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Oct 13 2023
Oct 13 2023
a178n committed rMITKeb253d085c61: SAM tool can now handle cuda out of memory situation and throw error message (authored by a178n).
SAM tool can now handle cuda out of memory situation and throw error message
a178n committed rMITK198eb50374b6: Moving GPU selection into MITK Preferences from SAM tool UI (authored by a178n).
Moving GPU selection into MITK Preferences from SAM tool UI
GPU name parsing bugfix
Adding SAM model selection tip for users
a178n committed rMITK9c581076d539: Adding live status messages from tool class to GUI (authored by a178n).
Adding live status messages from tool class to GUI
SAM Tool: Minor code cleanup
a178n committed rMITKfde7c40a6029: Move SAM tool Preferences to dedicated UI page (authored by a178n).
Move SAM tool Preferences to dedicated UI page
a178n committed rMITK28d42b2f66d4: Update Install: SAM wrapper can be now pip installed (authored by a178n).
Update Install: SAM wrapper can be now pip installed
SAM tool Ubuntu build fixes
a178n committed rMITKcbe41a9e63b4: SAM tool: code updates for better status update on UI (authored by a178n).
SAM tool: code updates for better status update on UI
SAM tool Code clean up
Add doc strings for SAM tool functions
a178n committed rMITKb5aea9d23a3d: SegWithPreviewTool feature update: Adding ConfirmCleanUp virtual function to… (authored by a178n).
SegWithPreviewTool feature update: Adding ConfirmCleanUp virtual function to…
Confirm segmentation works now
Rename SAM to Segment Anything
a178n committed rMITKe1e2e3914c25: Adding Preference change listener to SAM tool (authored by a178n).
Adding Preference change listener to SAM tool
a178n committed rMITKb5659e85568a: SAM tool will now use nrrd file for python interaction. (authored by a178n).
SAM tool will now use nrrd file for python interaction.
Linux/Mac build fixes
a178n committed rMITK370d9a358960: Better GPU vs CPU UX with redundancy for SAM tool (authored by a178n).
Better GPU vs CPU UX with redundancy for SAM tool
SAM tool now supports CPU inferencing
SAMtool: Rename "Activate" to "Initialize"
a178n committed rMITK9709514e5e0c: Force install pytorch v2.0.0 and torchvision 0.15 (authored by a178n).
Force install pytorch v2.0.0 and torchvision 0.15
a178n committed rMITK504cc0a24aad: SAM tool won't show pop when no GPU was found (authored by a178n).
SAM tool won't show pop when no GPU was found
SAM Tool: Better UX changes
Adding support for 2D images
a178n committed rMITKffb81898d5af: Tool API Bugfix: Seg tools in 2D mode can confirm on arbitrary steps correctly (authored by a178n).
Tool API Bugfix: Seg tools in 2D mode can confirm on arbitrary steps correctly
Minor code update for Ubuntu build
a178n committed rMITKe9343bbcfc5a: SAM tool won't download models anymore. Qt5 Network dependency removed (authored by a178n).
SAM tool won't download models anymore. Qt5 Network dependency removed
a178n committed rMITK7c87988922d4: Merge branch 'develop' into feature/T29604-sam-tool-2 (authored by a178n).
Merge branch 'develop' into feature/T29604-sam-tool-2
SAM tool Minor code changes
a178n committed rMITK6efa5580b99e: Bugfix: SAM preference gpu box won't be white anymore (authored by a178n).
Bugfix: SAM preference gpu box won't be white anymore
a178n committed rMITK678147e40e8a: SAM tool now fully support cross hair rotated images : Hashing logic change (authored by a178n).
SAM tool now fully support cross hair rotated images : Hashing logic change
SAM tool: Update hash logic for robustness
a178n committed rMITKe831e8c5a6fe: Levelwindowfilter now applied to images for SAM tool (authored by a178n).
Levelwindowfilter now applied to images for SAM tool
a178n committed rMITKd2b0b156bc2e: Adding optimized ITK-based file writer for SAM tool (authored by a178n).
Adding optimized ITK-based file writer for SAM tool
Ubuntu build fixes
2D RGB image bugfix in SAM tool
SAM tool Code refactoring changes
a178n committed rMITKce918dfa2126: Merge branch 'develop' into feature/T29604-sam-tool-2 (authored by a178n).
Merge branch 'develop' into feature/T29604-sam-tool-2
a178n committed rMITK0b574ff4f211: Avoid deep copy from ITK window filter to MITK image in SAM tool (authored by a178n).
Avoid deep copy from ITK window filter to MITK image in SAM tool
SAM tool will now reinit after timed out
a178n committed rMITK3b1b4dfa6d88: SAM tool: Introducing timeout for python process comms (authored by a178n).
SAM tool: Introducing timeout for python process comms
Improve documentation and null check
Code cleanup
Changing SAM runner git url
Update itkTypeMacro
a178n committed rMITKebc6c339724f: Merge branch 'develop' into feature/T29604-sam-tool-2 (authored by a178n).
Merge branch 'develop' into feature/T29604-sam-tool-2
a178n committed rMITKfda96a0189cd: Adding locale switch to writer for consistency (authored by a178n).
Adding locale switch to writer for consistency
Segment Anything Tool
a178n added a revision to T30215: [SEG] Support TotalSegmentatorV2: Unknown Object (Differential Revision).
Oct 12 2023
Oct 12 2023
s434n moved T29302: Movie maker plugin does not work correctly with the new mxn multi widget from Cycle to Backlog on the MITK (v2023.12) board.
s434n moved T29509: [mxn multi widget] Clicking a render window utility toolbar does not change focus from Cycle to Backlog on the MITK (v2023.12) board.
s434n placed T29302: Movie maker plugin does not work correctly with the new mxn multi widget up for grabs.
s434n placed T29509: [mxn multi widget] Clicking a render window utility toolbar does not change focus up for grabs.
I looked shortly into this, but couldn't find an easy way to solve it. The problem is that for the desired behavior, one needs to capture not only events of the utility widget itself, but also of all its child widgets.
kompan committed rMITK112ad07eaa33: Remove all components of the Numeric Two Tissue Compartment Model from the… (authored by kompan).
Remove all components of the Numeric Two Tissue Compartment Model from the…
Remove numeric PK models.
kompan committed rMITKab20c8d460b2: Remove all components of the numeric 2CXM from the Pharmacokinetics module. (authored by kompan).
Remove all components of the numeric 2CXM from the Pharmacokinetics module.
kompan committed rMITK2575839f4cb6: Remove 2CXM from Perfusion Data Simulation View. (authored by kompan).
Remove 2CXM from Perfusion Data Simulation View.
kompan committed rMITK2cd392cafc70: Remove numeric Two Tissue Compartment Model from PET Dynamic View (authored by kompan).
Remove numeric Two Tissue Compartment Model from PET Dynamic View
kompan committed rMITKfa633e22b90c: Remove numerical 2CXM from MR Perfusion View. (authored by kompan).
Remove numerical 2CXM from MR Perfusion View.
Oct 11 2023
Oct 11 2023
floca added a revision to T27718: Miniapp for basic DICOM testing: Unknown Object (Differential Revision).
s434n moved T30222: [Registration] Enable use of parameters for command line MiniApp from Backlog to Cycle on the MITK (v2023.12) board.
floca added a project to T29639: [Registration] Mapping crashes when super-sampling is activated: Missing Info.
Not clear when and how it happens. Need to narrow it down more.
floca added a project to T29098: [3D Segmentation] UL Threshold Tool - 0 intensity value not include in slider range?: Restricted Project.
floca lowered the priority of T29130: [WorkBench] Segmentation fault when "Close Project" is invoked and QmitkDataStorageComboBox widget is in UI from Unbreak Now! to Normal.
This task can be potentially closed after T30149 is handled (that one should be done first).
floca edited projects for T27413: MITK Workflow Q&A, added: Request for Discussion, MITK; removed MITK (v2023.12).
floca moved T29454: Clarify the versions/editions we publish as installer from Backlog to Cycle on the MITK (v2023.12) board.
floca triaged T30164: [Segmentation] [Bug] 2D RGB image not correctly handled by SegPreviewTool API tool as Normal priority.
kislinsk lowered the priority of T30180: [Statistics] Median is approximated and completely off if sample size is small from Unbreak Now! to High.
Discussion result: Should be fixed with an exact calculation instead of an approximation based on histogram.
floca lowered the priority of T30158: [DCM][SEG] Check why unittests did not detect breaking support of DCM Seg and fix the (unit) test from Unbreak Now! to High.
s434n triaged T30222: [Registration] Enable use of parameters for command line MiniApp as Normal priority.
floca moved T29597: TotalSeg didn't remember python environment from Segmentation to Cycle on the MITK (v2023.12) board.
floca moved T29302: Movie maker plugin does not work correctly with the new mxn multi widget from Backlog to Cycle on the MITK (v2023.12) board.
floca moved T29295: MONAI Label App as auto-segmentation tool in MITK from Backlog to Cycle on the MITK (v2023.12) board.
floca moved T29651: [Preferences] SAM tool Preferences not rendered nicely on MacOS from Backlog to Cycle on the MITK (v2023.12) board.
s434n moved T30184: [MxN] Turning on data synchronizing hides newly added nodes from Backlog to Cycle on the MITK (v2023.12) board.
s434n moved T30192: [MxN] UI elements not visible on Mac from Backlog to Cycle on the MITK (v2023.12) board.
Yes, that was it. Works now!
most likely it is due to wrong locales in the out stream operation on your OS. You have ',' in your file where '.' should be.