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Nov 30 2018

floca committed rMITKde3cac336ff4: Renamed and moved QmitkInfoDialog (authored by floca).
Renamed and moved QmitkInfoDialog
Nov 30 2018, 12:55 PM
floca committed rMITK56b8e4d3431d: Added Overlay and CheckFunction to QmitkMultiNodeSelectionWidget. (authored by floca).
Added Overlay and CheckFunction to QmitkMultiNodeSelectionWidget.
Nov 30 2018, 12:55 PM
floca committed rMITKb5c511af540b: Added QmitkOverlayWidget (authored by floca).
Added QmitkOverlayWidget
Nov 30 2018, 12:55 PM
floca committed rMITK78dac558cbd4: Merge remote-tracking branch 'origin/master' into T25693… (authored by floca).
Merge remote-tracking branch 'origin/master' into T25693…
Nov 30 2018, 12:54 PM
floca committed rMITK4901f3249287: Improved MultiNodeSelectionWidget (authored by floca).
Improved MultiNodeSelectionWidget
Nov 30 2018, 12:54 PM
floca committed rMITK91fb620046c3: Fixed color theme styling (authored by floca).
Fixed color theme styling
Nov 30 2018, 12:54 PM
kalali placed T25699: Explicitly set data node selection of the context menu (actions) up for grabs.
Nov 30 2018, 12:14 PM · MITK
kalali updated the task description for T25688: Render window manager with custom multi widget: beta version.
Nov 30 2018, 12:14 PM · Noteworthy, Restricted Project, MITK
kalali added a comment to T25699: Explicitly set data node selection of the context menu (actions).

We should also investigate if the workbenchpartsite needs to be optional (may not be accessible).

Nov 30 2018, 11:51 AM · MITK
kalali triaged T25699: Explicitly set data node selection of the context menu (actions) as Normal priority.
Nov 30 2018, 11:48 AM · MITK
hentsch triaged T25697: Optimization of MitkImageStatisticsCalculatorTest as Normal priority.
Nov 30 2018, 11:18 AM · Restricted Project, MITK
kalali updated the task description for T25688: Render window manager with custom multi widget: beta version.
Nov 30 2018, 10:53 AM · Noteworthy, Restricted Project, MITK

Nov 29 2018

kalali updated the task description for T25688: Render window manager with custom multi widget: beta version.
Nov 29 2018, 5:42 PM · Noteworthy, Restricted Project, MITK
kalali committed rMITK2123fa1e494a: Merge branch 'T25056-Master-integration' Enable hotkeys preference page in… (authored by kalali).
Merge branch 'T25056-Master-integration' Enable hotkeys preference page in…
Nov 29 2018, 5:31 PM
kalali committed rMITK7836da9ac4ff: Merge remote-tracking branch 'origin/T25171-Hotkeys-preference-page-crash' into… (authored by kalali).
Merge remote-tracking branch 'origin/T25171-Hotkeys-preference-page-crash' into…
Nov 29 2018, 4:56 PM
kalali committed rMITK8de786a10547: Merge branch 'T25694-Enable-data-manager-hotkeys' into T25056-Master-integration (authored by kalali).
Merge branch 'T25694-Enable-data-manager-hotkeys' into T25056-Master-integration
Nov 29 2018, 4:56 PM
kalali added a comment to T25056: Refactor data manager context menu.

Master-integration contains T23590, T25643 and T25694 as a first stable working version.

Nov 29 2018, 4:56 PM · MITK (v2024.06), Noteworthy
kalali added a comment to T25056: Refactor data manager context menu.

Pushed new branch T25056-Master-integration.

Nov 29 2018, 4:56 PM · MITK (v2024.06), Noteworthy
kalali closed T25694: Enable data manager hotkeys as Resolved.

Contained in T25056

Nov 29 2018, 4:53 PM · MITK
kalali closed T25694: Enable data manager hotkeys, a subtask of T25056: Refactor data manager context menu, as Resolved.
Nov 29 2018, 4:53 PM · MITK (v2024.06), Noteworthy
kalali closed T25171: Workbench crashes when accessing the "Hotkeys"-Preference page for the data manager (only debug) as Resolved.

Contained in T25056

Nov 29 2018, 4:52 PM · Restricted Project, MITK
kalali claimed T25171: Workbench crashes when accessing the "Hotkeys"-Preference page for the data manager (only debug).
Nov 29 2018, 4:28 PM · Restricted Project, MITK
kalali committed rMITK36dc69d97670: Remove needless classes (authored by kalali).
Remove needless classes
Nov 29 2018, 4:22 PM
kalali committed rMITK7f874e19ffe1: Add hotkeys preference page and key filter; make actions globally accessible (authored by kalali).
Add hotkeys preference page and key filter; make actions globally accessible
Nov 29 2018, 4:22 PM
kalali committed rMITK258e0e5ae890: Merge remote-tracking branch 'origin/T25643-Context-menu-actions-added-multiple… (authored by kalali).
Merge remote-tracking branch 'origin/T25643-Context-menu-actions-added-multiple…
Nov 29 2018, 4:22 PM
kalali committed rMITK190ff81df40b: Apply changes of T23590 to the new decoupled context menu (actions) (authored by kalali).
Apply changes of T23590 to the new decoupled context menu (actions)
Nov 29 2018, 4:22 PM
kalali committed rMITKb28e35f456af: Merge branch 'T25056-Refactor-data-manager-context-menu' into T25056-Master… (authored by kalali).
Merge branch 'T25056-Refactor-data-manager-context-menu' into T25056-Master…
Nov 29 2018, 4:22 PM
kalali added a comment to T25694: Enable data manager hotkeys.

Pushed new branch T25694-Enable-data-manager-hotkeys.

Nov 29 2018, 4:22 PM · MITK
kalali updated the task description for T25688: Render window manager with custom multi widget: beta version.
Nov 29 2018, 12:16 PM · Noteworthy, Restricted Project, MITK
floca committed rMITK2a44c213a300: Fixed/optimized plugin ui (authored by floca).
Fixed/optimized plugin ui
Nov 29 2018, 12:13 PM
kislinsk closed T25696: Remove superfluous COMMAND command in Boost.cmake as Resolved.
Nov 29 2018, 11:53 AM · MITK
kislinsk committed rMITKcbd1ccf538c8: Merge branch 'T25696-SuperfluousCOMMAND' (authored by kislinsk).
Merge branch 'T25696-SuperfluousCOMMAND'
Nov 29 2018, 11:49 AM
kislinsk committed rMITK58328127ac94: Remove superfluous COMMAND command (authored by kislinsk).
Remove superfluous COMMAND command
Nov 29 2018, 11:48 AM
kislinsk added a comment to T25696: Remove superfluous COMMAND command in Boost.cmake.

Pushed new branch T25696-SuperfluousCOMMAND.

Nov 29 2018, 11:48 AM · MITK
kislinsk triaged T25696: Remove superfluous COMMAND command in Boost.cmake as Low priority.
Nov 29 2018, 11:46 AM · MITK
kislinsk added a parent task for T25510: Revolutionize Superbuild: Unknown Object (Maniphest Task).
Nov 29 2018, 11:35 AM · Auto-closed, MITK
kalali triaged T25694: Enable data manager hotkeys as Normal priority.
Nov 29 2018, 10:09 AM · MITK
franza moved T25608: OpenCV example (view VideoPlayer, org.mitk.examples.gui.opencv) is not functional any more. from Backlog to In Progress on the IGT board.
Nov 29 2018, 9:54 AM · MITK, IGT
franza assigned T25223: Add freeze method to AbstractUltrasoundTrackerDevice to mittmann.

Started implementation in the branch, but doesn't work yet. Benjamin, can you fix this at the community day?

Nov 29 2018, 9:53 AM · IGT, MITK
franza placed T25223: Add freeze method to AbstractUltrasoundTrackerDevice up for grabs.
Nov 29 2018, 9:52 AM · IGT, MITK
franza moved T25224: Ultrasound plugin: UI tab for spacing calibration from Backlog to In Progress on the IGT board.
Nov 29 2018, 9:52 AM · IGT, MITK
franza closed T25478: Multiple Qt timers overload main thread in Navigation plugins as Wontfix.

I think the main problem is the 3D rendering update. With the suggestions written down in the last comments we can however reach about 20 fps which is ok for the demos. We wont fix this now.

Nov 29 2018, 9:51 AM · IGT, MITK
franza moved T25494: Cleanup plugin HummelProtocolMeasurements from Backlog to In Progress on the IGT board.
Nov 29 2018, 9:49 AM · Auto-closed, IGT, MITK
floca committed rMITKf66dc22d5451: First test to style text document viy stylesheet correctly. (authored by floca).
First test to style text document viy stylesheet correctly.
Nov 29 2018, 9:20 AM
floca added a comment to T25693: Improve styling/ui of new selection widgets.

Pushed new branch T25693-Improve_UI_selection_widgets.

Nov 29 2018, 9:20 AM · MITK
floca triaged T25693: Improve styling/ui of new selection widgets as Normal priority.
Nov 29 2018, 8:45 AM · MITK

Nov 28 2018

mittmann committed rMITK2b27be110e36: Added part I for automated Ground-Truth-Fiducial-Localization-Protocol… (authored by mittmann).
Added part I for automated Ground-Truth-Fiducial-Localization-Protocol…
Nov 28 2018, 6:21 PM
kalali updated the task description for T25688: Render window manager with custom multi widget: beta version.
Nov 28 2018, 6:00 PM · Noteworthy, Restricted Project, MITK
kislinsk closed T25692: Update CMake minimum required version to 3.13 as Resolved.
Nov 28 2018, 3:45 PM · MITK
kislinsk committed rMITK6ad602cf62a7: Merge branch 'T25692-CMake-3.13' (authored by kislinsk).
Merge branch 'T25692-CMake-3.13'
Nov 28 2018, 3:45 PM
kislinsk committed rMITK2a0b3a293b39: Update minimum required version of CMake to 3.13 (authored by kislinsk).
Update minimum required version of CMake to 3.13
Nov 28 2018, 3:44 PM
kislinsk added a comment to T25692: Update CMake minimum required version to 3.13.

Pushed new branch T25692-CMake-3.13.

Nov 28 2018, 3:44 PM · MITK
floca committed rMITK95964e1cf96b: Improved QmitkImageStatisticsTableModel (authored by floca).
Improved QmitkImageStatisticsTableModel
Nov 28 2018, 3:44 PM
kislinsk triaged T25692: Update CMake minimum required version to 3.13 as Wishlist priority.
Nov 28 2018, 3:42 PM · MITK
neher committed rMITK5f24bd7b4514: Cmake minimum 3.13 (authored by neher).
Cmake minimum 3.13
Nov 28 2018, 3:07 PM
mittmann committed rMITKa703550cc2af: Added GUI elements for Ground-Truth-Fiducial-Localization-Protocol-Evaluation… (authored by mittmann).
Added GUI elements for Ground-Truth-Fiducial-Localization-Protocol-Evaluation…
Nov 28 2018, 3:06 PM
neher committed rMITKa3760cb5b4fb: Merge branch 'T25419-Omp' (authored by neher).
Merge branch 'T25419-Omp'
Nov 28 2018, 2:58 PM
hentsch placed T25676: Add new icons to the tutorial up for grabs.
Nov 28 2018, 2:55 PM · Auto-closed, MITK
neher committed rMITKb9e8be262c56: Adding openmp libraries to dependency list. Fix remaining bugs. (authored by neher).
Adding openmp libraries to dependency list. Fix remaining bugs.
Nov 28 2018, 2:51 PM
kalali updated the task description for T25688: Render window manager with custom multi widget: beta version.
Nov 28 2018, 1:56 PM · Noteworthy, Restricted Project, MITK
steint committed rMITKb06f60c23615: add threshold to plot temporary changes to Chart.js (authored by steint).
add threshold to plot temporary changes to Chart.js
Nov 28 2018, 12:58 PM
steint committed rMITKebd9f48c7c98: Merge remote-tracking branch 'origin' into T25025-seg-rework-plugin (authored by steint).
Merge remote-tracking branch 'origin' into T25025-seg-rework-plugin
Nov 28 2018, 12:57 PM
floca committed rMITKaa3b9c8c88d8: Fixed T25570 (authored by floca).
Fixed T25570
Nov 28 2018, 12:23 PM
floca committed rMITK8f527fc580fc: Fixed T25566 (authored by floca).
Fixed T25566
Nov 28 2018, 12:23 PM
floca committed rMITK99ab7c492f7c: Merge remote-tracking branch 'origin/T24182-integrationToMaster' into T24182… (authored by floca).
Merge remote-tracking branch 'origin/T24182-integrationToMaster' into T24182…
Nov 28 2018, 12:22 PM
kislinsk added a comment to T25682: mitkBaseGeometry.cpp: Internal ITK matrix inversion error, cannot proceed..

Even when deactivating the askew image handling, there's matrix inversion errors with the original image matrix.

Nov 28 2018, 12:18 PM · MITK
kislinsk added a comment to T24770: WeakPointer: Exception on OnDeleteEvent when closing MITK workbench.

I interpret the section about application-level multithreading as "do it yourself in terms of event mechanisms and stuff". So this is still my first guess. We should at least update the WeakPointer documentation or think about if and how we could get it to work anyways.

Nov 28 2018, 11:19 AM · Auto-closed, MITK
kislinsk triaged T25682: mitkBaseGeometry.cpp: Internal ITK matrix inversion error, cannot proceed. as Normal priority.
Nov 28 2018, 9:41 AM · MITK
kislinsk added a comment to T25682: mitkBaseGeometry.cpp: Internal ITK matrix inversion error, cannot proceed..

Just checked the original DICOM and my output file of the derived image above. The original DICOM has the matrix inversion issue already. I bring the files along...

Nov 28 2018, 9:41 AM · MITK
isensee added a comment to T25682: mitkBaseGeometry.cpp: Internal ITK matrix inversion error, cannot proceed..

As far as I can tell files were split along t with fslsplit.

Nov 28 2018, 9:01 AM · MITK
kislinsk added a comment to T25682: mitkBaseGeometry.cpp: Internal ITK matrix inversion error, cannot proceed..

I'll catch some of the files on my way to the Hacking Week...

Nov 28 2018, 8:47 AM · MITK
kislinsk added a comment to T25682: mitkBaseGeometry.cpp: Internal ITK matrix inversion error, cannot proceed..

I converted them with a simple two-liner: mitk::IOUtil::Load<mitk::Image>(); mitk::IOUtil::Save();

Nov 28 2018, 8:45 AM · MITK

Nov 27 2018

nolden updated subscribers of T25682: mitkBaseGeometry.cpp: Internal ITK matrix inversion error, cannot proceed..

@full @schererj @kislinsk : how did you convert these files exactly? If I load the DICOM with a current MITK Workbench -> no problem, re-init fine. Save as nifti, quit, restart, load nifti, re-init -> no problem as well.

Nov 27 2018, 5:45 PM · MITK
kalali moved T25688: Render window manager with custom multi widget: beta version from Restricted Project Column to Restricted Project Column on the Restricted Project board.
Nov 27 2018, 4:52 PM · Noteworthy, Restricted Project, MITK
kalali updated the task description for T25688: Render window manager with custom multi widget: beta version.
Nov 27 2018, 4:51 PM · Noteworthy, Restricted Project, MITK
kalali triaged T25688: Render window manager with custom multi widget: beta version as Normal priority.
Nov 27 2018, 4:51 PM · Noteworthy, Restricted Project, MITK
hentsch claimed T25569: Ensure correct TimeGeometry of statisticsContainer in calculator.
Nov 27 2018, 4:30 PM · MITK
kalali added a comment to T23764: Create crosshair for single render windows.

T25602 changed the render window manager to be a data storage inspector. Therefore data nodes don't have to be added or removed by the user but the render window manager will always provide a filtered view on the data storage (filtered by the currently active base renderer).

Nov 27 2018, 4:08 PM · MITK
sattler committed rMITKcb0d8aad8c51: added some more info (i.e. uptime timestamps - just to be sure) (authored by sattler).
added some more info (i.e. uptime timestamps - just to be sure)
Nov 27 2018, 4:06 PM
kalali added a comment to T25056: Refactor data manager context menu.

Consider T25645 (already included in T25601 via T24936).

Nov 27 2018, 3:57 PM · MITK (v2024.06), Noteworthy
hentsch committed rMITK6915b5ee88e4: Merge branch 'T25576-optimizeView' into T24182-integrationToMaster (authored by hentsch).
Merge branch 'T25576-optimizeView' into T24182-integrationToMaster
Nov 27 2018, 2:22 PM
hentsch committed rMITK8045f3cc769c: refactored code. (authored by hentsch).
refactored code.
Nov 27 2018, 2:21 PM
kalali added a comment to T25683: Chart Example Plugin.

pie_chart.jpg (558×500 px, 111 KB)

Nov 27 2018, 1:34 PM · MITK
mittmann committed rMITKc1c30a3c521b: Added option for localizing fiducials of three different fiducial marker… (authored by mittmann).
Added option for localizing fiducials of three different fiducial marker…
Nov 27 2018, 1:32 PM
floca committed rMITK764e1ec09999: Simplified QmitkImageStatisticsTableModel business logic (authored by floca).
Simplified QmitkImageStatisticsTableModel business logic
Nov 27 2018, 11:37 AM
hentsch placed T25683: Chart Example Plugin up for grabs.

2nj8q2.png (500×500 px, 8 KB)

Nov 27 2018, 10:47 AM · MITK
kleina added a comment to T25683: Chart Example Plugin.

Nice!

Nov 27 2018, 10:35 AM · MITK
hentsch committed rMITKcf061ff17be5: Added plugin for creating and testing MitkChart (authored by hentsch).
Added plugin for creating and testing MitkChart
Nov 27 2018, 10:31 AM
hentsch added a comment to T25683: Chart Example Plugin.

Pushed new branch T25683-chartExamplePlugin.

Nov 27 2018, 10:31 AM · MITK
isensee added a comment to T25682: mitkBaseGeometry.cpp: Internal ITK matrix inversion error, cannot proceed..

These images are from the Kora Dataset. Peter Full and @kislinsk have the original DICOM images.
The images were 4d DICOM originally and have been converted into 3d nifti by @kislinsk

Nov 27 2018, 9:38 AM · MITK
nolden added a comment to T25682: mitkBaseGeometry.cpp: Internal ITK matrix inversion error, cannot proceed..

@isensee : what is the source of these images? any chance to get the original DICOM?

Nov 27 2018, 9:37 AM · MITK

Nov 26 2018

floca committed rMITK41101c032c71: started T25570 (authored by floca).
started T25570
Nov 26 2018, 5:42 PM
nolden updated subscribers of T25682: mitkBaseGeometry.cpp: Internal ITK matrix inversion error, cannot proceed..
Nov 26 2018, 5:35 PM · MITK
nolden updated subscribers of T25682: mitkBaseGeometry.cpp: Internal ITK matrix inversion error, cannot proceed..

Log output with debug version:

Nov 26 2018, 5:35 PM · MITK
sattler committed rMITKa8fa32237d4d: system_clock is apparently not an alias for steady_clock under windows. fixed… (authored by sattler).
system_clock is apparently not an alias for steady_clock under windows. fixed…
Nov 26 2018, 3:15 PM
steint committed rMITK2cf328cc6ffb: Merge branch 'T25437-switch-to-plotly' (authored by steint).
Merge branch 'T25437-switch-to-plotly'
Nov 26 2018, 3:06 PM
steint committed rMITKcf5fc8a97d16: Merge remote-tracking branch 'origin' into T25025-seg-rework-plugin (authored by steint).
Merge remote-tracking branch 'origin' into T25025-seg-rework-plugin
Nov 26 2018, 2:02 PM
kleina triaged T25683: Chart Example Plugin as Normal priority.
Nov 26 2018, 1:43 PM · MITK
sattler committed rMITK32234825c5b1: changed ALL clocks to steady_clocks counting from 1970. Never forget the pyro. (authored by sattler).
changed ALL clocks to steady_clocks counting from 1970. Never forget the pyro.
Nov 26 2018, 1:07 PM
steint committed rMITK4607338b80b9: UI improvements (authored by steint).
UI improvements
Nov 26 2018, 11:24 AM