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Mon, Sep 16

kislinsk closed T29597: TotalSeg didn't remember python environment, a subtask of T29437: [SEG] Add TotalSegmentator, as Resolved.
Mon, Sep 16, 1:49 PM · MITK
kislinsk closed T29596: Move out FAST checkbox from Advanced as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion, Checklist
kislinsk closed T29597: TotalSeg didn't remember python environment as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist
kislinsk closed T29596: Move out FAST checkbox from Advanced, a subtask of T29437: [SEG] Add TotalSegmentator, as Resolved.
Mon, Sep 16, 1:49 PM · MITK
kislinsk closed T29595: Make nnUNet folder parsing more resilient to stray folders as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion, Checklist
kislinsk closed T29648: SAM Python: Improve the wrapper to be used independently without MITK, a subtask of T29539: SAM Python wrapper for MITK, as Resolved.
Mon, Sep 16, 1:49 PM · MITK (v2024.06)
kislinsk closed T29651: [Preferences] SAM tool Preferences not rendered nicely on MacOS, a subtask of T29524: SAM in MITK, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T29651: [Preferences] SAM tool Preferences not rendered nicely on MacOS as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29639: [Registration] Mapping crashes when super-sampling is activated as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Missing Info
kislinsk closed T29648: SAM Python: Improve the wrapper to be used independently without MITK as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T29653: SAM tool: Install process can be non-blocking as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29652: [Preferences] Cannot open SAM preference page after tool activation, a subtask of T29524: SAM in MITK, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T29652: [Preferences] Cannot open SAM preference page after tool activation as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29653: SAM tool: Install process can be non-blocking, a subtask of T29524: SAM in MITK, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30149: nnUNet(v2) in MITK as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30154: MONAI Label server usage issues, a subtask of T29192: [SEG] MONAI Label support in MITK Workbench, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29654: SAM tool: Preview not fully cleared when Reset Picks button is clicked as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30151: MONAI Label tool support CLICK interaction patterns, a subtask of T29192: [SEG] MONAI Label support in MITK Workbench, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29654: SAM tool: Preview not fully cleared when Reset Picks button is clicked, a subtask of T29524: SAM in MITK, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30147: MONAI Label: New approach using python wrapper??, a subtask of T29192: [SEG] MONAI Label support in MITK Workbench, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30149: nnUNet(v2) in MITK, a subtask of T29130: [WorkBench] Segmentation fault when "Close Project" is invoked and QmitkDataStorageComboBox widget is in UI, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30151: MONAI Label tool support CLICK interaction patterns as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30154: MONAI Label server usage issues as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30147: MONAI Label: New approach using python wrapper?? as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion
kislinsk closed T30160: Move MITK to our GitLab instance as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30164: [Segmentation] [Bug] 2D RGB image not correctly handled by SegPreviewTool API tool as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion
kislinsk closed T30168: Fail to load NIFTI images due to error "itk only supports orthonormal direction cosines" as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30171: [Py] View to execute scripts that interact with the rest of the workbench, a subtask of T30170: [Py] Python in MITK, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30172: [Py] UC1.1 - Selected image can be manipulated with simpleITK and updated as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30171: [Py] View to execute scripts that interact with the rest of the workbench as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30172: [Py] UC1.1 - Selected image can be manipulated with simpleITK and updated, a subtask of T30171: [Py] View to execute scripts that interact with the rest of the workbench, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30175: [Py] UC1.4 - All images in data storage that are visible are set opacity 50% in a specific render window, a subtask of T30171: [Py] View to execute scripts that interact with the rest of the workbench, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30181: Add option for a "mean" line profile in statistics view as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, Restricted Project, MITK
kislinsk closed T30174: [Py] UC1.3 - Selected image can be manipulated with simpleITK and added to data storage, a subtask of T30171: [Py] View to execute scripts that interact with the rest of the workbench, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30173: [Py] UC1.2 - Selected image are stored as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30173: [Py] UC1.2 - Selected image are stored, a subtask of T30171: [Py] View to execute scripts that interact with the rest of the workbench, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30175: [Py] UC1.4 - All images in data storage that are visible are set opacity 50% in a specific render window as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30174: [Py] UC1.3 - Selected image can be manipulated with simpleITK and added to data storage as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30186: PixelDumper view in MITK release as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30183: [REG] Add Elastix support to MITK as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30182: [SEG] Storing segmentation as DICOM Seg failes if reference image is not a valid DICOM as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30204: Improve visibility between help files for perfusion as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion
kislinsk closed T30232: MONAI Label: Level Window contrast effects as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30210: [SEG] Add dedicated reader for label image stack support as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30240: MonaiLabel: How to support more apps as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30209: [SEG] Add a writer for label image stack support as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30208: [SEG] Add support to read/write stack of label images from/to a mitk label image as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30209: [SEG] Add a writer for label image stack support, a subtask of T30208: [SEG] Add support to read/write stack of label images from/to a mitk label image, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30210: [SEG] Add dedicated reader for label image stack support, a subtask of T30208: [SEG] Add support to read/write stack of label images from/to a mitk label image, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30232: MONAI Label: Level Window contrast effects , a subtask of T29192: [SEG] MONAI Label support in MITK Workbench, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30240: MonaiLabel: How to support more apps, a subtask of T29192: [SEG] MONAI Label support in MITK Workbench, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30229: MONAI Label tool: Introduce time out parameter entry in Preferences, a subtask of T29192: [SEG] MONAI Label support in MITK Workbench, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30229: MONAI Label tool: Introduce time out parameter entry in Preferences as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion
kislinsk closed T30227: Link error between plugins F1-Help files as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30250: [MxN] Windows created by preset have no in-window menus as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30249: [Py] UC2.3 - Load images and explore properties, a subtask of T30361: [Py] pyMITK package to use MITK in a python environement, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30242: [MONAILabel] Trouble activating SSL support in Httplib as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30247: MONAILabel: Improve doxygen docstrings as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30247: MONAILabel: Improve doxygen docstrings, a subtask of T29192: [SEG] MONAI Label support in MITK Workbench, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30241: [MxN] Rethink select-all logic in MxN data selection, a subtask of T30360: [MxN] Add group synchronization, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30249: [Py] UC2.3 - Load images and explore properties as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30241: [MxN] Rethink select-all logic in MxN data selection as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30242: [MONAILabel] Trouble activating SSL support in Httplib, a subtask of T29192: [SEG] MONAI Label support in MITK Workbench, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30259: [Segmentation] Available models dropdown is empty in nnUNet tool as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30279: [Statistics] Fix cutoff of non-closed planar figures as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30267: [Segmentation] Undo/Redo does not work for many aspects of segmentation as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist
kislinsk closed T30268: [Checklist] Segmentation 3D Interpolation as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist
kislinsk closed T30257: Changing opacity messes up rendering order as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist
kislinsk closed T30301: Move Totalsegmentator installation into Preferences, a subtask of T29437: [SEG] Add TotalSegmentator, as Resolved.
Mon, Sep 16, 1:49 PM · MITK
kislinsk closed T30293: Introduce new interoperability/developer-friendly scene file format (including reader) as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30301: Move Totalsegmentator installation into Preferences as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30293: Introduce new interoperability/developer-friendly scene file format (including reader), a subtask of T24962: Refactor of LevelWindow and serialization of LevelWindowProperty, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, Auto-closed, MITK
kislinsk closed T30283: Make MITK Workbench more customizable for end-users as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30313: SegmentAnyBone in MITK as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30313: SegmentAnyBone in MITK, a subtask of T29191: [SEG] New segmentation tool candidates, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30314: MedSAM in MITK, a subtask of T29191: [SEG] New segmentation tool candidates, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30314: MedSAM in MITK as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30328: Failure when loading DICOM files with missing series instance UID as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30333: Add introductory startup dialog or Welcome page, a subtask of T30283: Make MITK Workbench more customizable for end-users, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30333: Add introductory startup dialog or Welcome page as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30335: [Py] UC2.2 - Load images and manipulate with a sitk filter, a subtask of T30361: [Py] pyMITK package to use MITK in a python environement, as Resolved.
Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30335: [Py] UC2.2 - Load images and manipulate with a sitk filter as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30369: [Statistics] Position of minimum and maximum are one off for masks of rotated images as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30372: [Statistics] Replace secondary mask in mitk::ImageStatisticsGenerator by an "AndMaskGenerator" as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12), Breaking Change
kislinsk closed T30360: [MxN] Add group synchronization as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30370: [Statistics] Order labels the same way as in the Segmentation View as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30389: [MxN] Expand options of (semi-)automated layout creation as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30348: [Statistics] QmitkImagesStatisticsTreeModel currently does not update when names of inputs changes as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30394: [MxN] Disconnect MxN windows from StdMultiWidget as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30388: [EUCAIM] Provide MITK as interactive tool in EUCAIM as Resolved.

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Mon, Sep 16, 1:49 PM · Moved to git.dkfz.de, Kaapana (internal), MITK
kislinsk closed T30415: [Level Window] Changing level window with multiple images is confusing as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist
kislinsk closed T30410: [Segmentation] 2-d interpolation does not interpolate between multiple slices as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30427: [SEG] No status change message after changing model type to ‘vit_l’., a subtask of T29524: SAM in MITK, as Resolved.
Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30425: [SEG] Segment Anything - Loading errors occur when opening the preferences as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist
kislinsk closed T30401: Thumbnail image generation should be moved to QmitkNodeDescriptor as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30424: [SEG] Reduce size of dots in Segment Anything as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist
kislinsk closed T30412: [Statistics] Planar figure cannot be set as ROI for askew images as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30433: [Perfusion] Inconsistent appearance of info box message "Cannot compute parameters. No node selected." as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30431: [TotalSeg] Installation status for user as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30427: [SEG] No status change message after changing model type to ‘vit_l’. as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist
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