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Jan 28 2023

floca added a comment to T29444: Ability to add "tags" to annotated regions.

@ahmadqasim thank you for the additional information. I think we should schedule a VCon or meeting to clarify some things (e.g. some of the information seem to be contradicting) and to ensure that everything is properly understood and we decide for the best design option. Could you arrange a poll? Thanks.

Jan 28 2023, 4:40 PM · MITK (v2024.06)

Jan 27 2023

s434n added a revision to T29446: Create a citation file for MITK: Restricted Differential Revision.
Jan 27 2023, 5:25 PM · MITK (v2023.04)

Jan 25 2023

a178n claimed T29437: [SEG] Add TotalSegmentator.
Jan 25 2023, 1:55 PM · MITK
Lei created T29447: ML-based tractography module of MITK diffusion.
Jan 25 2023, 1:36 PM
kislinsk moved T29444: Ability to add "tags" to annotated regions from Backlog to MITK Meeting on the Request for Discussion board.
Jan 25 2023, 12:07 PM · MITK (v2024.06)
kislinsk moved T29445: Make Segmentation Tasks Lists fully available in the MITK Workbench from Backlog to MITK Meeting on the Request for Discussion board.
Jan 25 2023, 12:07 PM · MITK (v2023.04)
s434n triaged T29446: Create a citation file for MITK as Normal priority.
Jan 25 2023, 11:52 AM · MITK (v2023.04)
kislinsk moved T29437: [SEG] Add TotalSegmentator from MITK Meeting to Backlog on the Request for Discussion board.
Jan 25 2023, 11:48 AM · MITK
floca removed a project from T28140: [MultiLabel Segmentation] Default parameter (unsigned int layer = 0) is unnecessary and causes problems: Request for Discussion.
Jan 25 2023, 9:27 AM · MITK (v2024.06)
floca added a comment to T29431: [worklist] mitk-flow: save changed dicom segmentation not possible.

@gaoh / @kislinsk would that integration/workflow something for the MIC meeting pitch?

Jan 25 2023, 9:18 AM · MITK
floca added a comment to T29431: [worklist] mitk-flow: save changed dicom segmentation not possible.

🎉

Jan 25 2023, 9:15 AM · MITK
gaoh added a comment to T29431: [worklist] mitk-flow: save changed dicom segmentation not possible.

thanks again, for solving this issue! So in the current kaapana develop the tasklist feature is now integrated!

Jan 25 2023, 9:13 AM · MITK

Jan 24 2023

floca reopened T23973: Improve MITK HiDPI support as "Open".
Jan 24 2023, 11:17 AM · MITK (v2023.04), Request for Discussion
floca raised the priority of T23973: Improve MITK HiDPI support from Wishlist to Needs Triage.

We should discuss if/how we revisit that task. With current hidpi monitors (e.g. our new notebooks), it realy starts to become a usibility issue in my regard.

Jan 24 2023, 11:17 AM · MITK (v2023.04), Request for Discussion
ahmadqasim added a comment to T29444: Ability to add "tags" to annotated regions.

Sorry! I changed them now.

Jan 24 2023, 9:53 AM · MITK (v2024.06)
ahmadqasim attached a referenced file: F2621142: unsure.png.
Jan 24 2023, 9:53 AM · MITK (v2024.06)
ahmadqasim attached a referenced file: F2621144: tagged.png.
Jan 24 2023, 9:53 AM · MITK (v2024.06)
kislinsk added a comment to T29444: Ability to add "tags" to annotated regions.

@ahmadqasim We cannot see the images as their View Policies are too strict (it is an issue with Phabricator). You can change the View Policy afterwards by clicking on the file and you find according settings in the menu.

Jan 24 2023, 9:52 AM · MITK (v2024.06)

Jan 23 2023

ahmadqasim added a comment to T29444: Ability to add "tags" to annotated regions.

Hi Ralf,

Jan 23 2023, 4:36 PM · MITK (v2024.06)
floca added a comment to T29444: Ability to add "tags" to annotated regions.

@ahmadqasim : 3 questions.

  1. are you doing semantic seg or instance segmentation. Your description sound in betweenish. So do you want to tag a special region or everything that is labeld with a certain label?
  2. was there a special reason why you want to do it via the picking tool? Why not directly editing in the list of labels?
  3. What is the time frame when it should be available?
Jan 23 2023, 3:13 PM · MITK (v2024.06)
floca added a project to T29445: Make Segmentation Tasks Lists fully available in the MITK Workbench: Request for Discussion.

We may be have to sort out some technical details. Currently the view has a hard code name/UI that is defined by MITK Flow policy. MITK Flow expects always to have *one* view with view id="org.mitk.views.flow.control". That id is not very specific on purpose as you could use the MITK Flow with just another set views (e.g. a hypothatical org.mitk.gui.qt.flow.registration plugin) and then have the same work style but for doing registration. By using an id convention for the view that controls the saving/clearence of the data and one well defined perspective (ID = org.mitk.qt.flowapplication.defaultperspective) they are easy interchangable. If we start to reuse them in the normal application it might be a problem as the IDs are not very specific.

Jan 23 2023, 3:10 PM · MITK (v2023.04)
kislinsk triaged T29445: Make Segmentation Tasks Lists fully available in the MITK Workbench as Normal priority.
Jan 23 2023, 1:31 PM · MITK (v2023.04)
kislinsk placed T29225: Rule Checker for FlowBench up for grabs.
Jan 23 2023, 1:27 PM · MITK
kislinsk added a comment to T29412: List of MITK publications on web page is not up to date.

Status: Added quite a few papers up until 2020 thanks to a currated list of papers from @floca. For the past two years we now need to look out for papers first.

Jan 23 2023, 1:19 PM · MITK

Jan 20 2023

floca added a comment to T29206: [SEG] Implement a Qt model for LabelSets for MVC patterns.

Pushed new branch to rMITK MITK: feature/T29206-MVC_for_labelsets_v2.

Jan 20 2023, 4:27 PM · MITK (v2023.04), Checklist

Jan 19 2023

kislinsk updated the task description for T29444: Ability to add "tags" to annotated regions.
Jan 19 2023, 10:17 PM · MITK (v2024.06)
kislinsk added a project to T29444: Ability to add "tags" to annotated regions: Request for Discussion.
Jan 19 2023, 10:17 PM · MITK (v2024.06)
ahmadqasim attached a referenced file: F2620746: 1.png.
Jan 19 2023, 6:08 PM · MITK (v2024.06)
ahmadqasim attached a referenced file: F2620748: 2.png.
Jan 19 2023, 6:08 PM · MITK (v2024.06)
ahmadqasim attached a referenced file: F2620750: 3.png.
Jan 19 2023, 6:08 PM · MITK (v2024.06)
ahmadqasim attached a referenced file: F2620752: 4.png.
Jan 19 2023, 6:08 PM · MITK (v2024.06)
ahmadqasim triaged T29444: Ability to add "tags" to annotated regions as Normal priority.
Jan 19 2023, 6:01 PM · MITK (v2024.06)
kislinsk added a comment to T29431: [worklist] mitk-flow: save changed dicom segmentation not possible.

@gaoh I triggered the build of a new Flowbench installer in our CI. Will be ready later today and automatically uploaded. Commit hash: 122321bb.

Jan 19 2023, 3:36 PM · MITK
kislinsk closed T29431: [worklist] mitk-flow: save changed dicom segmentation not possible as Resolved by committing rMITK122321bb10af: Add DICOM SEG workaround as specified in T29431.
Jan 19 2023, 3:32 PM · MITK
kislinsk committed rMITK122321bb10af: Add DICOM SEG workaround as specified in T29431 (authored by kislinsk).
Add DICOM SEG workaround as specified in T29431
Jan 19 2023, 3:32 PM
kislinsk committed rMITK09f2d8ae9272: Add DICOM SEG workaround as specified in T29432 (authored by kislinsk).
Add DICOM SEG workaround as specified in T29432
Jan 19 2023, 3:32 PM
floca added a comment to T29431: [worklist] mitk-flow: save changed dicom segmentation not possible.

@gaoh could you verify if the fix work?

Jan 19 2023, 3:04 PM · MITK
kislinsk added a revision to T29431: [worklist] mitk-flow: save changed dicom segmentation not possible: Unknown Object (Differential Revision).
Jan 19 2023, 10:28 AM · MITK
kislinsk committed rMITK9105e0ca9c7d: Deactivate preloading (authored by kislinsk).
Deactivate preloading
Jan 19 2023, 9:32 AM
kislinsk committed rMITK9f91bb7ad618: Merge branch 'feature/T29432-PreloadFirstTask2' into develop (authored by kislinsk).
Merge branch 'feature/T29432-PreloadFirstTask2' into develop
Jan 19 2023, 9:32 AM
kislinsk added a comment to T29432: [worklist] mitk-flow preload first task.

Pushed new branch to rMITK MITK: feature/T29432-PreloadFirstTask2.

Jan 19 2023, 9:32 AM · MITK
kislinsk raised the priority of T29432: [worklist] mitk-flow preload first task from Wishlist to High.

Original issue resolved, raising priority and leaving open to discuss consequences in the next MITK meeting.

Jan 19 2023, 9:13 AM · MITK
kislinsk added a comment to T29432: [worklist] mitk-flow preload first task.

Deleted branch from rMITK MITK: feature/T29432-PreloadFirstTask.

Jan 19 2023, 9:11 AM · MITK
kislinsk committed rMITK7aa58d50cea4: Automatically load first unfinished task of task list (authored by kislinsk).
Automatically load first unfinished task of task list
Jan 19 2023, 9:11 AM
kislinsk committed rMITKcfe4eee32d37: Prevent unnecessary data modification (authored by kislinsk).
Prevent unnecessary data modification
Jan 19 2023, 9:11 AM
kislinsk committed rMITKfa49a75ea36d: Migrate to microservice-based preferences (authored by kislinsk).
Migrate to microservice-based preferences
Jan 19 2023, 9:11 AM
kislinsk committed rMITKd1fa87498876: Merge branch 'feature/T29432-PreloadFirstTask' into develop (authored by kislinsk).
Merge branch 'feature/T29432-PreloadFirstTask' into develop
Jan 19 2023, 9:11 AM
kislinsk added a comment to T29432: [worklist] mitk-flow preload first task.

Pushed new branch to rMITK MITK: feature/T29432-PreloadFirstTask.

Jan 19 2023, 9:11 AM · MITK
kislinsk added a comment to T29432: [worklist] mitk-flow preload first task.

While the original issue is rather easy to resolve by exchanging the class to data->Modified() with a RequestRenderWindowAll() (which is the actual intent anyway according to the comments), more hurdles start to appear that are not as easy to resolve.

Jan 19 2023, 9:05 AM · MITK
kislinsk removed a project from T29412: List of MITK publications on web page is not up to date: Request for Discussion.
Jan 19 2023, 7:20 AM · MITK
kislinsk added a comment to T29412: List of MITK publications on web page is not up to date.

Status: Currently I add 10 MITK-related papers per day to our publications page. Ongoing...

Jan 19 2023, 7:19 AM · MITK

Jan 18 2023

kalali added a comment to T29297: [mxn multi widget] Optimize data accessibility inside render windows.

@s434n I added my draft with a custom multi node selection widget and several action buttons. There are some things missing and going wrong but this should give you a better overview of the current status.
Things that are not working correctly / are missing:

  • thumbnail / pixmap for the data node
  • currently the widget is not reacting on node changes (name change or later, thumbnail change)
  • moving an item in the list does not change the layer order
  • currently the length of the list widget / item is defined by the string and thus the push buttons are not aligned
    • also the whole widget is not extended if a name is too long
Jan 18 2023, 6:29 PM · MITK (v2023.04)
kalali added a revision to T29297: [mxn multi widget] Optimize data accessibility inside render windows: Unknown Object (Differential Revision).
Jan 18 2023, 6:24 PM · MITK (v2023.04)
kalali moved T24738: [Selection concept] Thumbnail preview of images for datastorage inspectors from Backlog to mxn MultiWidget on the MITK (v2023.04) board.
Jan 18 2023, 4:54 PM · MITK (v2024.06), Restricted Project
kalali edited projects for T24738: [Selection concept] Thumbnail preview of images for datastorage inspectors, added: MITK (v2023.04); removed MITK, Next Milestone.
Jan 18 2023, 4:54 PM · MITK (v2024.06), Restricted Project

Jan 17 2023

kislinsk removed a member for MITK: petersej.
Jan 17 2023, 7:26 AM
kislinsk removed a member for MITK: groehl.
Jan 17 2023, 7:26 AM
kislinsk removed a member for MITK: rosst.
Jan 17 2023, 7:26 AM
kislinsk removed a member for MITK: thomass.
Jan 17 2023, 7:26 AM
kislinsk removed a member for MITK: kleina.
Jan 17 2023, 7:25 AM
kislinsk removed a member for MITK: onogur.
Jan 17 2023, 7:25 AM
kislinsk removed a member for MITK: mindrocf.
Jan 17 2023, 7:25 AM
kislinsk removed a member for MITK: e249r.
Jan 17 2023, 7:25 AM
kislinsk removed a member for MITK: s349i.
Jan 17 2023, 7:25 AM
kislinsk archived MITK (v2022.10).
Jan 17 2023, 7:25 AM
kislinsk removed a member for MIC: petersej.
Jan 17 2023, 7:25 AM
kislinsk removed a member for MIC: kleina.
Jan 17 2023, 7:25 AM
kislinsk removed a member for MIC: kamphenk.
Jan 17 2023, 7:24 AM
kislinsk removed a member for MIC: zhangs.
Jan 17 2023, 7:24 AM
kislinsk removed a member for MIC: k921n.
Jan 17 2023, 7:24 AM
kislinsk removed a member for MIC: f818k.
Jan 17 2023, 7:24 AM
kislinsk removed a member for MIC: m564f.
Jan 17 2023, 7:24 AM
kislinsk removed a member for MIC: s429r.
Jan 17 2023, 7:24 AM
kislinsk removed a member for MIC: thomass.
Jan 17 2023, 7:24 AM
kislinsk removed a member for MIC: d485r.
Jan 17 2023, 7:24 AM
kislinsk removed a member for MIC: rasheed.
Jan 17 2023, 7:24 AM
kislinsk removed a member for MIC: graf.
Jan 17 2023, 7:24 AM
kislinsk removed a member for MIC: c082x.
Jan 17 2023, 7:24 AM
kislinsk removed a member for MIC: e249r.
Jan 17 2023, 7:24 AM
kislinsk removed a member for MIC: m139l.
Jan 17 2023, 7:24 AM
kislinsk removed a member for MIC: o776l.
Jan 17 2023, 7:24 AM
kislinsk removed a member for MIC: forche.
Jan 17 2023, 7:24 AM
kislinsk removed a member for MIC: s349i.
Jan 17 2023, 7:23 AM
kislinsk removed a member for MIC: o280o.
Jan 17 2023, 7:23 AM

Jan 13 2023

kislinsk added a member for MITK-MBI: a564y.
Jan 13 2023, 4:13 PM
floca triaged T29442: [Perfusion] Support of OSIPI Caplex as Normal priority.
Jan 13 2023, 3:42 PM · Request for Discussion, MITK
kislinsk claimed T29431: [worklist] mitk-flow: save changed dicom segmentation not possible.

Thanks Ralf!

Jan 13 2023, 12:42 AM · MITK

Jan 12 2023

floca added a comment to T29431: [worklist] mitk-flow: save changed dicom segmentation not possible.

Describe problem has the same root then T26953. But I think for this task here we can have a work around, so that Hanno does not need to wait until the DICOM Seg thing is fixed.

Jan 12 2023, 7:09 PM · MITK

Jan 11 2023

neher committed rMITKDIFF170241e09dd8: Merge branch 'T29441-RemoveTractometry' (authored by neher).
Merge branch 'T29441-RemoveTractometry'
Jan 11 2023, 3:11 PM
neher committed rMITKDIFF4790cc2ec87c: Remove all tractometry components (authored by neher).
Remove all tractometry components
Jan 11 2023, 3:11 PM
neher triaged T29441: Remove tractometry as Wishlist priority.
Jan 11 2023, 3:08 PM · MITK Diffusion
neher committed rMITKDIFF1485fc2f4b12: radtract screenshots etc (authored by neher).
radtract screenshots etc
Jan 11 2023, 3:02 PM
neher committed rMITKDIFF311df5b8ccce: Merge branch 'T29430-FlipXtrk' (authored by neher).
Merge branch 'T29430-FlipXtrk'
Jan 11 2023, 2:59 PM
neher committed rMITKDIFF2f6bf1b5fc85: Making RAS default. Flip x on load is not default (authored by neher).
Making RAS default. Flip x on load is not default
Jan 11 2023, 2:58 PM
kislinsk closed T29292: Unsupported pixel types as Wontfix.

We see and feel you. Considering the circumstances that Ralf mentioned (it's basically an ITK issue/contribution) I would anyway go for a Won't Fix here on our MITK side for now, until ITK provides the functionalities for such data types. Okay? :)

Jan 11 2023, 1:01 PM · Request for Discussion, MITK
floca removed a project from T29204: [SEG] Rework properties of Label class + add instance information: Request for Discussion.

Discussed: Proposal is fine, we should do it this way.

Jan 11 2023, 12:39 PM · MITK (v2024.06), Breaking Change
kislinsk moved T29294: Extend &/or Test nnUnet(v2) on Windows from MITK Meeting to Backlog on the Request for Discussion board.
Jan 11 2023, 12:18 PM · MITK (v2023.12), Request for Discussion
kislinsk claimed T29412: List of MITK publications on web page is not up to date.
Jan 11 2023, 12:12 PM · MITK
kislinsk triaged T29437: [SEG] Add TotalSegmentator as High priority.

As it is a really nice user-friendly feature, we have a high interest in getting TotalSegmenter integrated soon into MITK.

Jan 11 2023, 11:49 AM · MITK
franza edited projects for T29435: MITK example for usage of the ICP algorithm, added: MITK (v2023.04), Pull Request; removed MITK.
Jan 11 2023, 10:41 AM · MITK (v2024.06), Pull Request