handling] from RM ToDo to DKFZ ToDo on the CSI-HD board.
Apr 30 2019, 1:27 PM · CSI-HD
reicht moved T26301: Browserbased parsing and identification of DICOM files from RM ToDo to DKFZ ToDo on the CSI-HD board.
Apr 30 2019, 1:27 PM · CSI-HD
reicht moved T26306: Identify a web-framework to operate a Server from RM ToDo to DKFZ ToDo on the CSI-HD board.
Apr 30 2019, 1:27 PM · CSI-HD
reicht moved T26307: Identify a proper Transfer technology from RM ToDo to DKFZ ToDo on the CSI-HD board.
Apr 30 2019, 1:27 PM · CSI-HD
reicht moved T26308: Encrypt tranfers from RM ToDo to DKFZ ToDo on the CSI-HD board.
Apr 30 2019, 1:26 PM · CSI-HD
reicht created T26308: Encrypt tranfers.
Apr 30 2019, 1:26 PM · CSI-HD
reicht created T26307: Identify a proper Transfer technology.
Apr 30 2019, 1:25 PM · CSI-HD
reicht created T26306: Identify a web-framework to operate a Server.
Apr 30 2019, 1:24 PM · CSI-HD
reicht removed a subtask for T26301: Browserbased parsing and identification of DICOM files: Unknown Object (Maniphest Task).
Apr 30 2019, 1:16 PM · CSI-HD
reicht created T26301: Browserbased parsing and identification of DICOM files.
Apr 30 2019, 1:07 PM · CSI-HD
reicht added a subtask for T26299: [Webbased DICOM parsing and file handling]: Unknown Object (Maniphest Task).
Apr 30 2019, 1:04 PM · CSI-HD
reicht created T26299: [Webbased DICOM parsing and file handling].
Apr 30 2019, 1:04 PM · CSI-HD
kislinsk added a comment to T26237: Improve performance for interactions in 2d widgets.

@maleike NV210? According to google this GPU was released in 2003. I'm surprised that you can see anything at all as OpenGL 3.x was released between 2008 and 2010. As you guys have quite powerful CPUs and lots of RAM I guess you have rather recent workstations except the GPUs. Is there a specific reason to stick with such old GPUs? No offense here, it's just noticable. You get a HUGE performance boost even with a silent low-end GTX 1050 without extra power supply for around 140 €.

Apr 30 2019, 1:03 PM · MITK
kislinsk added a comment to T26237: Improve performance for interactions in 2d widgets.

@wegner It's the Nvidia screen recording which comes right with the driver resp. GeForce Experience application and utilizes the GPU directy to record the screen content. Not sure if it works with a 2012 GPU, though.

Apr 30 2019, 12:53 PM · MITK
kislinsk added a comment to T26237: Improve performance for interactions in 2d widgets.

My bet is on the "new" OpenGL 3.x rendering backend of VTK as we didn't change anything else in this area of MITK in the past years. Especially non-mainstream GPUs from around 2011-2012 are the ones which tend to somehow work but not in a satisfactory way regarding OpenGL 3.x. Unfortunately Nvidia doesn't continue to provide current drivers for GPUs this old as far as I know which would be usually my first advise to check.

Apr 30 2019, 12:50 PM · MITK
maleike added a comment to T26237: Improve performance for interactions in 2d widgets.

(Didn't see latest comments from yesterday evening, was typing the following while only the initial comments of Stefan were visible in my browser)

Apr 30 2019, 12:27 PM · MITK
wegner added a comment to T26237: Improve performance for interactions in 2d widgets.

Wow, that looks nice!
No, that's not what I have seen on my desktop, or a laptop or a Windows virtual machine, that used to work well with the older MITK version (2016.03.0).
I will check on a recording solution (which one did you use?) and do the same on my side...

Apr 30 2019, 11:26 AM · MITK
wegner added a comment to T26237: Improve performance for interactions in 2d widgets.

By the way, the test system was on Windows 7!

Apr 30 2019, 11:22 AM · MITK
kalali added a revision to T26270: Update MatchPoint third party file: Unknown Object (Differential Revision).
Apr 30 2019, 10:34 AM · MITK
kalali committed rMITK0b251023c917: Update new version of MatchPoint (authored by kalali).
Update new version of MatchPoint
Apr 30 2019, 10:30 AM
kislinsk added a comment to T26237: Improve performance for interactions in 2d widgets.

Thanks for measuring! I downloaded the latest zip installer and roughly did what I think you did as well. Recorded at 1080p @ 60 Hz, encoded in 720p (same H/W as mentioned in my last post). I think this is completely different from your experience, right?

Apr 30 2019, 2:42 AM · MITK

Apr 29 2019

wegner added a comment to T26237: Improve performance for interactions in 2d widgets.

Hi,
measurements on my side
mitk v2018.04.2 (zip downloaded from webside) with pic3d.nrrd (106.478KB), a fresh generated binary dataset and with Segmentation Add Tool (NVIDIA Quadro K5000, Full HD resolution, 60Hz refresh rate, three displays connected, Intel Xeon E5-2687w 3,4GHz (2 processors, 32cores in total), 64 GB RAM (I admit, a few years old, but still better than any standard PC ;) )
->measured with fraps
2d widgets: 20 Hz, going down over time
3D widgets: 60Hz, stable over time as no segmentation interaction is going on.

Apr 29 2019, 5:45 PM · MITK
GitHub <noreply@github.com> committed rOBSHYPPOPY8c91964f7cc1: Update README.md (authored by s635r).
Update README.md
Apr 29 2019, 3:32 PM
s635r committed rOBSHYPPOPYb3cb5536ec2e: Solver comparison report added (authored by s635r).
Solver comparison report added
Apr 29 2019, 3:32 PM
s635r committed rOBSHYPPOPYe63835dcb200: report added (authored by s635r).
report added
Apr 29 2019, 3:32 PM
s635r committed rOBSHYPPOPY48559a44a24c: define hyperparameter - solver interface check works, all tests and examples… (authored by s635r).
define hyperparameter - solver interface check works, all tests and examples…
Apr 29 2019, 3:32 PM
s635r committed rOBSHYPPOPYaf915bc03a64: solver children now define their interface using an abstract function and… (authored by s635r).
solver children now define their interface using an abstract function and…
Apr 29 2019, 3:32 PM
s635r committed rOBSHYPPOPY8b826325b6eb: test fixes quasirandomsearch and global default iterations removed (authored by s635r).
test fixes quasirandomsearch and global default iterations removed
Apr 29 2019, 3:32 PM
steint committed rMITK41ab96b0c370: Add DICOMweb.cpp (authored by steint).
Add DICOMweb.cpp
Apr 29 2019, 2:39 PM
steint committed rMITKc7e5ae076b1d: refactor DICOMweb as normal class (authored by steint).
refactor DICOMweb as normal class
Apr 29 2019, 2:39 PM
kislinsk edited projects for T25941: Saving Registered Data in new Coordinate frame, added: MITK; removed MITK (2018-04-4).
Apr 29 2019, 12:51 PM · MITK
floca committed rMITKa0ba9d263118: Merge branch 'T25941-Improve_mapper_view_user_manuel' (authored by floca).
Merge branch 'T25941-Improve_mapper_view_user_manuel'
Apr 29 2019, 10:26 AM
floca committed rMITK4edc1ed9e966: Improved the user manuel of the mapper view (authored by floca).
Improved the user manuel of the mapper view
Apr 29 2019, 10:25 AM
floca added a comment to T25941: Saving Registered Data in new Coordinate frame.

Pushed new branch T25941-Improve_mapper_view_user_manuel.

Apr 29 2019, 10:25 AM · MITK
k656s added a member for Kaapana (internal): kleesiek.
Apr 29 2019, 10:24 AM
floca triaged T25941: Saving Registered Data in new Coordinate frame as Normal priority.

@kislinsk Thanks for the hint.

Apr 29 2019, 10:22 AM · MITK
floca updated the task description for T25988: LabelSetImageIO should support time geometries and property serialization.
Apr 29 2019, 9:42 AM · MITK (v2021.02)
kislinsk edited projects for T25941: Saving Registered Data in new Coordinate frame, added: MITK (2018-04-4); removed MITK.
Apr 29 2019, 6:44 AM · MITK
kislinsk removed a subtask for T25939: DICOM data and Nifti Segmentation don't like each other, 3d+t data: T25988: LabelSetImageIO should support time geometries and property serialization.
Apr 29 2019, 6:33 AM · MITK
kislinsk removed a parent task for T25988: LabelSetImageIO should support time geometries and property serialization: T25939: DICOM data and Nifti Segmentation don't like each other, 3d+t data.
Apr 29 2019, 6:33 AM · MITK (v2021.02)
kislinsk merged T25939: DICOM data and Nifti Segmentation don't like each other, 3d+t data into T25988: LabelSetImageIO should support time geometries and property serialization.
Apr 29 2019, 6:32 AM · MITK (v2021.02)
kislinsk merged task T25939: DICOM data and Nifti Segmentation don't like each other, 3d+t data into T25988: LabelSetImageIO should support time geometries and property serialization.
Apr 29 2019, 6:32 AM · MITK
kislinsk edited projects for T25988: LabelSetImageIO should support time geometries and property serialization, added: MITK (2018-04-4); removed MITK.
Apr 29 2019, 6:32 AM · MITK (v2021.02)
kislinsk triaged T25943: Integrate probe calibration related changes as Normal priority.
Apr 29 2019, 6:26 AM · IMSY, MITK
kislinsk triaged T25981: ModelFit: actualize/fix wiki page as Normal priority.
Apr 29 2019, 6:25 AM · Restricted Project, Restricted Project, MITK
kislinsk triaged T26033: Update ModelFit manual as Normal priority.
Apr 29 2019, 6:25 AM · Restricted Project, MITK
kislinsk triaged T26172: 2D interpolation in MultiLabelSegmentation Editor only works for 1. label as Normal priority.
Apr 29 2019, 6:24 AM · MITK (v2023.04)
kislinsk triaged T26187: Create polygon model works only once as High priority.
Apr 29 2019, 6:22 AM