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Jan 27 2021

wiesenfa added a comment to T28193: bug in stabilityByAlgorithm.bootstrap.list.

@eisenman yes, should be sufficient
only one case per task covered in bootstrap() now see T28202

Jan 27 2021, 11:38 AM · challengeR
wiesenfa added a comment to T28202: Error in stabilityByAlgorithm if only one case is used.

bootstrap() now gives error if all tasks only contain 1 test case and a message if some tasks contain only 1 test case (tasks with 1 test case are excluded from bootstrapping)
test-bootstrap.R contains tests. @eisenman could you please check test

Jan 27 2021, 11:32 AM · challengeR
wiesenfa committed rCHALLENGER6bd398e8f0c1: T28202 - bootstrapping 1 test case message/error (authored by wiesenfa).
T28202 - bootstrapping 1 test case message/error
Jan 27 2021, 11:30 AM
wiesenfa committed rCHALLENGERaf8b7633ba1f: tests for bootstrapping with 1 test case (authored by wiesenfa).
tests for bootstrapping with 1 test case
Jan 27 2021, 11:30 AM
wiesenfa committed rCHALLENGER07dfc6359329: error/message if bootstrapping only 1 test case (authored by wiesenfa).
error/message if bootstrapping only 1 test case
Jan 27 2021, 11:30 AM
gaoh added a subtask for T28000: MITK v2021.02: T28127: Reopen segmentation in MITK.
Jan 27 2021, 11:11 AM · MITK-ProjectTemplate, MITK (v2021.02)
gaoh added a parent task for T28127: Reopen segmentation in MITK: T28000: MITK v2021.02.
Jan 27 2021, 11:11 AM · MITK (v2021.02), Restricted Project, Kaapana (internal)
gaoh claimed T28207: MITK DicomBrowser q/r Retrieve part crash.
Jan 27 2021, 10:58 AM · MITK, Checklist
gaoh renamed T28207: MITK DicomBrowser q/r Retrieve part crash from MITK DicomBrowser Query Retrieve to MITK DicomBrowser q/r Retrieve part crash.
Jan 27 2021, 10:55 AM · MITK, Checklist
gaoh triaged T28207: MITK DicomBrowser q/r Retrieve part crash as Normal priority.
Jan 27 2021, 10:55 AM · MITK, Checklist
nolden renamed T28206: [Image Statistics] Renaming segmentation or planar figure based ROI nodes breaks histogram from Renaming segmentation or planar figure based ROI nodes break histogram to Renaming segmentation or planar figure based ROI nodes breaks histogram.
Jan 27 2021, 10:50 AM · MITK (v2024.12)
nolden triaged T28206: [Image Statistics] Renaming segmentation or planar figure based ROI nodes breaks histogram as Unbreak Now! priority.
Jan 27 2021, 10:50 AM · MITK (v2024.12)
wiesenfa claimed T28202: Error in stabilityByAlgorithm if only one case is used.
Jan 27 2021, 10:08 AM · challengeR
wiesenfa moved T28202: Error in stabilityByAlgorithm if only one case is used from Backlog to In Progress on the challengeR board.
Jan 27 2021, 10:08 AM · challengeR
kislinsk placed T28205: [View Navigator] View names in do not update their appearance when opened/closed up for grabs.
Jan 27 2021, 9:49 AM · Next Milestone, MITK
kislinsk triaged T28205: [View Navigator] View names in do not update their appearance when opened/closed as Low priority.
Jan 27 2021, 9:49 AM · Next Milestone, MITK
nolden added a comment to T27578: 2021.1 Linux installer does not work on Fedora.

Additional comment: the missing library doesn't prevent the Workbench from starting, but some/all DICOM functionality is missing which can be confusing

Jan 27 2021, 9:22 AM · MITK (v2022.10)
nolden raised the priority of T27578: 2021.1 Linux installer does not work on Fedora from High to Unbreak Now!.
Jan 27 2021, 9:18 AM · MITK (v2022.10)
nolden added a comment to T27578: 2021.1 Linux installer does not work on Fedora.

Ok, I just re-checked: Ubuntu 20.04 still has librwrap installed , so installer works. For Fedora there is no workaround , so either

Jan 27 2021, 9:18 AM · MITK (v2022.10)
nolden renamed T27578: 2021.1 Linux installer does not work on Fedora from Make sure libwrap isn't linked anymore to 2021.1 Linux installer does not work on Fedora.
Jan 27 2021, 9:18 AM · MITK (v2022.10)
nolden added a parent task for T27578: 2021.1 Linux installer does not work on Fedora: T28000: MITK v2021.02.
Jan 27 2021, 9:00 AM · MITK (v2022.10)
nolden added a subtask for T28000: MITK v2021.02: T27578: 2021.1 Linux installer does not work on Fedora.
Jan 27 2021, 9:00 AM · MITK-ProjectTemplate, MITK (v2021.02)
floca claimed T28203: [Segmentation] 2-d correction tool does not work anymore and should be removed.
Jan 27 2021, 8:35 AM · MITK (v2021.02)

Jan 26 2021

kalali triaged T28204: Refactor LevelWindowManagerTest as High priority.
Jan 26 2021, 9:31 PM · MITK (v2021.10)
eisenman added a comment to T28193: bug in stabilityByAlgorithm.bootstrap.list.

The unit tests can be found here: feature/T28193-UnitTestsMoreTasksThanAlgorithms

Jan 26 2021, 8:46 PM · challengeR
eisenman committed rCHALLENGER88533dcc2c22: Test that stacked frequency plot for visualizing ranking stability by algorithm… (authored by eisenman).
Test that stacked frequency plot for visualizing ranking stability by algorithm…
Jan 26 2021, 8:35 PM
eisenman committed rCHALLENGERe1cfc864d52c: Test that PDF report for multi-task data set with bootstrapping is created… (authored by eisenman).
Test that PDF report for multi-task data set with bootstrapping is created…
Jan 26 2021, 8:35 PM
eisenman committed rCHALLENGEReea8960f2cd0: Test that stacked bar plot for visualizing ranking stability by algorithm… (authored by eisenman).
Test that stacked bar plot for visualizing ranking stability by algorithm…
Jan 26 2021, 8:35 PM
eisenman committed rCHALLENGERecd51e31c4e3: Test that stacked frequency plot for visualizing ranking stability by algorithm… (authored by eisenman).
Test that stacked frequency plot for visualizing ranking stability by algorithm…
Jan 26 2021, 8:35 PM
eisenman committed rCHALLENGER28b8d1693b58: Test that stacked bar plot for visualizing ranking stability by algorithm… (authored by eisenman).
Test that stacked bar plot for visualizing ranking stability by algorithm…
Jan 26 2021, 8:35 PM
eisenman committed rCHALLENGERc2b0873eb0f3: Test that blob plot for visualizing ranking stability by algorithm returns one… (authored by eisenman).
Test that blob plot for visualizing ranking stability by algorithm returns one…
Jan 26 2021, 8:35 PM
eisenman committed rCHALLENGER8d0b5eeeee9b: Test that blob plot for visualizing ranking stability by algorithm returns one… (authored by eisenman).
Test that blob plot for visualizing ranking stability by algorithm returns one…
Jan 26 2021, 8:35 PM
kislinsk renamed T28203: [Segmentation] 2-d correction tool does not work anymore and should be removed from [Segmentation] 2-d correction tools does not work anymore to [Segmentation] 2-d correction tool does not work anymore.
Jan 26 2021, 8:14 PM · MITK (v2021.02)
kislinsk triaged T28203: [Segmentation] 2-d correction tool does not work anymore and should be removed as Unbreak Now! priority.
Jan 26 2021, 8:13 PM · MITK (v2021.02)
eisenman moved T28193: bug in stabilityByAlgorithm.bootstrap.list from Done to In Progress on the challengeR board.

I will extend the unit tests to show that this issue is solved.

Jan 26 2021, 8:04 PM · challengeR
kislinsk renamed MITK (v2021.02) from 2020 to v2021.01.
Jan 26 2021, 8:02 PM
eisenman triaged T28202: Error in stabilityByAlgorithm if only one case is used as High priority.
Jan 26 2021, 8:00 PM · challengeR
kislinsk added a comment to T28000: MITK v2021.02.

Is there something we should take care of in the future when writing commit messages or writing differential summaries? Or is this something we can not avoid and has to be done when combining everything for the regular changelog?

Jan 26 2021, 7:58 PM · MITK-ProjectTemplate, MITK (v2021.02)
eisenman closed T27867: report corrections as Resolved.
Jan 26 2021, 4:22 PM · challengeR (v1.0)
eisenman edited projects for T27867: report corrections, added: challengeR (v1.0); removed challengeR.
Jan 26 2021, 4:22 PM · challengeR (v1.0)
eisenman closed T27832: Complete troublshooting as Resolved.
Jan 26 2021, 4:21 PM · challengeR (v1.0)
eisenman edited projects for T27832: Complete troublshooting, added: challengeR (v1.0); removed challengeR.
Jan 26 2021, 4:21 PM · challengeR (v1.0)
eisenman moved T28201: Avoid blank pages in report from In Progress to Done on the challengeR board.
Jan 26 2021, 4:19 PM · challengeR
eisenman committed rCHALLENGERd5de45f65829: Merge branch 'feature/T28201-FixPageBreak' into develop (authored by eisenman).
Merge branch 'feature/T28201-FixPageBreak' into develop
Jan 26 2021, 4:08 PM
eisenman committed rCHALLENGER95a457406a7c: Fix page break (authored by eisenman).
Fix page break
Jan 26 2021, 4:06 PM
eisenman moved T28201: Avoid blank pages in report from Backlog to In Progress on the challengeR board.
Jan 26 2021, 4:02 PM · challengeR
eisenman triaged T28201: Avoid blank pages in report as Low priority.
Jan 26 2021, 4:02 PM · challengeR
kalali added a comment to T28000: MITK v2021.02.

I noticed that simply merging all the changelogs section-wise doesn't work out very well and generates an overwhelming document probably noone is going to read. I propose the following for the release changelog:

  • Merge the thirdparty dependency update table (simple)
  • Focus on feature and bugfix oneliners and reference the original changelog if there is more related information
  • Roughly sort them by importance/shinyness
  • List references to original changelogs with API-breaking changes but explicitly mark the "big ones" that have migration hints/guides
Jan 26 2021, 2:32 PM · MITK-ProjectTemplate, MITK (v2021.02)
kislinsk updated the task description for T28000: MITK v2021.02.
Jan 26 2021, 1:39 PM · MITK-ProjectTemplate, MITK (v2021.02)
s669m closed T28165: TFDA Repo Creation, a subtask of T28175: TFDA MVP v1, as Resolved.
Jan 26 2021, 1:37 PM · Restricted Project
s669m closed T28165: TFDA Repo Creation as Resolved.

TFDA mvp0 code has been moved to a feature branch under kaapana-internal

Jan 26 2021, 1:37 PM · Restricted Project
s669m renamed T28175: TFDA MVP v1 from TFDA MVP v2 to TFDA MVP v1.
Jan 26 2021, 1:27 PM · Restricted Project
m113r added a watcher for LSF GPU Cluster Monitoring: m113r.
Jan 26 2021, 11:51 AM
kislinsk updated the task description for T28000: MITK v2021.02.
Jan 26 2021, 11:06 AM · MITK-ProjectTemplate, MITK (v2021.02)
kislinsk updated the task description for T28000: MITK v2021.02.
Jan 26 2021, 10:20 AM · MITK-ProjectTemplate, MITK (v2021.02)
floca added a comment to T28000: MITK v2021.02.

The change log proposal sounds reasonable to me.

Jan 26 2021, 9:45 AM · MITK-ProjectTemplate, MITK (v2021.02)
kislinsk added a comment to T28000: MITK v2021.02.

I noticed that simply merging all the changelogs section-wise doesn't work out very well and generates an overwhelming document probably noone is going to read. I propose the following for the release changelog:

Jan 26 2021, 8:08 AM · MITK-ProjectTemplate, MITK (v2021.02)

Jan 25 2021

kislinsk edited the content of 2021 Week 04 (Very Late January).
Jan 25 2021, 9:51 PM
kislinsk added inline comments to rRTTB785b6a0cf924: Fixed linker problems on windows with Boost >1.74.
Jan 25 2021, 9:41 PM
kalali awarded T28118: Refactoring of SegTool2D a Party Time token.
Jan 25 2021, 9:21 PM · MITK (v2021.02)
floca committed rRTTB785b6a0cf924: Fixed linker problems on windows with Boost >1.74 (authored by floca).
Fixed linker problems on windows with Boost >1.74
Jan 25 2021, 9:20 PM
kislinsk updated the task description for T28000: MITK v2021.02.
Jan 25 2021, 9:15 PM · MITK-ProjectTemplate, MITK (v2021.02)
kislinsk added a comment to T28000: MITK v2021.02.

Pushed new branch to rMITK MITK: release/T28000-v2021.01.

Jan 25 2021, 9:05 PM · MITK-ProjectTemplate, MITK (v2021.02)
kislinsk added a comment to T28000: MITK v2021.02.
Jan 25 2021, 9:05 PM · MITK-ProjectTemplate, MITK (v2021.02)
kislinsk added a comment to T28000: MITK v2021.02.

Pushed new branch to rMPT MITK-ProjectTemplate: release/T28000-v2021.01.

Jan 25 2021, 9:04 PM · MITK-ProjectTemplate, MITK (v2021.02)
kislinsk added a comment to T28000: MITK v2021.02.
Jan 25 2021, 9:02 PM · MITK-ProjectTemplate, MITK (v2021.02)
kislinsk renamed T28000: MITK v2021.02 from 28000 to MITK v2021.01.
Jan 25 2021, 9:00 PM · MITK-ProjectTemplate, MITK (v2021.02)
kislinsk changed the edit policy for LSF GPU Cluster Monitoring.
Jan 25 2021, 8:32 PM
kislinsk created LSF GPU Cluster Monitoring.
Jan 25 2021, 8:24 PM
wiesenfa added a comment to T28193: bug in stabilityByAlgorithm.bootstrap.list.

task names ( names(x$matlist) ) had been used for facet titles instead of algorithm names ( stored in "ordering").

Jan 25 2021, 7:40 PM · challengeR
eisenman added a comment to T28193: bug in stabilityByAlgorithm.bootstrap.list.

What exactly is the error? What are the steps to reproduce this? Runtime error or wrong content in report?

Jan 25 2021, 6:32 PM · challengeR
kislinsk edited the content of 2021 Week 04 (Very Late January).
Jan 25 2021, 5:54 PM
kislinsk closed T28197: 2021 Week 04 (Very Late January) as Resolved.
Jan 25 2021, 5:43 PM · MITK (v2021.02)
kislinsk edited the content of Changelog.
Jan 25 2021, 5:43 PM · MITK
kislinsk added a comment to T28197: 2021 Week 04 (Very Late January).

Deleted branch from rMITK MITK: release/T28197-2021-Week-04.

Jan 25 2021, 5:42 PM · MITK (v2021.02)
kislinsk committed rMITK3ec0dd08e0e6: Merge branch 'master' into develop (authored by kislinsk).
Merge branch 'master' into develop
Jan 25 2021, 5:41 PM
kislinsk committed rMITKfa1ae3c6a57a: 2021 Week 04 (Very Late January) (authored by kislinsk).
2021 Week 04 (Very Late January)
Jan 25 2021, 5:41 PM
kislinsk added a comment to T28197: 2021 Week 04 (Very Late January).

Pushed new branch to rMITK MITK: release/T28197-2021-Week-04.

Jan 25 2021, 5:33 PM · MITK (v2021.02)
kislinsk triaged T28197: 2021 Week 04 (Very Late January) as Normal priority.
Jan 25 2021, 5:31 PM · MITK (v2021.02)
floca closed T28118: Refactoring of SegTool2D as Resolved.

Fixed with D450

Jan 25 2021, 4:53 PM · MITK (v2021.02)
floca closed T26975: 2D Fast Marching for 4D data intermediate state displays segmentation in other timesteps, a subtask of T28118: Refactoring of SegTool2D, as Resolved.
Jan 25 2021, 4:52 PM · MITK (v2021.02)
floca closed T26975: 2D Fast Marching for 4D data intermediate state displays segmentation in other timesteps, a subtask of T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation, as Resolved.
Jan 25 2021, 4:52 PM · MITK (v2021.10), Missing Info, Restricted Project
floca closed T26975: 2D Fast Marching for 4D data intermediate state displays segmentation in other timesteps as Resolved.

Fixed with T28118 (D450)

Jan 25 2021, 4:52 PM · Missing Info, MITK (v2021.02)
kislinsk closed T28174: Fix minor C++ style issues as Resolved.
Jan 25 2021, 4:16 PM · MITK
nolden committed rMITKe02f5dfbc3b2: Summary: Applied some C++ style fixes (authored by nolden).
Summary: Applied some C++ style fixes
Jan 25 2021, 4:14 PM
nolden committed rMITK9fea04d2ed70: Applied some automated const FixIts to range-based loops (authored by nolden).
Applied some automated const FixIts to range-based loops
Jan 25 2021, 4:14 PM
nolden committed rMITK265001cf6a94: Added assignment operator to mitk::Vector (authored by nolden).
Added assignment operator to mitk::Vector
Jan 25 2021, 4:14 PM
floca committed rMITKb6352d695ed7: T28118 Refactor SegTool2D and derived classes (1st batch) (authored by floca).
T28118 Refactor SegTool2D and derived classes (1st batch)
Jan 25 2021, 4:02 PM
floca committed rMITK08a93f52a64d: Fixed review remarks. (authored by floca).
Fixed review remarks.
Jan 25 2021, 4:02 PM
floca committed rMITK71ec4042604b: Fixed review remarks. (authored by floca).
Fixed review remarks.
Jan 25 2021, 4:02 PM
floca committed rMITK92f6b39de002: Fixed missing export statement (authored by floca).
Fixed missing export statement
Jan 25 2021, 4:02 PM
floca committed rMITK0f4f7a637fc7: Fixed review remarks (authored by floca).
Fixed review remarks
Jan 25 2021, 4:02 PM
floca committed rMITKe9d3294313ef: Fixed review remarks (authored by floca).
Fixed review remarks
Jan 25 2021, 4:02 PM
floca committed rMITK3f20a6c350a0: fixed gcc/clang compiler issues (authored by floca).
fixed gcc/clang compiler issues
Jan 25 2021, 4:02 PM
floca committed rMITKff566295e723: Added missed explicit Point conversions (gcc complaint) (authored by floca).
Added missed explicit Point conversions (gcc complaint)
Jan 25 2021, 4:02 PM
floca committed rMITK5dfc1cc4a570: Fixed bug in ContourModel::AddVertex (authored by floca).
Fixed bug in ContourModel::AddVertex
Jan 25 2021, 4:02 PM
floca committed rMITK5fa4514a9658: Fixed implicit mitk::Point conversions in code base (that where issued by gcc). (authored by floca).
Fixed implicit mitk::Point conversions in code base (that where issued by gcc).
Jan 25 2021, 4:02 PM
floca committed rMITK7d2784676c44: Fixed all implicit mitk::Point conversions in code base. (authored by floca).
Fixed all implicit mitk::Point conversions in code base.
Jan 25 2021, 4:02 PM
floca committed rMITK8ebd602023cf: Fixed gcc compile errors (authored by floca).
Fixed gcc compile errors
Jan 25 2021, 4:02 PM
floca committed rMITK34fd4b11f4d8: Fixed review remarks (authored by floca).
Fixed review remarks
Jan 25 2021, 4:02 PM