ITK's Eigen interferes with our separate external dependency, so I will remove our own and change the dependencies to ITK's Eigen, which is just fine regarding its version.
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Jun 3 2024
Jun 3 2024
Pushed new branch to rMITK MITK: bugfix/T30456-UpgradeITK.
I fixed MatchPoint with rMP6a425290639f: Merge branch 'T30456-FixWrongClassNameInITKMacro'.
kislinsk committed rMP6a425290639f: Merge branch 'T30456-FixWrongClassNameInITKMacro' (authored by kislinsk).
Merge branch 'T30456-FixWrongClassNameInITKMacro'
kislinsk committed rMP484d2cd7348a: Fix class name in itkTypeMacro for ServiceStack (authored by kislinsk).
Fix class name in itkTypeMacro for ServiceStack
a178n committed rMITK4b761dd7fe36: Adding check for venv module in user selected python (authored by a178n).
Adding check for venv module in user selected python
Minor refactoring changes
a178n committed rMITK18cc073f3408: Check for venv module while installing AI tools (authored by a178n).
Check for venv module while installing AI tools
May 28 2024
May 28 2024
s434n closed T30449: [MxN] Setting data-based layout does not update visibility as Resolved by committing rMITK27cb841051cb: Ensure visibility in data based layout.
Ensure visibility in data based layout
ensure visibility in data based layout
s434n committed rMITKbd96f7e1b32c: Disable threshold tools updating after each entered digit (authored by s434n).
Disable threshold tools updating after each entered digit
s434n committed rMITKed6544ece9de: disable keyboardTracking for spinboxes inside ctk slider widgets (authored by s434n).
disable keyboardTracking for spinboxes inside ctk slider widgets
kislinsk committed rMITK181346d0eddc: Fix buffer overflows in itk::Size instantiations (authored by kislinsk).
Fix buffer overflows in itk::Size instantiations
kislinsk committed rMITK907029671725: Merge branch 'bugfix/T30453-FixBufferOverflow' into develop (authored by kislinsk).
Merge branch 'bugfix/T30453-FixBufferOverflow' into develop
Deleted branch from rMITK MITK: bugfix/T30453-FixBufferOverflow.
May 27 2024
May 27 2024
s434n committed rMITKa54850548977: Fix warning when opening volume visualization (authored by s434n).
Fix warning when opening volume visualization
s434n committed rMITK1d09e3c5870e: remove superfluous rangeslider min max members (authored by s434n).
remove superfluous rangeslider min max members
Pushed new branch to rMITK MITK: bugfix/T30453-FixBufferOverflow.
kislinsk added a revision to T30453: Fix (academic) buffer overflow in MorphologicalOperations: Unknown Object (Differential Revision).
kislinsk triaged T30453: Fix (academic) buffer overflow in MorphologicalOperations as High priority.
kislinsk added a comment to T30452: Update valid MSVC version range for Visual Studio 2022 to include 194x.
Deleted branch from rMITK MITK: bugfix/T30452-MSVC-194x-Boost.
kislinsk committed rMITK4172509a4d21: Update valid MSVC version range for Visual Studio 2022 (authored by kislinsk).
Update valid MSVC version range for Visual Studio 2022
Upgrade Boost from v1.82 to v1.85
kislinsk committed rMITKdfcfcc2defed: Merge branch 'bugfix/T30452-MSVC-194x-Boost' into develop (authored by kislinsk).
Merge branch 'bugfix/T30452-MSVC-194x-Boost' into develop
kislinsk added a comment to T30452: Update valid MSVC version range for Visual Studio 2022 to include 194x.
Pushed new branch to rMITK MITK: bugfix/T30452-MSVC-194x-Boost.
kislinsk triaged T30452: Update valid MSVC version range for Visual Studio 2022 to include 194x as High priority.
a178n closed T30423: [SEG] Segment Anything misleading GPU message for first time users, a subtask of T29524: SAM in MITK, as Resolved.
a178n closed T30423: [SEG] Segment Anything misleading GPU message for first time users as Resolved.
Words like Sorry and You're in luck are removed.
a178n closed T30426: [SEG] Highlight importance of level window in Segment Anything, a subtask of T29524: SAM in MITK, as Resolved.
UI string updates
String update
Remove space between strings
a178n added a revision to T30423: [SEG] Segment Anything misleading GPU message for first time users: Unknown Object (Differential Revision).
SAM, MedSAM UI string updates
May 24 2024
May 24 2024
s434n added a revision to T30423: [SEG] Segment Anything misleading GPU message for first time users: Unknown Object (Differential Revision).
Could it make sense to add an additional field to the Image Navigator, similar to the "Loc. (mm)" but instead for time? Then both the timestep and the time in (ms) could be shown at the same time.
May 23 2024
May 23 2024
s434n added a revision to T30449: [MxN] Setting data-based layout does not update visibility: Unknown Object (Differential Revision).
May 22 2024
May 22 2024
s434n triaged T30450: [MxN] Visibility of label-nodes is confusing in unlocked windows as Normal priority.
s434n triaged T30449: [MxN] Setting data-based layout does not update visibility as Normal priority.
May 21 2024
May 21 2024
kislinsk edited projects for T30448: MITK snapshots/2024-05-02 Workbench not restarting, added: Missing Info, MITK (v2024.06); removed MITK.
As no such issue is already known to us there won't be any difference in the upcoming release. A little bit more information would be useful here. What version of Windows? Blocked/scanned by anti malware software/virus scanner? Where did they install MITK? User rights? What's the exact terminal output? What about the command-line apps?
May 17 2024
May 17 2024
kompan renamed T30448: MITK snapshots/2024-05-02 Workbench not restarting from MITK snapshots/2023-12-06 Workbench not restarting to MITK snapshots/2024-05-02 Workbench not restarting.
May 16 2024
May 16 2024
kompan added a project to T30204: Improve visibility between help files for perfusion: Next Milestone.
kompan added a project to T29638: ModelFit Inspector crahes sometimes on data selection: Next Milestone.
kompan closed T27339: Provide public MITK ModelFit installer on a regular basis, a subtask of T27340: [ModelFit] Request for Mac Workbench installer, as Resolved.
This task is closed since the ModelFit/Perfusion views will be part of MITK v2024.06 and it is planned that they will be part of the official releases from MITK v2024.06 onwards.
kompan added a project to T30437: [Perfusion] Provide example start parameter image for checklists: Next Milestone.
kompan edited projects for T26288: MRI Perfusion view should only generate concentration images once, added: Next Milestone; removed Cleared.
kompan closed T27739: Inspection positions deletion in ModelFit not updated in data display. as Resolved.
kompan committed rMITK4f7293627beb: Fix collection of bugs in the ModelFitInspectorView. (authored by kompan).
Fix collection of bugs in the ModelFitInspectorView.
kompan committed rMITK9f2fc5b40ff0: SmartPointer for m_PositionBookmarksNode and m_PositionBookmarks. (authored by kompan).
SmartPointer for m_PositionBookmarksNode and m_PositionBookmarks.
Remove empty line.
Fix comparison to resolve CI errors.
kompan committed rMITKa20f31105474: Use container iteration to iterated over static parameters. (authored by kompan).
Use container iteration to iterated over static parameters.
Remove old code.
kompan committed rMITKb836340cf070: Hide "Additional input data visibilty" field (T30238) (authored by kompan).
Hide "Additional input data visibilty" field (T30238)
kompan committed rMITK5a4e9e52341d: Fix inspection positions deletion update (T27739). (authored by kompan).
Fix inspection positions deletion update (T27739).
kompan committed rMITK6118a45f16a3: Write vectors of all AIF and AIF Timegrid values into fit result table (T30237). (authored by kompan).
Write vectors of all AIF and AIF Timegrid values into fit result table (T30237).
kompan committed rMITKbe8a6b91885f: Correction to set same colors in display of curves and in the view settings… (authored by kompan).
Correction to set same colors in display of curves and in the view settings…
Remove dublication of infoOutput.
May 15 2024
May 15 2024
kislinsk removed a project from T30446: Decouple Workbench plugin from optional views: Request for Discussion.
Discussion result: Option B.
kompan edited projects for T30428: DCE MR Perfusion DataFit View: Selected Mask widget can't find DICOM segmentation nodes, added: Next Milestone; removed Request for Discussion, Checklist.
kompan added a comment to T30428: DCE MR Perfusion DataFit View: Selected Mask widget can't find DICOM segmentation nodes.
In the MitkNodePredicateGeometry to precision is set to 1e-6. So this is at least one of the issues why the old masks are not found. It could be an option to relax the precision, but since the rotation matrix might have a large effect even for small inaccuracies, it needs to be thoroughly tested first how big the effect is if. e.g 1e-4 is accepted.
For now, the new segmentation masks are provided as test data instead of the old masks.
a178n closed T29197: [Segmentation] Is the classificationsegmentation-plugin used / required? as Resolved.
Already removed
a178n removed a project from T30412: [Statistics] Planar figure cannot be set as ROI for askew images: Request for Discussion.
a178n closed T30447: [TotalSeg] Levelwindow effect, a subtask of T29437: [SEG] Add TotalSegmentator, as Wontfix.
Have in base class and decide wich tools will have it or not. Not ideal for Totalsegmentator
kompan moved T30439: [Perfusion] Only a selection of debug parameter images generated as sub-nodes from Backlog to Cycle on the MITK (v2024.06) board.
kompan moved T30428: DCE MR Perfusion DataFit View: Selected Mask widget can't find DICOM segmentation nodes from Backlog to Cycle on the MITK (v2024.06) board.
floca moved T30447: [TotalSeg] Levelwindow effect from Backlog to MITK Meeting on the Request for Discussion board.
kislinsk moved T30446: Decouple Workbench plugin from optional views from Backlog to MITK Meeting on the Request for Discussion board.
May 14 2024
May 14 2024
Pushed new branch to rMITK MITK: feature/T30447-totalseg-levelwindow.
Pushed new branch to rMITK MITK: feature/T30430-python-venv-check.
kompan added a comment to T30428: DCE MR Perfusion DataFit View: Selected Mask widget can't find DICOM segmentation nodes.
I compared the geometry of the dynamic image, the old mask (which could not be found anymore) and a new mask (is found), using the Details info box in MITK. I found small differences in the geometries between the old mask and the dynamic image, but not between the new mask and the dynamic image. Namely:
Spacing:
dynamic image: [1.0156, 1.0156, 5.99998]
old mask: [1.0156, 1.0156, 5.99997]
new mask: [1.0156, 1.0156, 5.99998]
a178n added a revision to T30426: [SEG] Highlight importance of level window in Segment Anything: Unknown Object (Differential Revision).
Undo/redo is a known problem, covered by other tickets.
The crash propblem I was not able to reproduce.
T30444-Crash_when_working_with_labels