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Nov 26 2018

isensee added a comment to T25682: mitkBaseGeometry.cpp: Internal ITK matrix inversion error, cannot proceed..

I accidentally uploaded the segmentation. This is the raw data. The problem occurs with both.

Nov 26 2018, 11:22 AM · MITK
isensee created T25682: mitkBaseGeometry.cpp: Internal ITK matrix inversion error, cannot proceed..
Nov 26 2018, 11:21 AM · MITK
kalali committed rMITKf305bd9350a2: Some refactoring and correction (authored by kalali).
Some refactoring and correction
Nov 26 2018, 9:41 AM
kalali committed rMITKdd613f292a36: Add render window selection widget (authored by kalali).
Add render window selection widget
Nov 26 2018, 9:41 AM
kalali committed rMITKcd9997593a8d: Extend for multiple renderer (authored by kalali).
Extend for multiple renderer
Nov 26 2018, 9:41 AM
kalali added a comment to T25604: New concept for switching between different render windows.

Pushed new branch T25604-Switch-between-different-render-windows.

Nov 26 2018, 9:41 AM · Auto-closed, Request for Discussion, Restricted Project, MITK
kalali placed T24356: Rework mouse mode switcher up for grabs.
Nov 26 2018, 9:23 AM · MITK
kalali claimed T24161: Common interface for Custom-/Std-Multi widget (editor).
Nov 26 2018, 9:20 AM · Restricted Project, MITK
kalali committed rMITK9cddbf24f201: Move decoration manager (authored by kalali).
Move decoration manager
Nov 26 2018, 9:20 AM
kalali committed rMITKa32dec37abd3: Switch to abstract multi widget (authored by kalali).
Switch to abstract multi widget
Nov 26 2018, 9:20 AM
kalali committed rMITK7505df60037e: Move and refactor custom multi widget (editor) (authored by kalali).
Move and refactor custom multi widget (editor)
Nov 26 2018, 9:20 AM
kalali committed rMITK34b21a8b3e92: Add abstract multi widget and abstract multi widget editor (authored by kalali).
Add abstract multi widget and abstract multi widget editor
Nov 26 2018, 9:20 AM
kalali committed rMITK2a29428797f7: Removed interface ILinkedRenderWindowPart (authored by kalali).
Removed interface ILinkedRenderWindowPart
Nov 26 2018, 9:20 AM
kalali added a comment to T24161: Common interface for Custom-/Std-Multi widget (editor).

Pushed new branch T24161-Common-interface-for-multi-widget.

Nov 26 2018, 9:20 AM · Restricted Project, MITK
kalali committed rMITK142d574d8b2b: Merge branch 'T24771-New-selection-concept-documentation' into T24771… (authored by kalali).
Merge branch 'T24771-New-selection-concept-documentation' into T24771…
Nov 26 2018, 9:14 AM
kalali committed rMITKc894ca3022f8: Extend documentation (authored by kalali).
Extend documentation
Nov 26 2018, 9:14 AM
kalali added a comment to T24771: [MITKDoc] Add a concept documentation for the data storage inspectors and the overhaul of the selection concept.

Pushed new branch T24771-Integration.

Nov 26 2018, 9:14 AM · MITK (v2021.02)

Nov 23 2018

kalali updated the task description for T24771: [MITKDoc] Add a concept documentation for the data storage inspectors and the overhaul of the selection concept.
Nov 23 2018, 7:12 PM · MITK (v2021.02)
kislinsk committed rMPTccd95252908b: Fix unused parameter (authored by kislinsk).
Fix unused parameter
Nov 23 2018, 12:22 PM
steint added a comment to T25437: Evaluate to switch from C3.js to Plotly.js.

The branch is checked into the master and tested with the image statistics plugin.
The complete API of QmitkChartWidget is not tested in detail, for example more than one labels with different chart type...

Nov 23 2018, 11:51 AM · Noteworthy, Restricted Project, MITK
groehl added a member for IMSY: sattler.
Nov 23 2018, 11:48 AM
hentsch claimed T25676: Add new icons to the tutorial.
Nov 23 2018, 11:48 AM · Auto-closed, MITK
hentsch triaged T25676: Add new icons to the tutorial as Normal priority.
Nov 23 2018, 11:45 AM · Auto-closed, MITK
kislinsk committed rMPT9a2679190364: Use new MITK v2018.04 extension mechanism (authored by kislinsk).
Use new MITK v2018.04 extension mechanism
Nov 23 2018, 11:44 AM
kislinsk moved T24303: A segmentation should generate all DICOM relevant IDs as soon as it can be referenced. from MITK Meeting to Backlog on the Request for Discussion board.
Nov 23 2018, 11:18 AM · Auto-closed, DICOM, MITK
kislinsk moved T25177: Use the new data node context menu for data storage inspectors from MITK Meeting to Backlog on the Request for Discussion board.
Nov 23 2018, 11:16 AM · Auto-closed, Request for Discussion, MITK
steint committed rMITK65e51415617c: remove d3/c3 css and js files which are now replaced by plot.ly (authored by steint).
remove d3/c3 css and js files which are now replaced by plot.ly
Nov 23 2018, 10:53 AM
hentsch added a comment to T25619: Remaining Todos for MITK v2018.04.

The tutorial ("Welcome screen") has light theme and the old icons. This might be quite confusing for new users.

Nov 23 2018, 10:52 AM · MITK (2018-04)
hentsch claimed T24498: Update MITK Wikipedia page.
Nov 23 2018, 10:50 AM · MITK (2018-04)
kislinsk removed a project from T24860: MitkCore seems not to apply a default level/window property ("levelwindow"): Request for Discussion.
Nov 23 2018, 10:44 AM · MITK
kislinsk removed a project from T22330: 3D and 2D interpolation does not work in the multilabelsegmentation plugin: Request for Discussion.
Nov 23 2018, 10:42 AM · MITK
kleina added a member for Deep Learning: greinerm.
Nov 23 2018, 10:38 AM
steint committed rMITKc819c1d631f6: Add js documentation Add axis scaling Support many data labels with specific… (authored by steint).
Add js documentation Add axis scaling Support many data labels with specific…
Nov 23 2018, 10:33 AM

Nov 22 2018

jaegerp committed rMDTPUBLIC695277d58112: change defaut exec args (authored by jaegerp).
change defaut exec args
Nov 22 2018, 3:11 PM
jaegerp committed rMDTPUBLICbf77e01d6d59: initial commit (authored by jaegerp).
initial commit
Nov 22 2018, 3:03 PM
kislinsk triaged T25513: Legend overlay of colormap as Wishlist priority.
Nov 22 2018, 2:24 PM · Auto-closed, Restricted Project, Restricted Project, MITK
kislinsk triaged T25567: Data quality analysis as Wishlist priority.
Nov 22 2018, 2:24 PM · MITK Diffusion
kislinsk triaged T25510: Revolutionize Superbuild as Wishlist priority.
Nov 22 2018, 2:23 PM · Auto-closed, MITK
kislinsk triaged T25445: MultiLabel segmentation mapper is very slow as Low priority.

Typical candidate is unnecessary generation of data becasuse timestamps are not utilized to their fullest in a mapper.

Nov 22 2018, 2:23 PM · MITK (v2024.06), Request for Discussion
kislinsk triaged T25440: Image writer share priority with readers as Wishlist priority.
Nov 22 2018, 2:21 PM · Auto-closed, MITK
kislinsk triaged T25424: Since cmake 3.12 FindPythonLibs is deprecated as Wishlist priority.
Nov 22 2018, 2:20 PM · MITK
kislinsk triaged T25421: Documentation build fails on Ubuntu 18.04 and 16.04 (different errors) as Normal priority.
Nov 22 2018, 2:20 PM · Auto-closed, MITK
kislinsk triaged T25416: How to create a new MITK Plugin - start confusing as Normal priority.

Whoever will work on this: We currently are based on CMake 3.10. With CMake 3.13 there is a new standard way of setting the debug environment (e.g. PATH=...) for visual studio projects.

Nov 22 2018, 2:19 PM · Auto-closed, MITK
kislinsk triaged T25316: ThemeIcon() of QmitkStyleManager and berryQtStyleManager does not work with eager plugins as Normal priority.
Nov 22 2018, 2:17 PM · MITK
kislinsk triaged T25307: Clean up remove deprecated dicom properties as Wishlist priority.
Nov 22 2018, 2:16 PM · MITK
floca added a comment to T24770: WeakPointer: Exception on OnDeleteEvent when closing MITK workbench.

Threading issue? Making WeakPointer thread-safe?

That wouldn't contradict the racing condition assumption. Isn't the WeakPointer thread-safe already?

Nov 22 2018, 1:35 PM · Auto-closed, MITK
kislinsk triaged T25305: Property enums of DICOM module are not supported by scene serialization as Low priority.
Nov 22 2018, 11:56 AM · MITK (v2024.06), Restricted Project
kislinsk triaged T25256: MITK license file features "Division of Medical and Biological Informatics" as Low priority.
Nov 22 2018, 11:55 AM · MITK
kislinsk closed T22429: Ugrade SOFA to latest release as Wontfix.
Nov 22 2018, 11:55 AM · MITK
kislinsk triaged T25097: ItkImageIOTest: Missing tests for reading nrrd data with time geometry as Normal priority.
Nov 22 2018, 11:54 AM · MITK (v2024.06), Cleared, Restricted Project
kislinsk triaged T25065: Incorrect loading of DICOM images generated by SIEMENS MR-PET as Normal priority.
Nov 22 2018, 11:53 AM · Restricted Project, MITK
kislinsk triaged T25043: Remove pixel informations from the statusbar and put it into views as Wishlist priority.
Nov 22 2018, 11:53 AM · Cleared, MITK
kislinsk triaged T25042: How to handle update informations in heterogeneous time geometries and out of bound situations as Normal priority.
Nov 22 2018, 11:52 AM · MITK
kislinsk triaged T25035: CTK does not build in debug mode on windows if python is enabled as Normal priority.
Nov 22 2018, 11:52 AM · MITK
kislinsk triaged T25024: Image navigator slicing as Low priority.
Nov 22 2018, 11:51 AM · Auto-closed, Request for Discussion, MITK
kislinsk triaged T24994: Qt library version mix crashes Workbench on first launch as Normal priority.

This really is an issue on Ubuntu at the moment. Works with installed version of the Workbench, but requires the system-version of Qt5PrintSupport to be installed with the built version of the Workbench. Then, the message mentioned above shows up and every start afterwards works.

Nov 22 2018, 11:50 AM · Auto-closed, MITK
kalali lowered the priority of T19971: Level Window Slider does not fit to values for Center&Window from High to Normal.

Is this connected to (or even the same problem as in) T23590?

Nov 22 2018, 11:50 AM · Restricted Project, MITK
kislinsk triaged T24962: Refactor of LevelWindow and serialization of LevelWindowProperty as Wishlist priority.
Nov 22 2018, 11:47 AM · Auto-closed, MITK
kalali added a project to T25584: Workbench randomly crashes when applying colormaps: Restricted Project.
Nov 22 2018, 11:47 AM · Auto-closed, Restricted Project, MITK
kislinsk triaged T24885: Coupled crosshair rotation out-of-view bug as Low priority.
Nov 22 2018, 11:47 AM · Auto-closed, MITK
kislinsk triaged T24799: Optimize DicomRTIOMimeTypes as Wishlist priority.
Nov 22 2018, 11:46 AM · MITK (v2024.06)
kislinsk triaged T24770: WeakPointer: Exception on OnDeleteEvent when closing MITK workbench as Normal priority.

Threading issue? Making WeakPointer thread-safe?

Nov 22 2018, 11:46 AM · Auto-closed, MITK
kislinsk triaged T24710: Check failing dicom data in MITK-Data as Normal priority.
Nov 22 2018, 11:44 AM · DICOM, Restricted Project, MITK
kislinsk added a project to T25030: Image navigator time slider moves twice: Restricted Project.
Nov 22 2018, 11:43 AM · MITK (v2021.02)
kislinsk triaged T25030: Image navigator time slider moves twice as Low priority.
Nov 22 2018, 11:43 AM · MITK (v2021.02)

Nov 21 2018

kislinsk updated the task description for T25619: Remaining Todos for MITK v2018.04.
Nov 21 2018, 10:42 AM · MITK (2018-04)

Nov 20 2018

floca added a comment to T25437: Evaluate to switch from C3.js to Plotly.js.

I like it.

Nov 20 2018, 5:45 PM · Noteworthy, Restricted Project, MITK
hentsch committed rMITK53a69b1a12be: Merge branch 'T25562-rethinkGetStatisticsAsOrderedVector' into T24182… (authored by hentsch).
Merge branch 'T25562-rethinkGetStatisticsAsOrderedVector' into T24182…
Nov 20 2018, 4:26 PM
hentsch closed T25562: Rethink GetStatisticsAsOrderedVector(), a subtask of T25561: Optimize imageStatisticsContainer, as Resolved.
Nov 20 2018, 4:26 PM · MITK
hentsch closed T25562: Rethink GetStatisticsAsOrderedVector() as Resolved.
Nov 20 2018, 4:26 PM · MITK
hentsch added a comment to T25562: Rethink GetStatisticsAsOrderedVector().

also tested on Linux

Nov 20 2018, 4:22 PM · MITK
hentsch added a comment to T24333: Noteworthy new features since MITK 2016.11.

warnings as errors on by default: New CMake option WARNINGS_NO_ERRORS

Nov 20 2018, 1:50 PM · MITK (2018-04)
sattler committed rMITK06a2c976a46d: replaced the timestamps when logging tracking data with seconds elapsed since… (authored by sattler).
replaced the timestamps when logging tracking data with seconds elapsed since…
Nov 20 2018, 12:24 PM
kleina added a comment to T25437: Evaluate to switch from C3.js to Plotly.js.

image.png (772×605 px, 525 KB)

Nov 20 2018, 11:50 AM · Noteworthy, Restricted Project, MITK
steint added a comment to T25437: Evaluate to switch from C3.js to Plotly.js.

You are right, Plot.ly has something similar which is easy to activate.

Nov 20 2018, 11:47 AM · Noteworthy, Restricted Project, MITK
kleina added a comment to T25437: Evaluate to switch from C3.js to Plotly.js.

I do not think, that the subchart feature is a blocker or even critical. It was very easy to implement with C3 and I personally liked the idea as described above. I assume there is something to achieve that in plotly as well? I'd be happy to discuss this with you in person.

Nov 20 2018, 11:41 AM · Noteworthy, Restricted Project, MITK
hentsch added a comment to T25437: Evaluate to switch from C3.js to Plotly.js.

@steint great work. That already looks really good, thanks!!
Personally, I am no fan of the subchart feature, but see the rationale of @kleina. It is possible without great effort in plotly?

Nov 20 2018, 11:37 AM · Noteworthy, Restricted Project, MITK
steint committed rMITKc706abee129c: subchart added (authored by steint).
subchart added
Nov 20 2018, 9:29 AM

Nov 19 2018

sattler committed rMITKfc5a7ff458af: Merge branch 'T24310-Jun2018' into T24310-Okt2018 (authored by sattler).
Merge branch 'T24310-Jun2018' into T24310-Okt2018
Nov 19 2018, 5:16 PM
sattler committed rMITK1e8724bd377d: fixed oigtl for mutliple outputs (temporary fix) (authored by sattler).
fixed oigtl for mutliple outputs (temporary fix)
Nov 19 2018, 5:16 PM
kleina added a comment to T25437: Evaluate to switch from C3.js to Plotly.js.

The idea behind that feature was, that it should be obvious to the user, that he is only looking at a part of the data. A zoomed view can lead to misinterpretation if the user is not aware of it. At least that is what I thought when I added that feature.

Nov 19 2018, 4:27 PM · Noteworthy, Restricted Project, MITK
steint committed rMITKb594d735aac6: selected chart type is considered from beginning (authored by steint).
selected chart type is considered from beginning
Nov 19 2018, 4:13 PM
steint added a comment to T25437: Evaluate to switch from C3.js to Plotly.js.

Do we need the subchart feature? Maybe the interactive zoom option with plotly is sufficient?

Nov 19 2018, 4:11 PM · Noteworthy, Restricted Project, MITK
steint added a comment to T25437: Evaluate to switch from C3.js to Plotly.js.

Thanks, i will keep an eye on the file size and test it with MP4s ;) hope you like the moving images.

Nov 19 2018, 3:10 PM · Noteworthy, Restricted Project, MITK
kislinsk added a comment to T25437: Evaluate to switch from C3.js to Plotly.js.

FYI: Instead of GIFs you can also use MP4s in Phabricator, which tend to be much smaller in file size while having a decent framerate.

Nov 19 2018, 3:03 PM · Noteworthy, Restricted Project, MITK
kalali committed rMITKd1e287b5f72a: Merge branch 'T23760-Custom-multi-widget-editor' into T23758-New-multi-widget… (authored by kalali).
Merge branch 'T23760-Custom-multi-widget-editor' into T23758-New-multi-widget…
Nov 19 2018, 11:43 AM
kalali added a comment to T23758: Introduction of custom multi widget editor.

Pushed new branch T23758-New-multi-widget-editor.

Nov 19 2018, 11:43 AM · Restricted Project, MITK

Nov 16 2018

hettich committed rMITK129692ef73a4: Fix catch-by-reference, const or not depending on: (authored by hettich).
Fix catch-by-reference, const or not depending on:
Nov 16 2018, 6:45 PM
kalali moved T23758: Introduction of custom multi widget editor from Restricted Project Column to Restricted Project Column on the Restricted Project board.
Nov 16 2018, 5:46 PM · Restricted Project, MITK
kalali added a project to T23758: Introduction of custom multi widget editor: Restricted Project.
Nov 16 2018, 5:46 PM · Restricted Project, MITK
kalali closed T23760: Create first draft of a custom workbench editor, a subtask of T23758: Introduction of custom multi widget editor, as Resolved.
Nov 16 2018, 5:44 PM · Restricted Project, MITK
kalali closed T23760: Create first draft of a custom workbench editor as Resolved.
Nov 16 2018, 5:44 PM · MITK
kalali added a comment to T23760: Create first draft of a custom workbench editor.

First draft has been proven to be working (also with RenderWindowManager, see T25603) and merged into T23758. This task will be closed now and other subtasks will be created from the meta task.

Nov 16 2018, 5:43 PM · MITK
floca added a member for wDB: gaoh.
Nov 16 2018, 5:12 PM
floca removed a member for wDB: diatschu.
Nov 16 2018, 5:11 PM
floca removed a member for wDB: mangsa.
Nov 16 2018, 5:11 PM
floca removed a member for wDB: ajaeger.
Nov 16 2018, 5:11 PM
floca committed rMITK44059aca568f: Fixed T24987 (authored by floca).
Fixed T24987
Nov 16 2018, 12:43 PM
floca committed rMITKb05716c5e6f2: Fixed T24987 (authored by floca).
Fixed T24987
Nov 16 2018, 12:38 PM
floca closed T24987: mitkFunctionGetLibrarySearchPaths is not aware of extensions as Resolved by committing rMITKb05716c5e6f2: Fixed T24987.
Nov 16 2018, 12:37 PM · Restricted Project, MITK