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Mon, Sep 16

kislinsk closed T30435: Rename "Time" to "Timestep" in Image Navigator? as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist
kislinsk closed T30428: DCE MR Perfusion DataFit View: Selected Mask widget can't find DICOM segmentation nodes as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30429: Bounding box Corner control as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist
kislinsk closed T30434: [Perfusion] Concentration curve converter VFA box tab key skips flip angles as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist
kislinsk closed T30432: [Perfusion] Possible to write text into info box as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30450: [MxN] Visibility of label-nodes is confusing in unlocked windows as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, Checklist, MITK
kislinsk closed T30454: IO Support for Blosc2 as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30441: [Perfusion] Baseline range bug for variable flip angle conversion as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist
kislinsk closed T30446: Decouple Workbench plugin from optional views as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30440: [Perfusion] Error when loading AIF from csv file in DCE MR Perfusion DataFit View as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist
kislinsk closed T30439: [Perfusion] Only a selection of debug parameter images generated as sub-nodes as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion, Checklist
kislinsk closed T30487: Setup unit testing script for pyMITK as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30480: Installation 'agent' for Totalsegmentator, a subtask of T30479: [Seg] Totalseg and SAM/MedSAM tool fails, as Resolved.
Mon, Sep 16, 1:48 PM · MITK
kislinsk closed T30490: [Seg] Add Support TotalSegmentator >= v2.3 as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30487: Setup unit testing script for pyMITK, a subtask of T30361: [Py] pyMITK package to use MITK in a python environement, as Resolved.
Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30480: Installation 'agent' for Totalsegmentator as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, Request for Discussion, MITK
kislinsk closed T30494: Standard Display F1 help - missing content as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30509: [Seg] MedSAM2 in MITK as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30508: [Totalseg] Enable licenced tasks in the tool as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30516: Update list of available MiniApps in MITK documentation as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T27190: Clang format style for * and & at variables as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, Request for Discussion, MITK
kislinsk closed T30517: Remove suffix "MiniApp" from Pharmacokinetics mini apps as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T27190: Clang format style for * and & at variables, a subtask of T24402: Improve clang-format support, as Resolved.
Mon, Sep 16, 1:48 PM · Auto-closed, MITK
kislinsk closed T30515: OSIPI-suggested xml file in DCE MRI and Generic DataFit View as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T28561: Refactor/Fix mitk::SegmentationInteractor::ChangeActiveLabel as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T28561: Refactor/Fix mitk::SegmentationInteractor::ChangeActiveLabel, a subtask of T28524: Refactor LabelSetImage and associated classes., as Resolved.
Mon, Sep 16, 1:48 PM · MITK, Next Milestone
kislinsk closed T29322: [SEG] Refactor code to avoid FillSliceInSlice and FillContourInSlice as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T27413: MITK Workflow Q&A as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK, Request for Discussion
kislinsk closed T28237: Refactor QmitkChart as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29392: [SEG] Add dedicated writer to store multi-label images in nifti as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29483: [Segmentation] Gracefully handle out of memory situations as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29553: Include label instances in label set presets as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T29392: [SEG] Add dedicated writer to store multi-label images in nifti, a subtask of T29495: [SEG] Rework segmentation view UX, as Resolved.
Mon, Sep 16, 1:48 PM · MITK (v2023.12)
kislinsk closed T29479: Planar figures do not work as expected on arbitrarily oriented slices as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30158: [DCM][SEG] Check why unittests did not detect breaking support of DCM Seg and fix the (unit) test as Resolved.

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Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30170: [Py] Python in MITK as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30158: [DCM][SEG] Check why unittests did not detect breaking support of DCM Seg and fix the (unit) test, a subtask of T30157: [DCM][SEG] potential in compliance to DICOM segmentation: clarify correct use of pixel value/segment number, as Resolved.
Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Missing Info, Request for Discussion
kislinsk closed T30362: [Py] UC2.1 - Load images and save again as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30180: [Statistics] Median is approximated and completely off if sample size is small as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30362: [Py] UC2.1 - Load images and save again, a subtask of T30361: [Py] pyMITK package to use MITK in a python environement, as Resolved.
Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30363: [Py] UC2.4 - Load image and clone it as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30361: [Py] pyMITK package to use MITK in a python environement as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30363: [Py] UC2.4 - Load image and clone it, a subtask of T30361: [Py] pyMITK package to use MITK in a python environement, as Resolved.
Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30361: [Py] pyMITK package to use MITK in a python environement, a subtask of T30170: [Py] Python in MITK, as Resolved.
Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK
kislinsk closed T30375: [Statistics] Remove HotspotMaskGenerator or rework and fix tests as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30512: [SEG] Allow custom label group names as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30468: [Segmentation] Changing first label in Boolean Operations is hard as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk closed T30157: [DCM][SEG] potential in compliance to DICOM segmentation: clarify correct use of pixel value/segment number as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK (v2024.12), Missing Info, Request for Discussion
kislinsk closed T30514: Make MITK Forms available in Segmentation Task Lists as Resolved.

This task was closed here on Phabricator since it was migrated to GitLab. Please continue on GitLab.

Mon, Sep 16, 1:48 PM · Moved to git.dkfz.de, MITK
kislinsk placed T30492: Ask for saving on exit of MITK Workbench up for grabs.
Mon, Sep 16, 1:20 PM · Moved to git.dkfz.de, MITK
kislinsk updated the task description for T30160: Move MITK to our GitLab instance.
Mon, Sep 16, 11:10 AM · Moved to git.dkfz.de, MITK (v2024.12)

Thu, Sep 12

kompan triaged T30517: Remove suffix "MiniApp" from Pharmacokinetics mini apps as Normal priority.
Thu, Sep 12, 10:51 AM · Moved to git.dkfz.de, MITK (v2024.12)
kompan triaged T30516: Update list of available MiniApps in MITK documentation as Normal priority.
Thu, Sep 12, 10:44 AM · Moved to git.dkfz.de, MITK (v2024.12)

Wed, Sep 11

floca moved T30328: Failure when loading DICOM files with missing series instance UID from Backlog to Cycle on the MITK (v2024.12) board.
Wed, Sep 11, 3:54 PM · Moved to git.dkfz.de, MITK (v2024.12)
floca added a comment to T30328: Failure when loading DICOM files with missing series instance UID.

@s434n do you have an example case? One needs to check, if it is the same spote in the call tree (and therefor the same solution) or if your point should be a different ticket.

Wed, Sep 11, 3:54 PM · Moved to git.dkfz.de, MITK (v2024.12)
a178n closed T30506: [Seg] Introduce time out for MONAILabel in Preferences as Resolved.

Time out was added and documentation was updated.

Wed, Sep 11, 11:26 AM · MITK (v2024.12)
a178n added a revision to T30506: [Seg] Introduce time out for MONAILabel in Preferences: Unknown Object (Differential Revision).
Wed, Sep 11, 11:25 AM · MITK (v2024.12)
a178n committed rMITK736f97933922: Add time out setting for Monailabel tool (authored by a178n).
Add time out setting for Monailabel tool
Wed, Sep 11, 11:24 AM
a178n committed rMITKc47dcac0c832: Update MONAI timeout documentation (authored by a178n).
Update MONAI timeout documentation
Wed, Sep 11, 11:24 AM
a178n committed rMITK3ccaf9258efc: Add time out setting for Monailabel (authored by a178n).
Add time out setting for Monailabel
Wed, Sep 11, 11:24 AM
kompan moved T30515: OSIPI-suggested xml file in DCE MRI and Generic DataFit View from Backlog to Cycle on the MITK (v2024.12) board.
Wed, Sep 11, 9:44 AM · Moved to git.dkfz.de, MITK (v2024.12)
kompan triaged T30515: OSIPI-suggested xml file in DCE MRI and Generic DataFit View as Normal priority.
Wed, Sep 11, 9:43 AM · Moved to git.dkfz.de, MITK (v2024.12)
kislinsk added a comment to T30514: Make MITK Forms available in Segmentation Task Lists.

Pushed new branch to rMITK MITK: feature/T30514-FormsInSegTaskLists.

Wed, Sep 11, 8:49 AM · Moved to git.dkfz.de, MITK
kislinsk added a comment to T30514: Make MITK Forms available in Segmentation Task Lists.
Wed, Sep 11, 8:48 AM · Moved to git.dkfz.de, MITK
kislinsk added a comment to T30514: Make MITK Forms available in Segmentation Task Lists.
Wed, Sep 11, 8:47 AM · Moved to git.dkfz.de, MITK
kislinsk triaged T30514: Make MITK Forms available in Segmentation Task Lists as High priority.
Wed, Sep 11, 8:47 AM · Moved to git.dkfz.de, MITK
kislinsk added a comment to T30497: MITK Forms.

Deleted branch from rMITK MITK: feature/T30497-MITKForms.

Wed, Sep 11, 8:46 AM · MITK
kislinsk committed rMITKc7f8764cff3c: Add initial version of MitkFormsUI module (authored by kislinsk).
Add initial version of MitkFormsUI module
Wed, Sep 11, 8:45 AM
kislinsk committed rMITK963d1b22dc5e: Add initial version of MitkForms module (authored by kislinsk).
Add initial version of MitkForms module
Wed, Sep 11, 8:45 AM
kislinsk committed rMITKfc2bb7ff4844: Add Forms Example plugin (authored by kislinsk).
Add Forms Example plugin
Wed, Sep 11, 8:45 AM
kislinsk committed rMITK41060cb28fec: Fix flat buttons and box-shaped frames in dark style (authored by kislinsk).
Fix flat buttons and box-shaped frames in dark style
Wed, Sep 11, 8:45 AM
kislinsk committed rMITKb91a957028f1: Add Form field to SegmentationTaskList (authored by kislinsk).
Add Form field to SegmentationTaskList
Wed, Sep 11, 8:45 AM
kislinsk committed rMITK65128d80496d: Clean up class design of QuestionWithOptions (authored by kislinsk).
Clean up class design of QuestionWithOptions
Wed, Sep 11, 8:45 AM
kislinsk committed rMITKfe05e2c34e05: Replace deprecated Qt functionality (authored by kislinsk).
Replace deprecated Qt functionality
Wed, Sep 11, 8:45 AM
kislinsk committed rMITKd525f12fa8d4: Add documentation to Question class (authored by kislinsk).
Add documentation to Question class
Wed, Sep 11, 8:45 AM
kislinsk committed rMITK353712e32028: Add more documentation (authored by kislinsk).
Add more documentation
Wed, Sep 11, 8:45 AM
kislinsk committed rMITK6c9f0a350414: Fix formatting (authored by kislinsk).
Fix formatting
Wed, Sep 11, 8:45 AM
kislinsk committed rMITK825e1a46a15f: Fix typo (authored by kislinsk).
Fix typo
Wed, Sep 11, 8:45 AM
kislinsk committed rMITKa40f5910c4f6: Simplify response handling by using std::set instead of std::vector (authored by kislinsk).
Simplify response handling by using std::set instead of std::vector
Wed, Sep 11, 8:45 AM
kislinsk committed rMITKb19c0760293b: Add documentation (authored by kislinsk).
Add documentation
Wed, Sep 11, 8:45 AM
kislinsk committed rMITK6b482bfd0a37: Return the index of newly added options (authored by kislinsk).
Return the index of newly added options
Wed, Sep 11, 8:45 AM
kislinsk committed rMITK5de14cf2bcec: Refactor Submit() method into SubmitToCSV() free function (authored by kislinsk).
Refactor Submit() method into SubmitToCSV() free function
Wed, Sep 11, 8:45 AM
kislinsk committed rMITKd91af80e16d8: Add range-based for loop compatible iteration interface for sections (authored by kislinsk).
Add range-based for loop compatible iteration interface for sections
Wed, Sep 11, 8:45 AM
kislinsk closed T30497: MITK Forms as Resolved by committing rMITK22c6ad7a5e4a: MITK Forms.
Wed, Sep 11, 8:45 AM · MITK
kislinsk committed rMITK22c6ad7a5e4a: MITK Forms (authored by kislinsk).
MITK Forms
Wed, Sep 11, 8:45 AM

Tue, Sep 10

s434n closed T30513: Remove MiniApp suffix from MitkFuse3Dto4DImage as Invalid.
Tue, Sep 10, 5:03 PM · MITK (v2024.12)
s434n triaged T30513: Remove MiniApp suffix from MitkFuse3Dto4DImage as Normal priority.
Tue, Sep 10, 5:00 PM · MITK (v2024.12)
s434n added a comment to T30328: Failure when loading DICOM files with missing series instance UID.

Maybe some extension: it would be nice if a warning could be general for incomplete DICOM files. I recently had a different case where the modality was missing, and at the moment it is quite difficult to figure out what information is missing since there is just a crash with little information.
So if we add a warning here, maybe it could be in a way that works for any required DICOM tags that are missing.

Tue, Sep 10, 10:55 AM · Moved to git.dkfz.de, MITK (v2024.12)

Mon, Sep 9

kompan moved T30439: [Perfusion] Only a selection of debug parameter images generated as sub-nodes from Backlog to Cycle on the MITK (v2024.12) board.
Mon, Sep 9, 1:25 PM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion, Checklist
kompan moved T30441: [Perfusion] Baseline range bug for variable flip angle conversion from Backlog to Cycle on the MITK (v2024.12) board.
Mon, Sep 9, 1:25 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist
kompan moved T30440: [Perfusion] Error when loading AIF from csv file in DCE MR Perfusion DataFit View from Backlog to Cycle on the MITK (v2024.12) board.
Mon, Sep 9, 1:25 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist
kompan moved T30434: [Perfusion] Concentration curve converter VFA box tab key skips flip angles from Backlog to Cycle on the MITK (v2024.12) board.
Mon, Sep 9, 1:24 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist
kompan moved T30433: [Perfusion] Inconsistent appearance of info box message "Cannot compute parameters. No node selected." from Backlog to Cycle on the MITK (v2024.12) board.
Mon, Sep 9, 1:24 PM · Moved to git.dkfz.de, MITK (v2024.12)
kompan moved T30432: [Perfusion] Possible to write text into info box from Backlog to Cycle on the MITK (v2024.12) board.
Mon, Sep 9, 1:24 PM · Moved to git.dkfz.de, MITK (v2024.12)
kompan moved T26288: MRI Perfusion view should only generate concentration images once from Backlog to Cycle on the MITK (v2024.12) board.
Mon, Sep 9, 1:23 PM · Moved to git.dkfz.de, MITK (v2024.12)
kompan moved T30296: [Perfusion] Concentration Curve Converter view does not hide options when deselecting 3D/4D from Backlog to Cycle on the MITK (v2024.12) board.
Mon, Sep 9, 1:22 PM · Moved to git.dkfz.de, MITK (v2024.12)
kompan moved T30436: [Perfusion] Checkbox for Start Parameters instead of radio button from Backlog to Cycle on the MITK (v2024.12) board.
Mon, Sep 9, 1:12 PM · Moved to git.dkfz.de, MITK (v2024.12), Checklist
kompan moved T30204: Improve visibility between help files for perfusion from Backlog to Cycle on the MITK (v2024.12) board.
Mon, Sep 9, 1:10 PM · Moved to git.dkfz.de, MITK (v2024.12), Request for Discussion
kompan closed T29638: ModelFit Inspector crahes sometimes on data selection as Resolved.

At least for me the crash hasn't occured for a long time (I believe since around the 2023.12 release) despite working using the ModelFitInspectorView very often. So the bug might have been resolved along with another fix "accidendally". I will close the task for now, however, should the error re-appear, the task can be re-opened.

Mon, Sep 9, 1:09 PM · MITK (v2024.12)

Fri, Sep 6

kislinsk added a revision to T30497: MITK Forms: Unknown Object (Differential Revision).
Fri, Sep 6, 9:10 AM · MITK
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