We think that people in the real world do not use the smoothing options at all and checking for their impact revealed that they seem to have no effect at all in most cases. We decided to remove the options from the preferences. In addition, there's a message in the terminal when no smoothed mesh could be created which is the case for some single-slice segmentations. It even suggests to try again without smoothing. However, this should probably be a more prominent feedback as message box for example.
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Oct 13 2022
Oct 13 2022
kislinsk added a project to T29352: Segmentation Options Checklist - "Create Smoothed Polygon" Seems Not to Work: Cleared.
kislinsk added a comment to T29344: Image Rendering - No difference between "Jet" and "Jet Transparent".
We should double-check if there's really a bug as there's a good chance that it was just misunderstood how it works. Everything that's not covered by the level window is supposed to be transparent. We should probably improve the checklist to be more clear.
kislinsk added a project to T29357: [Segmentation] Tools can be activated without selected label: Checklist.
kislinsk triaged T29357: [Segmentation] Tools can be activated without selected label as Unbreak Now! priority.
Oct 12 2022
Oct 12 2022
kislinsk added a revision to T29338: "Rename Label" window improvements: Unknown Object (Differential Revision).
In T29338#242672, @floca wrote:One question. The current implementation has always standard suggestions and the custom suggestions are added. I am wondering it wouldn't be better if in case of custom suggestions are given, only the custom suggestions appear.
E.g. with the current logic we would be able to allow people define a study that only contain special custom suggestions and not the standard ones, would we?
Pushed new branch to rMITK MITK: bugfix/T29338-RenameLabelWindowImprovements.
kislinsk raised the priority of T29354: Double-clicking a label jumps to the label but not its centroid from Low to Normal.
kislinsk triaged T29354: Double-clicking a label jumps to the label but not its centroid as Low priority.
Oct 11 2022
Oct 11 2022
Deleted branch from rMITK MITK: bugfix/T29332-QtWebEngineIssuesOnLinux.
Fix in-app web pages on Ubuntu 22.04
kislinsk committed rMITK310fc4812483: Merge branch 'bugfix/T29332-QtWebEngineIssuesOnLinux' into develop (authored by kislinsk).
Merge branch 'bugfix/T29332-QtWebEngineIssuesOnLinux' into develop
Pushed new branch to rMITK MITK: bugfix/T29332-QtWebEngineIssuesOnLinux.
kislinsk moved T29332: Welcome and help pages are not shown on Ubuntu 22.04 from Segmentation to Cycle on the MITK (v2022.10) board.
Oct 10 2022
Oct 10 2022
kislinsk renamed T29342: Workbench reports excessive RAM usage on MacOSX Monterey from Starting error message on MacOSX Monterey for MitkWorkbench to Workbench reports excessive RAM usage on MacOSX Monterey.
The last part with the high physical memory however *is* an issue. I reopen and rename this task.
This is as expected, since we are not an officially proven developer by Apple.
We may even be able to do it in code, according to the Qt documentation: QTWEBENGINE_CHROMIUM_FLAGS can also be set using {qputenv} from within the application if called before QtWebEngineQuick::initialize().
QTWEBENGINE_DISABLE_SANDBOX=1 is equal to QTWEBENGINE_CHROMIUM_FLAGS="--no-sandbox". While trying to debug the issue, I noticed that the following workaround to have the WebEngine renderer and plugins in the same process as the browser works as well: QTWEBENGINE_CHROMIUM_FLAGS="--single-process". It is and sounds less scary compared to disabling the sandbox. As a fix, we could change our start shell scripts on Linux to set the environment variable for the call of the application.
Deleted branch from rMITK MITK: bugfix/T29339-F1ContextHelpViewNavigator.
Fix View Navigator plugin manual name
kislinsk committed rMITKbeb3e30c7702: Merge branch 'bugfix/T29339-F1ContextHelpViewNavigator' into develop (authored by kislinsk).
Merge branch 'bugfix/T29339-F1ContextHelpViewNavigator' into develop
kislinsk renamed T29339: Context help (F1) of View Navigator points to blank page from Context help (F1) of View Navigator and all Help views are not opened (blank page) to Context help (F1) of View Navigator points to blank page.
Pushed new branch to rMITK MITK: bugfix/T29339-F1ContextHelpViewNavigator.
kislinsk triaged T29339: Context help (F1) of View Navigator points to blank page as Normal priority.
Oct 8 2022
Oct 8 2022
kislinsk added a comment to T29334: Error on saving an MITK scene file with an empty surface, results in crash when loading the scene file again.
Deleted branch from rMITK MITK: bugfix/T29334-ImproveSurfaceVtkWriterTest.
Improve SurfaceVTKWriter test
kislinsk committed rMITKd33e611bc4d8: Merge branch 'bugfix/T29334-ImproveSurfaceVtkWriterTest' into develop (authored by kislinsk).
Merge branch 'bugfix/T29334-ImproveSurfaceVtkWriterTest' into develop
kislinsk added a comment to T29334: Error on saving an MITK scene file with an empty surface, results in crash when loading the scene file again.
Pushed new branch to rMITK MITK: bugfix/T29334-ImproveSurfaceVtkWriterTest.
Oct 7 2022
Oct 7 2022
kislinsk added a comment to T29334: Error on saving an MITK scene file with an empty surface, results in crash when loading the scene file again.
Deleted branch from rMITK MITK: bugfix/T29334-MakeSceneSavingAndLoadingMoreRobust.
kislinsk committed rMITKf0174b79a7d3: Treat an empty filename for data as error (authored by kislinsk).
Treat an empty filename for data as error
kislinsk committed rMITKe5b9f644d75f: Recognize data tag with empty file attribute as error (authored by kislinsk).
Recognize data tag with empty file attribute as error
Relax check for empty time steps
kislinsk committed rMITKa246dbac0379: Make Scene IO more robust regarding invalid data (authored by kislinsk).
Make Scene IO more robust regarding invalid data
kislinsk updated the task description for T29334: Error on saving an MITK scene file with an empty surface, results in crash when loading the scene file again.
kislinsk added a revision to T29334: Error on saving an MITK scene file with an empty surface, results in crash when loading the scene file again: Unknown Object (Differential Revision).
kislinsk added a comment to T29334: Error on saving an MITK scene file with an empty surface, results in crash when loading the scene file again.
Pushed new branch to rMITK MITK: bugfix/T29334-MakeSceneSavingAndLoadingMoreRobust.
kislinsk triaged T29334: Error on saving an MITK scene file with an empty surface, results in crash when loading the scene file again as Unbreak Now! priority.
kislinsk triaged T29332: Welcome and help pages are not shown on Ubuntu 22.04 as Unbreak Now! priority.
Oct 6 2022
Oct 6 2022
Deleted branch from rMITK MITK: release/T29327-2022-Week-40.
Merge branch 'master' into develop
2022 Week 40 (Very Early October)
Pushed new branch to rMITK MITK: release/T29327-2022-Week-40.
Optimization of the mxnmultiwidget
Optimization of the mxnmultiwidget
kislinsk committed rMITKa01053ad3faa: Render window specific geometry comparison (authored by kislinsk).
Render window specific geometry comparison
kislinsk committed rMITK59c72d935751: Merge branch 'develop' into arcpatch-D722 (authored by kislinsk).
Merge branch 'develop' into arcpatch-D722
kislinsk committed rMITK04d3355d13be: Render window specific geometry comparison (authored by kalali).
Render window specific geometry comparison
Oct 5 2022
Oct 5 2022
Squashed into develop branch with co-authorship of @j762e, @kalali, and @floca: rMITK3dd8c7b5be73: Add GrowCut segmentation tool
Add GrowCut segmentation tool
Add GrowCut segmentatio tool
Deleted branch from rMITK MITK: feature/T28851-AddITKGrowCutTool.
kislinsk closed T28851: [SEG] Add ITK GrowCut as segmentation tool, a subtask of T28479: [Segmentation] Rethink / reevaluate our existing segmentation tools / algorithms, as Resolved.
kislinsk closed T28851: [SEG] Add ITK GrowCut as segmentation tool, a subtask of T29191: [SEG] New segmentation tool candidates, as Resolved.
kislinsk committed rMITK6c3702914aea: T28851-AddITKGrowCutTool (release prep) (authored by kislinsk).
T28851-AddITKGrowCutTool (release prep)
Oct 4 2022
Oct 4 2022
Deleted branch from rMITK MITK: bugfix/T29318-DeleteObsoleteResources.
Delete obsolete resources
kislinsk committed rMITKf1cbd59fd1e3: Merge branch 'bugfix/T29318-DeleteObsoleteResources' into develop (authored by kislinsk).
Merge branch 'bugfix/T29318-DeleteObsoleteResources' into develop
Pushed new branch to rMITK MITK: bugfix/T29318-DeleteObsoleteResources.
Deleted branch from rMITK MITK: bugfix/T29318-SegmentationToolIconsAndCursors.
kislinsk committed rMITKa75def7c9049: Improve templates for segmentation tool icons and cursors (authored by kislinsk).
Improve templates for segmentation tool icons and cursors
kislinsk committed rMITK752c7855db19: Use SVG icons and cursors for segmentation tools (authored by kislinsk).
Use SVG icons and cursors for segmentation tools
kislinsk committed rMITKe7d267f68790: Merge remote-tracking branch 'origin/develop' into bugfix/T29318… (authored by kislinsk).
Merge remote-tracking branch 'origin/develop' into bugfix/T29318…
kislinsk committed rMITK4846fc735537: Improve icon and cursor for Close segmentation tool (authored by kislinsk).
Improve icon and cursor for Close segmentation tool
Set new resource file names
kislinsk committed rMITK1f6ec651fa54: Merge branch 'bugfix/T29318-SegmentationToolIconsAndCursors' into develop (authored by kislinsk).
Merge branch 'bugfix/T29318-SegmentationToolIconsAndCursors' into develop
Pushed new branch to rMITK MITK: bugfix/T29318-SegmentationToolIconsAndCursors.
Sep 28 2022
Sep 28 2022
Here's the first batch of clean-up action. Needs to be continued!
In T24398#241998, @floca wrote:Our side or also the CTK part.
Hm, lets put it as known issue and discuss its priority when we plan the spring release.
Sep 27 2022
Sep 27 2022
I looked into the dicombrowser plugin and found out that the directory on Windows is something like %APPDATA%/../Local/Temp/TmpDicomFolder.************. However I didn't see pop up any files after retrieve.
Sep 23 2022
Sep 23 2022
kislinsk moved T24398: Dicom plugin: Retrieve does not work from Backlog to MITK Meeting on the Request for Discussion board.
I just tried to retrieve data from dicomserver.co.uk and I am able to query and kind of retrieve data. A repeated retrieve even tells me that existing files are overriden. At least that is what the console output tells me. But where are the retrieved images supposed to be stored? And shouldn't the retrieved images appear somewhere in the DICOM editor?
Sep 20 2022
Sep 20 2022