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Sep 2 2020

kislinsk committed rMITKaf09e331a755: Merge branch 'bugfix/T25882-RewriteDashboardScript' into develop (authored by kislinsk).
Merge branch 'bugfix/T25882-RewriteDashboardScript' into develop
Sep 2 2020, 9:31 AM
kalali claimed T27674: [Selection widgets] Enabling auto selection emits a signal that might not yet be connected.

Thank you, I wanted to post the discussion result here as well. I will fix this.

Sep 2 2020, 9:01 AM · Cleared, MITK
kislinsk added a comment to T27697: Documentation feedback received from testers .

The "url" downloads do not work for me. Slack is telling me that "there is a glitch".

Sep 2 2020, 8:56 AM · Auto-closed, MITK
thomass added a comment to T27697: Documentation feedback received from testers .

I would suggest that at least the plugin feedback in the GoogleDocs and the toplevel-> main page /MITKUserManual should be corrected before the Release. The rest should be corrected soon after.

Sep 2 2020, 8:36 AM · Auto-closed, MITK
thomass updated subscribers of T27697: Documentation feedback received from testers .
Sep 2 2020, 8:34 AM · Auto-closed, MITK
thomass updated the task description for T27697: Documentation feedback received from testers .
Sep 2 2020, 8:33 AM · Auto-closed, MITK
thomass triaged T27697: Documentation feedback received from testers as Normal priority.
Sep 2 2020, 8:33 AM · Auto-closed, MITK
thomass added a comment to T26934: Multiple logos in screenshot when using screenshot maker plugin.

@kislinsk: should we further investigate this or have a known issue section in the documentation?

Sep 2 2020, 8:12 AM · MITK (v2024.06)
thomass triaged T27696: Dicom loading does not work for some 4D data with the latest installer as Normal priority.
Sep 2 2020, 7:47 AM · DICOM, Missing Info, MITK

Sep 1 2020

floca added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

The log information in the console which Jonas reported doesn't turn up. So the console doesn't show any new information after the reader is selected.
I will ask about the HDD / IO.

Sep 1 2020, 6:19 PM · Missing Info, DICOM, MITK
thomass added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

The log information in the console which Jonas reported doesn't turn up. So the console doesn't show any new information after the reader is selected.
I will ask about the HDD / IO.

Sep 1 2020, 6:12 PM · Missing Info, DICOM, MITK
floca added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

she doesn't even get to the logging point. It doesn't show anything, it just stops (She closed the workbench after 10 Minutes).

What do you mean with logging point?

Sep 1 2020, 6:01 PM · Missing Info, DICOM, MITK
thomass added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

I am not sure if that is related but today one of my cooperation partners reported that she couldn't open an 4D image in MITK (Latest develop installer).
On my laptop it just works fine. On her laptop, however, she doesn't even get to the logging point. It doesn't show anything, it just stops (She closed the workbench after 10 Minutes).
I asked her whether it was an ancient laptop, but no ;)

Sep 1 2020, 5:56 PM · Missing Info, DICOM, MITK
floca edited projects for T27674: [Selection widgets] Enabling auto selection emits a signal that might not yet be connected, added: Cleared, Restricted Project; removed Request for Discussion.

Discussion result:
As you cannot hook into the Qt connect mechanism, I see no "simple" chance to automatically manage that under the hood. The most pragmatic solution is to simply add a remark to the class (QmitkSingleNodeSelectionWidget) and method (SetAutoSelectNewNodes()) that on should activate this feature *after* connecting the events to ensure already the first autoselect has an effect.

Sep 1 2020, 5:53 PM · Cleared, MITK
floca moved T27524: Should RenderingManager be used without singleton? from Backlog to MITK Meeting on the Request for Discussion board.
Sep 1 2020, 5:48 PM · Request for Discussion, MITK
floca added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

It is pretty weird since it even:

suggests 1 3D blocks

Sep 1 2020, 5:31 PM · Missing Info, DICOM, MITK
floca changed the status of T25125: QmitkNodeSelectionButton text color does not work with dark theme from Wontfix to Resolved.

Is fixed. but please don't ask when it happened ;).

Sep 1 2020, 5:22 PM · MITK
kislinsk closed T19011: DICOM Browser: Scanning empty directory causes Import dialog to stay open forever as Wontfix.

Hi there! 🙂

Sep 1 2020, 4:46 PM · Auto-closed, MITK, Bugzilla
kislinsk closed T23148: OnSelectionChanged event is sent twice sometimes as Wontfix.

Hi there! 🙂

Sep 1 2020, 4:46 PM · Auto-closed, MITK
kislinsk closed T24210: No error message displayed when incorrectly using Polhemus tracker as Wontfix.

Hi there! 🙂

Sep 1 2020, 4:46 PM · Auto-closed, MITK, IGT
kislinsk closed T25027: Unhandled exception thrown from ctkPluginContextPrivate::isPluginContextValid() when closing the workbench as Wontfix.

Hi there! 🙂

Sep 1 2020, 4:46 PM · Auto-closed, MITK (2016-11)
kislinsk closed T25125: QmitkNodeSelectionButton text color does not work with dark theme as Wontfix.

Hi there! 🙂

Sep 1 2020, 4:46 PM · MITK
kislinsk closed T25296: diffusion kurtosis maps as Wontfix.

Hi there! 🙂

Sep 1 2020, 4:46 PM · Auto-closed, MITK
kislinsk closed T27695: 2020 Week 36 (Very Early September) as Resolved.
Sep 1 2020, 4:42 PM · MITK
kislinsk added a comment to T25882: Rewrite dashboard script for CDash 2.6.

Deleted branch hotfix/T25882-CDash-v2.6.

Sep 1 2020, 4:41 PM · CI, MITK (v2021.02), Restricted Project
kislinsk added a comment to T27695: 2020 Week 36 (Very Early September).

Deleted branch release/T27695-2020-Week-36.

Sep 1 2020, 4:40 PM · MITK
kislinsk committed rMITK4abd657cba75: Merge branch 'release/T27695-2020-Week-36' into develop (authored by kislinsk).
Merge branch 'release/T27695-2020-Week-36' into develop
Sep 1 2020, 4:39 PM
kislinsk committed rMITK96eff29e7367: 2020 Week 36 (Very Early September) (authored by kislinsk).
2020 Week 36 (Very Early September)
Sep 1 2020, 4:37 PM
kislinsk edited the content of Changelog.
Sep 1 2020, 4:35 PM · MITK
kislinsk edited the content of 2020 Week 36 (Very Early September).
Sep 1 2020, 4:34 PM
thomass added a revision to T27691: [MITKDoc] Documentation links reference "The Phenotyping" subpages: Unknown Object (Differential Revision).
Sep 1 2020, 4:29 PM · MITK (v2021.02)
thomass claimed T27691: [MITKDoc] Documentation links reference "The Phenotyping" subpages.
Sep 1 2020, 4:21 PM · MITK (v2021.02)
thomass committed rMITK288df1f125b1: T27106 Rework Volumevisualization Documentation (authored by thomass).
T27106 Rework Volumevisualization Documentation
Sep 1 2020, 4:06 PM
thomass closed T27106: [MITKDoc] Revise Volume Visualization Plugin Documentation as Resolved by committing rMITK288df1f125b1: T27106 Rework Volumevisualization Documentation.
Sep 1 2020, 4:05 PM · Cleared, MITK (v2021.02)
kislinsk added a comment to T25882: Rewrite dashboard script for CDash 2.6.

This is part of this issue (actually the main reason). It is already working in my local version but I have to make a few adaptions to get a stable minimum working version for production.

Sep 1 2020, 4:02 PM · CI, MITK (v2021.02), Restricted Project
kislinsk updated the task description for T27695: 2020 Week 36 (Very Early September).
Sep 1 2020, 3:50 PM · MITK
kislinsk added a comment to T27695: 2020 Week 36 (Very Early September).

Pushed new branch release/T27695-2020-Week-36.

Sep 1 2020, 3:34 PM · MITK
kislinsk triaged T27695: 2020 Week 36 (Very Early September) as Normal priority.
Sep 1 2020, 3:31 PM · MITK
kislinsk created an object: 2020 Week 36 (Very Early September).
Sep 1 2020, 3:30 PM
eisenman triaged T27694: Fix failing unit tests as High priority.
Sep 1 2020, 3:09 PM · challengeR (v1.0)
floca claimed T27113: [MITKDoc] Revise Matchpoint Registration Manipulator Plugin Documentation.
Sep 1 2020, 1:24 PM · Cleared, MITK (v2021.02)
floca claimed T27111: [MITKDoc] Revise Matchpoint Registration Visualizer Plugin Documentation.
Sep 1 2020, 1:24 PM · Cleared, MITK (v2021.02)
floca added a comment to T25882: Rewrite dashboard script for CDash 2.6.

@kislinsk Currently the Dashboard, does not show the error or failed tests if you click on the Number in the table. Is this part of this issues or another one?

Sep 1 2020, 1:20 PM · CI, MITK (v2021.02), Restricted Project
floca closed T27605: Stitching functionality as Resolved.

Fixed with D382.

Sep 1 2020, 1:00 PM · Noteworthy, MITK
floca committed rMITK69ec2a4a463c: Updated mapper docu (authored by floca).
Updated mapper docu
Sep 1 2020, 12:59 PM
floca committed rMITK6764af126313: Fixed review remarks (authored by floca).
Fixed review remarks
Sep 1 2020, 12:59 PM
floca committed rMITKc77264300f24: Updated mapper docu (authored by floca).
Updated mapper docu
Sep 1 2020, 12:59 PM
floca committed rMITK0164663aebda: Fixed review remarks. (authored by floca).
Fixed review remarks.
Sep 1 2020, 12:59 PM
floca closed T27114: [MITKDoc] Revise Matchpoint Mapper Plugin Documentation as Resolved by committing rMITKc77264300f24: Updated mapper docu.
Sep 1 2020, 12:59 PM · Cleared, MITK (v2021.02)
floca committed rMITK236f0821b518: Fixed docu typos (authored by floca).
Fixed docu typos
Sep 1 2020, 12:57 PM
floca committed rMITKe48ac63bd6fd: Implementation of stitching functionality (authored by floca).
Implementation of stitching functionality
Sep 1 2020, 12:57 PM
floca committed rMITK15023c734c68: Fixed gcc errors (authored by floca).
Fixed gcc errors
Sep 1 2020, 12:57 PM
thomass committed rMITK572613b0ccca: T27672 Enable Measurement selection with autoselection (authored by thomass).
T27672 Enable Measurement selection with autoselection
Sep 1 2020, 12:50 PM
thomass closed T27672: [Measurement] Planar figures are disabled when the image is already loaded as Resolved by committing rMITK572613b0ccca: T27672 Enable Measurement selection with autoselection.
Sep 1 2020, 12:50 PM · MITK (v2021.02)
floca triaged T27693: Packaging Python does not work/is not implemented as High priority.
Sep 1 2020, 12:33 PM · MITK
kislinsk added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

I agree to @floca and I am quite sure this is related to installer vs. starting from build directory.

Sep 1 2020, 11:19 AM · Missing Info, DICOM, MITK
schererj added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

It is pretty weird since it even:

Sep 1 2020, 10:57 AM · Missing Info, DICOM, MITK
floca added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

Remark: It could be releated to T26451 and caused by the same underlying problem.

Sep 1 2020, 10:29 AM · Missing Info, DICOM, MITK
schererj added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

Yes I'm using the normal desktop workbench - no Docker involved :)

Sep 1 2020, 10:15 AM · Missing Info, DICOM, MITK

Aug 31 2020

wiesenfa moved T27327: warning in docx report from In Progress to Done on the challengeR (v1.0) board.
Aug 31 2020, 6:33 PM · challengeR (v1.0)
wiesenfa committed rCHALLENGER4462382e4272: fixes (authored by wiesenfa).
fixes
Aug 31 2020, 6:25 PM
wiesenfa committed rCHALLENGERb3f747f61e4b: fix figure.format conflict with networks (authored by wiesenfa).
fix figure.format conflict with networks
Aug 31 2020, 6:25 PM
wiesenfa committed rCHALLENGER29fcaabf46e0: fix (authored by wiesenfa).
fix
Aug 31 2020, 6:25 PM
wiesenfa committed rCHALLENGERa5465970a236: add dendrogram (authored by wiesenfa).
add dendrogram
Aug 31 2020, 6:25 PM
wiesenfa committed rCHALLENGERb286e03e1e80: new func dendrogram() (authored by wiesenfa).
new func dendrogram()
Aug 31 2020, 6:25 PM
wiesenfa committed rCHALLENGER834c265c2168: fixes (authored by wiesenfa).
fixes
Aug 31 2020, 6:06 PM
wiesenfa moved T27327: warning in docx report from Backlog to In Progress on the challengeR (v1.0) board.
Aug 31 2020, 5:39 PM · challengeR (v1.0)
wiesenfa added a comment to T27327: warning in docx report.

should be solved with T27294

Aug 31 2020, 5:39 PM · challengeR (v1.0)
wiesenfa moved T27294: add multiple figure output formats in report with option clean=TRUE from Backlog to In Progress on the challengeR (v1.0) board.
Aug 31 2020, 5:37 PM · challengeR (v1.0)
wiesenfa added a comment to T27294: add multiple figure output formats in report with option clean=TRUE.

report() gains new argument fig.format to specify figure output formats in case of clean=FALSE.
can be vector, e.g. fig.format=c('jpeg','png', 'pdf'), then 3 files are stored for each figure

Aug 31 2020, 5:37 PM · challengeR (v1.0)
wiesenfa committed rCHALLENGER7303c65b21cc: allow specificaton of figure format in report (authored by wiesenfa).
allow specificaton of figure format in report
Aug 31 2020, 5:32 PM
floca added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.
In T27669#208866, @gaoh wrote:

As I understand @schererj he is not using a MITK container but the binaries from the MITK-nightly build.

I have checked it with the todays nightly build of MITK from CI. So this does work.
@schererj Could you give some details on what binaries you have used?

Aug 31 2020, 5:00 PM · Missing Info, DICOM, MITK
wiesenfa updated the task description for T27658: LaTeX Warning: There were undefined references.
Aug 31 2020, 4:58 PM · challengeR (v1.0)
wiesenfa committed rCHALLENGER21f6bb076a05: ranking scheme description (authored by wiesenfa).
ranking scheme description
Aug 31 2020, 4:49 PM
wiesenfa moved T27337: Report contains wrong ranking method when rank-then-aggregate is used from Backlog to In Progress on the challengeR (v1.0) board.
Aug 31 2020, 4:42 PM · challengeR (v1.0)
wiesenfa added a comment to T27337: Report contains wrong ranking method when rank-then-aggregate is used.

actually it was

Aug 31 2020, 4:42 PM · challengeR (v1.0)
wiesenfa added a comment to T27452: Provide plot function for dendrogram.

@eisenman worked at least for one test data set. I guess this can be closed

Aug 31 2020, 4:29 PM · challengeR (v1.0)
gaoh added a comment to T27669: Dicom import issue with MITK binaries (package) and Ubuntu.

I have checked it with the current develop head under linux (Ubuntu 18) as well. I cannot reproduce the descibed error. Everything is loaded into one volume.

@gaoh May it is an outdated MITK container?

Aug 31 2020, 4:28 PM · Missing Info, DICOM, MITK
wiesenfa added a comment to T27452: Provide plot function for dendrogram.

new function dendrogram(), also handles more informative titles ( T27411 ).
also updated in report

Aug 31 2020, 4:28 PM · challengeR (v1.0)
wiesenfa moved T27411: Improve labels in cluster dendrogram from In Progress to Done on the challengeR (v1.0) board.
Aug 31 2020, 4:24 PM · challengeR (v1.0)
wiesenfa moved T27411: Improve labels in cluster dendrogram from Backlog to In Progress on the challengeR (v1.0) board.
Aug 31 2020, 4:24 PM · challengeR (v1.0)
wiesenfa moved T27452: Provide plot function for dendrogram from Backlog to In Progress on the challengeR (v1.0) board.
Aug 31 2020, 4:24 PM · challengeR (v1.0)
floca added a project to T27669: Dicom import issue with MITK binaries (package) and Ubuntu: Missing Info.

I have checked it with the current develop head under linux (Ubuntu 18) as well. I cannot reproduce the descibed error. Everything is loaded into one volume.

Aug 31 2020, 4:21 PM · Missing Info, DICOM, MITK
kalali moved T27691: [MITKDoc] Documentation links reference "The Phenotyping" subpages from Backlog to Documentation on the MITK (v2021.02) board.
Aug 31 2020, 4:08 PM · MITK (v2021.02)
kalali edited projects for T27691: [MITKDoc] Documentation links reference "The Phenotyping" subpages, added: MITK (v2021.02); removed MITK.
Aug 31 2020, 4:08 PM · MITK (v2021.02)
wiesenfa added a comment to T27657: When missing algorithm performances are added as NAs, task is also NA.

@eisenman could affect tests. please close when finished

Aug 31 2020, 3:49 PM · challengeR (v1.0)
wiesenfa added a comment to T27253: Notify user when multi-task data set is interpreted as single-task data set.

@eisenman could affect tests. please close when finished

Aug 31 2020, 3:48 PM · challengeR (v1.0)
wiesenfa added a comment to T27475: Legend of blob plot has missing legend title and algorithms.

@eisenman please close when finished

Aug 31 2020, 3:48 PM · challengeR (v1.0)
wiesenfa committed rCHALLENGER43b6f47337a1: missings warning message respects single tasks (authored by wiesenfa).
missings warning message respects single tasks
Aug 31 2020, 3:45 PM
kalali triaged T27691: [MITKDoc] Documentation links reference "The Phenotyping" subpages as Normal priority.
Aug 31 2020, 3:39 PM · MITK (v2021.02)
wiesenfa moved T27657: When missing algorithm performances are added as NAs, task is also NA from Backlog to In Progress on the challengeR (v1.0) board.
Aug 31 2020, 3:37 PM · challengeR (v1.0)
wiesenfa claimed T27657: When missing algorithm performances are added as NAs, task is also NA.
Aug 31 2020, 3:37 PM · challengeR (v1.0)
wiesenfa moved T27253: Notify user when multi-task data set is interpreted as single-task data set from Backlog to In Progress on the challengeR (v1.0) board.
Aug 31 2020, 3:37 PM · challengeR (v1.0)
wiesenfa added a comment to T27253: Notify user when multi-task data set is interpreted as single-task data set.

if at least one quarter of cases have a duplicate, the error message is extended by "Or are you considering a multi-task challenge and forgot to specify argument 'by'? "
Otherwise the error message is now further improved, e.g. if it is a single task, the error message doesn't mention "in task dummyTask any more".
Example error message:

Aug 31 2020, 3:36 PM · challengeR (v1.0)
wiesenfa committed rCHALLENGER80d24ef83d16: informative message in case of duplicates (authored by wiesenfa).
informative message in case of duplicates
Aug 31 2020, 3:32 PM
kalali added a comment to T27094: [MITKDoc] Revise Segmentation Utilities Plugin Documentation.
  1. That is rather a bug, because in Phenotyping there is a reference that shouldn't be there, maybe we can remove that.
Aug 31 2020, 3:30 PM · Cleared, MITK (v2021.02)
wiesenfa claimed T27449: Consistent handling of plots created for multi-task data sets.
Aug 31 2020, 2:51 PM · challengeR (v1.0)
wiesenfa claimed T27338: Report contains misleading information on missing values.
Aug 31 2020, 2:51 PM · challengeR (v1.0)
wiesenfa claimed T27452: Provide plot function for dendrogram.
Aug 31 2020, 2:50 PM · challengeR (v1.0)
wiesenfa claimed T27411: Improve labels in cluster dendrogram.
Aug 31 2020, 2:50 PM · challengeR (v1.0)