• s349i renamed T29355: Update 3D Segmentation Checklist to reflect current 3D Segmentation tools status from Update 3D Segmentation Checklist to reflect current status to Update 3D Segmentation Checklist to reflect current 3D Segmentation tools status.

Oct 12 2022, 10:54 AM · Cleared, Restricted Project, Checklist, MITK (v2022.10)

• s349i triaged T29355: Update 3D Segmentation Checklist to reflect current 3D Segmentation tools status as Normal priority.

Oct 12 2022, 10:54 AM · Cleared, Restricted Project, Checklist, MITK (v2022.10)

Oct 10 2022

• s349i updated the task description for T29352: Segmentation Options Checklist - "Create Smoothed Polygon" Seems Not to Work.

Oct 10 2022, 6:25 PM · MITK (v2024.06), Cleared, Checklist

• s349i renamed T29352: Segmentation Options Checklist - "Create Smoothed Polygon" Seems Not to Work from Segmentation Options Checklist - "Create Smoothed Polygon" Seems Not to Work. to Segmentation Options Checklist - "Create Smoothed Polygon" Seems Not to Work.

Oct 10 2022, 5:31 PM · MITK (v2024.06), Cleared, Checklist

• s349i triaged T29352: Segmentation Options Checklist - "Create Smoothed Polygon" Seems Not to Work as Normal priority.

Oct 10 2022, 5:30 PM · MITK (v2024.06), Cleared, Checklist

• s349i created T29351: Segmentation Options - "Create Smoothed Polygon.

Oct 10 2022, 5:19 PM · MITK

• s349i updated the task description for T29348: Improve Welcome page with basic navigation hints.

Oct 10 2022, 12:25 PM · Cleared, Checklist, MITK (v2022.10)

• s349i triaged T29348: Improve Welcome page with basic navigation hints as Normal priority.

Oct 10 2022, 12:22 PM · Cleared, Checklist, MITK (v2022.10)

• s349i triaged T29347: Measurement Checklist - Possible inconsistent recentering behavior when clicking on geometry node in Data Manager. as Normal priority.

Oct 10 2022, 11:58 AM · Request for Discussion, Checklist

• s349i updated the task description for T29345: Level Window Checklist - Default range of loaded image different for Ubuntu 22.04 and Windows 10..

Oct 10 2022, 11:35 AM · Missing Info, Checklist, MITK (v2022.10)

• s349i triaged T29346: Level Window Checklist - Level Window slider inconsistent upper/lower bound behavior on mouse clicks. as Normal priority.

Oct 10 2022, 11:35 AM · MITK (v2023.04), Cleared

• s349i triaged T29345: Level Window Checklist - Default range of loaded image different for Ubuntu 22.04 and Windows 10. as Normal priority.

Oct 10 2022, 11:30 AM · Missing Info, Checklist, MITK (v2022.10)

• s349i created T29344: Image Rendering - No difference between "Jet" and "Jet Transparent".

Oct 10 2022, 11:24 AM · Cleared, Checklist, MITK (v2022.10)

• s349i triaged T29343: Image Rendering Checklist - Unclear/Wrong instructions regarding pixel alignment after loading as Normal priority.

Oct 10 2022, 11:21 AM · Cleared, Checklist, MITK (v2022.10)

• s349i renamed T29342: Workbench reports excessive RAM usage on MacOSX Monterey from In the beginning of the installer there is a error message that MITK is not from a proven developer. You need to enforce the opening by the system preferences. This is also the case by the official version – just that you know. On the button right is the memory usage displayed. It says that I’m using 34,98 GB (218,61%)… (I only have 16GB physical memory) to Starting error message on MacOSX Monterey for MitkWorkbench.

Oct 10 2022, 11:15 AM · Checklist, MITK (v2022.10)

• s349i triaged T29342: Workbench reports excessive RAM usage on MacOSX Monterey as Normal priority.

Oct 10 2022, 11:15 AM · Checklist, MITK (v2022.10)

• s349i updated the task description for T29341: Moving the LevelWindow slider too many times at extreme ranges makes MITK crash..

Oct 10 2022, 11:05 AM · Cleared, Checklist, MITK (v2022.10)

• s349i updated the task description for T29340: Colored pixels remain unchanged, even when sliding the Level Window slider to low numbers.

Oct 10 2022, 11:04 AM · Next Milestone, Missing Info, Checklist

• s349i updated the task description for T29340: Colored pixels remain unchanged, even when sliding the Level Window slider to low numbers.

Oct 10 2022, 11:01 AM · Next Milestone, Missing Info, Checklist

• s349i updated the task description for T29341: Moving the LevelWindow slider too many times at extreme ranges makes MITK crash..

Oct 10 2022, 11:01 AM · Cleared, Checklist, MITK (v2022.10)

• s349i updated the task description for T29341: Moving the LevelWindow slider too many times at extreme ranges makes MITK crash..

Oct 10 2022, 11:00 AM · Cleared, Checklist, MITK (v2022.10)

• s349i triaged T29341: Moving the LevelWindow slider too many times at extreme ranges makes MITK crash. as Normal priority.

Oct 10 2022, 11:00 AM · Cleared, Checklist, MITK (v2022.10)

• s349i triaged T29340: Colored pixels remain unchanged, even when sliding the Level Window slider to low numbers as Normal priority.

Oct 10 2022, 10:58 AM · Next Milestone, Missing Info, Checklist

Oct 7 2022

• s349i triaged T29337: Global Reinit HotKey functionality not there in Mac OSX as Normal priority.

Oct 7 2022, 3:26 PM · MITK (v2024.12), Cleared, Checklist

• s349i triaged T29336: Changing theme in Preferences has no effect. as Normal priority.

Oct 7 2022, 3:22 PM · MITK, Checklist

Oct 6 2022

• s349i triaged T29330: Picking Tool shows peculiar behaviour in relabel mode for dynamic Segmentations. as Unbreak Now! priority.

Oct 6 2022, 7:02 PM · Cleared, Checklist, MITK (v2022.10)

• s349i renamed T29329: GrowCut Filter does not work dynamic segmentations with 4D Data from GrowItk Filter does not work dynamic segmentations with 4D Data to GrowCut Filter does not work dynamic segmentations with 4D Data.

Oct 6 2022, 5:10 PM · Checklist, MITK (v2022.10)

• s349i triaged T29329: GrowCut Filter does not work dynamic segmentations with 4D Data as Unbreak Now! priority.

Oct 6 2022, 5:09 PM · Checklist, MITK (v2022.10)

Sep 28 2022

• s349i updated the task description for T28798: [Segmentation][MultiLabel][Utilities] UI is inconsistent / unstable.

Sep 28 2022, 9:16 AM · MITK (v2024.06), Checklist

Sep 26 2022

• s349i updated the task description for T28798: [Segmentation][MultiLabel][Utilities] UI is inconsistent / unstable.

Sep 26 2022, 9:41 AM · MITK (v2024.06), Checklist

• s349i updated the task description for T28798: [Segmentation][MultiLabel][Utilities] UI is inconsistent / unstable.

Sep 26 2022, 9:28 AM · MITK (v2024.06), Checklist

Sep 14 2022

• s349i added a subtask for T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View: T29060: [Segmentation] Glitch in label color after 3d-interpolation.

Sep 14 2022, 10:46 AM · MITK (v2023.04), Restricted Project

• s349i added a parent task for T29060: [Segmentation] Glitch in label color after 3d-interpolation: T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View.

Sep 14 2022, 10:46 AM · MITK (v2023.04), Checklist

• s349i claimed T29060: [Segmentation] Glitch in label color after 3d-interpolation.

Sep 14 2022, 10:46 AM · MITK (v2023.04), Checklist

• s349i added a subtask for T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View: T29105: [3D Surface Interpolation] 3D+t Interpolation Preview Crashes When Going Through Different Time Steps.

Sep 14 2022, 10:42 AM · MITK (v2023.04), Restricted Project

• s349i added a parent task for T29105: [3D Surface Interpolation] 3D+t Interpolation Preview Crashes When Going Through Different Time Steps: T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View.

Sep 14 2022, 10:42 AM · Breaking Change, MITK (v2024.06), Checklist

• s349i claimed T29105: [3D Surface Interpolation] 3D+t Interpolation Preview Crashes When Going Through Different Time Steps.

Sep 14 2022, 10:41 AM · Breaking Change, MITK (v2024.06), Checklist

Aug 30 2022

• s349i changed the visibility for F2564298: 5_manually_add_again.PNG.

Aug 30 2022, 11:40 AM

• s349i changed the visibility for F2564303: 3_back_create_new_label.PNG.

Aug 30 2022, 11:40 AM

• s349i changed the visibility for F2564302: 1_save_results.PNG.

Aug 30 2022, 11:40 AM

• s349i changed the visibility for F2564301: 2_open_new_task.PNG.

Aug 30 2022, 11:40 AM

• s349i changed the visibility for F2564300: 4_new_label_not_shown.PNG.

Aug 30 2022, 11:40 AM

• s349i changed the visibility for F2564299: 6_its_back.PNG.

Aug 30 2022, 11:40 AM

• s349i changed the visibility for F2564298: 5_manually_add_again.PNG.

Aug 30 2022, 11:39 AM

• s349i placed T29274: Label Loss on repeatedly loaded and saved segmentations up for grabs.

Aug 30 2022, 11:34 AM · MITK

• s349i added a subtask for T29157: NCT ISSO Annotation Support with MITK Segmentation Flow: T29274: Label Loss on repeatedly loaded and saved segmentations.

Aug 30 2022, 11:28 AM · Moved to git.dkfz.de, MITK (v2024.12)

• s349i added a parent task for T29274: Label Loss on repeatedly loaded and saved segmentations: T29157: NCT ISSO Annotation Support with MITK Segmentation Flow.

Aug 30 2022, 11:28 AM · MITK

• s349i updated the task description for T29274: Label Loss on repeatedly loaded and saved segmentations.

Aug 30 2022, 11:27 AM · MITK

• s349i updated the task description for T29274: Label Loss on repeatedly loaded and saved segmentations.

Aug 30 2022, 11:26 AM · MITK

• s349i updated the task description for T29274: Label Loss on repeatedly loaded and saved segmentations.

Aug 30 2022, 11:24 AM · MITK

• s349i updated the task description for T29274: Label Loss on repeatedly loaded and saved segmentations.

Aug 30 2022, 11:23 AM · MITK

• s349i created T29274: Label Loss on repeatedly loaded and saved segmentations.

Aug 30 2022, 11:22 AM · MITK

Jul 18 2022

• s349i added a comment to T29193: [SEG] Add a superpixel tool.

One thing to consider might be, is SLIC even useful? If neural networks are going to be taking care of segmentation anyway, what is it's likely sell-by date? This depends on how quickly NN based segmentation algorithms are incorporated into MITK.

Jul 18 2022, 11:01 AM · MITK (v2024.06)

Jul 14 2022

• s349i added a comment to T29193: [SEG] Add a superpixel tool.

Ah OK. Thats a decision above my pay grade.

Jul 14 2022, 6:01 PM · MITK (v2024.06)

• s349i added a comment to T29193: [SEG] Add a superpixel tool.

only 2D are also 3D?

Jul 14 2022, 4:22 PM · MITK (v2024.06)

• s349i added a revision to T29106: [Segmentation Options] "show only selected nodes" is not immediately applied: Unknown Object (Differential Revision).

Jul 14 2022, 3:18 PM · MITK (v2022.10), Checklist

Jul 12 2022

• s349i claimed T29106: [Segmentation Options] "show only selected nodes" is not immediately applied.

Jul 12 2022, 3:48 PM · MITK (v2022.10), Checklist

• s349i claimed T28491: [Segmentation] Slice interpolation 'confirm for all slices' sometimes crahes.

Jul 12 2022, 3:32 PM · MITK (v2023.12)

• s349i added a revision to T28180: [Segmentation] Showing a previously hidden reference image requires a reinit: Unknown Object (Differential Revision).

Jul 12 2022, 3:14 PM · MITK (v2022.10)

• s349i claimed T28180: [Segmentation] Showing a previously hidden reference image requires a reinit.

Jul 12 2022, 2:19 PM · MITK (v2022.10)

• s349i added a comment to T28180: [Segmentation] Showing a previously hidden reference image requires a reinit.

First experiment is valid. Tools are enabled only after the step 9 reinit.

Jul 12 2022, 10:46 AM · MITK (v2022.10)

Jul 8 2022

• s349i triaged T29225: Rule Checker for FlowBench as Normal priority.

Jul 8 2022, 9:56 AM · MITK

Jun 30 2022

• s349i closed T29184: Replace itkContourExtractor2DImageFilter as Resolved.

Jun 30 2022, 5:00 PM · MITK, Request for Discussion

• s349i added a comment to T29184: Replace itkContourExtractor2DImageFilter .

I've replaced the function used from Modules/Segmentation/Algorithms/itkContourExtractor2DImageFilter.h with a Unary Functor that uses itk only. The file is no longer useful. Maybe I'll delete it and close this if no one objects. The itk file with the same name will be superseded by the one provided by itk with the same name.

Jun 30 2022, 5:00 PM · MITK, Request for Discussion

May 31 2022

• s349i added a comment to T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View.

D657 should give surface interpolation multilablel functionality. Contour interpolation also partially.

May 31 2022, 11:15 AM · MITK (v2023.04), Restricted Project

• s349i removed a project from T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View: Cleared.

May 31 2022, 8:04 AM · MITK (v2023.04), Restricted Project

May 30 2022

• s349i added a comment to T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View.

Pushed new branch to rMITK MITK: feature/T27319-multilabelInterpolation.

May 30 2022, 11:43 AM · MITK (v2023.04), Restricted Project

May 18 2022

• s349i added a project to T29184: Replace itkContourExtractor2DImageFilter : MITK.

May 18 2022, 1:01 PM · MITK, Request for Discussion

• s349i created T29184: Replace itkContourExtractor2DImageFilter .

May 18 2022, 1:00 PM · MITK, Request for Discussion

May 16 2022

• s349i added a comment to T26172: 2D interpolation in MultiLabelSegmentation Editor only works for 1. label .

Yes. My work will take care of this. Just need to finish off the label merging for individual slices.

May 16 2022, 1:24 PM · MITK (v2023.04)

• s349i claimed T26172: 2D interpolation in MultiLabelSegmentation Editor only works for 1. label .

May 16 2022, 1:23 PM · MITK (v2023.04)

• s349i claimed T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View.

May 16 2022, 1:23 PM · MITK (v2023.04), Restricted Project

Apr 27 2022

• s349i added a comment to T28982: Weak Label Annotation Picking Tool.

After the meeting with @floca, Ahmad, Silvia and Jan, they have said that Ralf's suggested union mode would definitely be more appreciated. The task T29146 describes the union mode in a bit more detail. T
They also mentioned that by default they would prefer not to have any locks on the labels.
Additionally, they would also like the picking tool to work across layers, but @floca suggested we implement this feature subsequently after the new mitk::MultiImage data-structure is finished.

Apr 27 2022, 8:18 AM · MITK (v2022.10), Request for Discussion

• s349i added a parent task for T29146: Union Mode for the picking tool: T28982: Weak Label Annotation Picking Tool.

Apr 27 2022, 7:53 AM · MITK (v2022.10)

• s349i added a subtask for T28982: Weak Label Annotation Picking Tool: T29146: Union Mode for the picking tool.

Apr 27 2022, 7:53 AM · MITK (v2022.10), Request for Discussion

• s349i created T29146: Union Mode for the picking tool.

Apr 27 2022, 7:52 AM · MITK (v2022.10)

Mar 31 2022

• s349i created T29105: [3D Surface Interpolation] 3D+t Interpolation Preview Crashes When Going Through Different Time Steps.

Mar 31 2022, 12:00 PM · Breaking Change, MITK (v2024.06), Checklist

Mar 30 2022

• s349i renamed T29088: [Checklist] 3D Segmentation - Checklist and MITK UI Inconsistencies from [3D Segmentation] 3D Segmentation Tools - Checklist and MITK UI Inconsistencies to [3D Segmentation] 3D Segmentation Checklist - Checklist and MITK UI Inconsistencies.

Mar 30 2022, 4:24 PM · MITK (v2022.04), Checklist

• s349i created T29102: [3D Segmentation] Picking Tool - Problem deleting picked regions..

Mar 30 2022, 4:24 PM · Cleared, Checklist, MITK (v2022.04)

• s349i renamed T29088: [Checklist] 3D Segmentation - Checklist and MITK UI Inconsistencies from [Segmentation] 3D Segmentation Tools - Checklist and MITK UI Inconsistencies to [3D Segmentation] 3D Segmentation Tools - Checklist and MITK UI Inconsistencies.

Mar 30 2022, 4:17 PM · MITK (v2022.04), Checklist

• s349i renamed T29089: [3D Segmentation] 3D Segmentation - Color cycle resets with the new layer. from [Segmentation] 3D Segmentation - Color cycle resets with the new layer. to [3D Segmentation] 3D Segmentation - Color cycle resets with the new layer..

Mar 30 2022, 4:17 PM · MITK (v2022.04), Checklist

• s349i renamed T29096: [3D Segmentation] Threshold Tool - Does not handle multiple labels. from [Segmentation] Threshold Tool - Does not handle multiple labels. to [3D Segmentation] Threshold Tool - Does not handle multiple labels..

Mar 30 2022, 4:17 PM · Checklist, MITK (v2022.04)

• s349i renamed T29097: [3D Segmentation] UL Threshold Tool - Does not handle multiple labels. from [Segmentation] UL Threshold Tool - Does not handle multiple labels. to [3D Segmentation] UL Threshold Tool - Does not handle multiple labels..

Mar 30 2022, 4:17 PM · Checklist, MITK (v2022.04)

• s349i renamed T29098: [3D Segmentation] UL Threshold Tool - 0 intensity value not include in slider range? from [Segmentation] UL Threshold Tool - 0 intensity value not include in slider range? to [3D Segmentation] UL Threshold Tool - 0 intensity value not include in slider range?.

Mar 30 2022, 4:17 PM · MITK (v2024.12), Restricted Project, Checklist

• s349i updated the task description for T29101: [3D Segmentation] Region Growing Tool - Generated Segmentation darkens the ambient image.

Mar 30 2022, 4:15 PM · MITK, Checklist

• s349i created T29101: [3D Segmentation] Region Growing Tool - Generated Segmentation darkens the ambient image.

Mar 30 2022, 4:14 PM · MITK, Checklist

• s349i created T29100: [3D Segmentation] Otsu Tool - Better Preview Region Clicking Behaviour.

Mar 30 2022, 4:03 PM · Checklist, MITK (v2022.04)

• s349i created T29099: [3D Segmentation] Otsu Tool - Does not handle multiple labels..

Mar 30 2022, 4:00 PM · Checklist, MITK (v2022.04)

• s349i created T29098: [3D Segmentation] UL Threshold Tool - 0 intensity value not include in slider range?.

Mar 30 2022, 3:51 PM · MITK (v2024.12), Restricted Project, Checklist

• s349i created T29097: [3D Segmentation] UL Threshold Tool - Does not handle multiple labels..