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Apr 30 2019

reicht assigned T26299: [Webbased DICOM parsing and file handling] to d485r.
Apr 30 2019, 1:28 PM · CSI-HD
reicht moved T26299: [Webbased DICOM parsing and file handling] from RM ToDo to DKFZ ToDo on the CSI-HD board.
Apr 30 2019, 1:27 PM · CSI-HD
reicht moved T26301: Browserbased parsing and identification of DICOM files from RM ToDo to DKFZ ToDo on the CSI-HD board.
Apr 30 2019, 1:27 PM · CSI-HD
reicht moved T26306: Identify a web-framework to operate a Server from RM ToDo to DKFZ ToDo on the CSI-HD board.
Apr 30 2019, 1:27 PM · CSI-HD
reicht moved T26307: Identify a proper Transfer technology from RM ToDo to DKFZ ToDo on the CSI-HD board.
Apr 30 2019, 1:27 PM · CSI-HD
reicht moved T26308: Encrypt tranfers from RM ToDo to DKFZ ToDo on the CSI-HD board.
Apr 30 2019, 1:26 PM · CSI-HD
reicht created T26308: Encrypt tranfers.
Apr 30 2019, 1:26 PM · CSI-HD
reicht created T26307: Identify a proper Transfer technology.
Apr 30 2019, 1:25 PM · CSI-HD
reicht created T26306: Identify a web-framework to operate a Server.
Apr 30 2019, 1:24 PM · CSI-HD
reicht removed a subtask for T26301: Browserbased parsing and identification of DICOM files: Unknown Object (Maniphest Task).
Apr 30 2019, 1:16 PM · CSI-HD
reicht created T26301: Browserbased parsing and identification of DICOM files.
Apr 30 2019, 1:07 PM · CSI-HD
reicht added a subtask for T26299: [Webbased DICOM parsing and file handling]: Unknown Object (Maniphest Task).
Apr 30 2019, 1:04 PM · CSI-HD
reicht created T26299: [Webbased DICOM parsing and file handling].
Apr 30 2019, 1:04 PM · CSI-HD
kislinsk added a comment to T26237: Improve performance for interactions in 2d widgets.

@maleike NV210? According to google this GPU was released in 2003. I'm surprised that you can see anything at all as OpenGL 3.x was released between 2008 and 2010. As you guys have quite powerful CPUs and lots of RAM I guess you have rather recent workstations except the GPUs. Is there a specific reason to stick with such old GPUs? No offense here, it's just noticable. You get a HUGE performance boost even with a silent low-end GTX 1050 without extra power supply for around 140 €.

Apr 30 2019, 1:03 PM · MITK
kislinsk added a comment to T26237: Improve performance for interactions in 2d widgets.

@wegner It's the Nvidia screen recording which comes right with the driver resp. GeForce Experience application and utilizes the GPU directy to record the screen content. Not sure if it works with a 2012 GPU, though.

Apr 30 2019, 12:53 PM · MITK
kislinsk added a comment to T26237: Improve performance for interactions in 2d widgets.

My bet is on the "new" OpenGL 3.x rendering backend of VTK as we didn't change anything else in this area of MITK in the past years. Especially non-mainstream GPUs from around 2011-2012 are the ones which tend to somehow work but not in a satisfactory way regarding OpenGL 3.x. Unfortunately Nvidia doesn't continue to provide current drivers for GPUs this old as far as I know which would be usually my first advise to check.

Apr 30 2019, 12:50 PM · MITK
maleike added a comment to T26237: Improve performance for interactions in 2d widgets.

(Didn't see latest comments from yesterday evening, was typing the following while only the initial comments of Stefan were visible in my browser)

Apr 30 2019, 12:27 PM · MITK
wegner added a comment to T26237: Improve performance for interactions in 2d widgets.

Wow, that looks nice!
No, that's not what I have seen on my desktop, or a laptop or a Windows virtual machine, that used to work well with the older MITK version (2016.03.0).
I will check on a recording solution (which one did you use?) and do the same on my side...

Apr 30 2019, 11:26 AM · MITK
wegner added a comment to T26237: Improve performance for interactions in 2d widgets.

By the way, the test system was on Windows 7!

Apr 30 2019, 11:22 AM · MITK
kalali added a revision to T26270: Update MatchPoint third party file: Unknown Object (Differential Revision).
Apr 30 2019, 10:34 AM · MITK
kalali committed rMITK0b251023c917: Update new version of MatchPoint (authored by kalali).
Update new version of MatchPoint
Apr 30 2019, 10:30 AM
kislinsk added a comment to T26237: Improve performance for interactions in 2d widgets.

Thanks for measuring! I downloaded the latest zip installer and roughly did what I think you did as well. Recorded at 1080p @ 60 Hz, encoded in 720p (same H/W as mentioned in my last post). I think this is completely different from your experience, right?

Apr 30 2019, 2:42 AM · MITK

Apr 29 2019

wegner added a comment to T26237: Improve performance for interactions in 2d widgets.

Hi,
measurements on my side
mitk v2018.04.2 (zip downloaded from webside) with pic3d.nrrd (106.478KB), a fresh generated binary dataset and with Segmentation Add Tool (NVIDIA Quadro K5000, Full HD resolution, 60Hz refresh rate, three displays connected, Intel Xeon E5-2687w 3,4GHz (2 processors, 32cores in total), 64 GB RAM (I admit, a few years old, but still better than any standard PC ;) )
->measured with fraps
2d widgets: 20 Hz, going down over time
3D widgets: 60Hz, stable over time as no segmentation interaction is going on.

Apr 29 2019, 5:45 PM · MITK
GitHub <noreply@github.com> committed rOBSHYPPOPY8c91964f7cc1: Update README.md (authored by s635r).
Update README.md
Apr 29 2019, 3:32 PM
s635r committed rOBSHYPPOPYb3cb5536ec2e: Solver comparison report added (authored by s635r).
Solver comparison report added
Apr 29 2019, 3:32 PM
s635r committed rOBSHYPPOPYe63835dcb200: report added (authored by s635r).
report added
Apr 29 2019, 3:32 PM
s635r committed rOBSHYPPOPY48559a44a24c: define hyperparameter - solver interface check works, all tests and examples… (authored by s635r).
define hyperparameter - solver interface check works, all tests and examples…
Apr 29 2019, 3:32 PM
s635r committed rOBSHYPPOPYaf915bc03a64: solver children now define their interface using an abstract function and… (authored by s635r).
solver children now define their interface using an abstract function and…
Apr 29 2019, 3:32 PM
s635r committed rOBSHYPPOPY8b826325b6eb: test fixes quasirandomsearch and global default iterations removed (authored by s635r).
test fixes quasirandomsearch and global default iterations removed
Apr 29 2019, 3:32 PM
steint committed rMITK41ab96b0c370: Add DICOMweb.cpp (authored by steint).
Add DICOMweb.cpp
Apr 29 2019, 2:39 PM
steint committed rMITKc7e5ae076b1d: refactor DICOMweb as normal class (authored by steint).
refactor DICOMweb as normal class
Apr 29 2019, 2:39 PM
kislinsk edited projects for T25941: Saving Registered Data in new Coordinate frame, added: MITK; removed MITK (2018-04-4).
Apr 29 2019, 12:51 PM · MITK
floca committed rMITKa0ba9d263118: Merge branch 'T25941-Improve_mapper_view_user_manuel' (authored by floca).
Merge branch 'T25941-Improve_mapper_view_user_manuel'
Apr 29 2019, 10:26 AM
floca committed rMITK4edc1ed9e966: Improved the user manuel of the mapper view (authored by floca).
Improved the user manuel of the mapper view
Apr 29 2019, 10:25 AM
floca added a comment to T25941: Saving Registered Data in new Coordinate frame.

Pushed new branch T25941-Improve_mapper_view_user_manuel.

Apr 29 2019, 10:25 AM · MITK
k656s added a member for Kaapana (internal): kleesiek.
Apr 29 2019, 10:24 AM
floca triaged T25941: Saving Registered Data in new Coordinate frame as Normal priority.

@kislinsk Thanks for the hint.

Apr 29 2019, 10:22 AM · MITK
floca updated the task description for T25988: LabelSetImageIO should support time geometries and property serialization.
Apr 29 2019, 9:42 AM · MITK (v2021.02)
kislinsk edited projects for T25941: Saving Registered Data in new Coordinate frame, added: MITK (2018-04-4); removed MITK.
Apr 29 2019, 6:44 AM · MITK
kislinsk removed a subtask for T25939: DICOM data and Nifti Segmentation don't like each other, 3d+t data: T25988: LabelSetImageIO should support time geometries and property serialization.
Apr 29 2019, 6:33 AM · MITK
kislinsk removed a parent task for T25988: LabelSetImageIO should support time geometries and property serialization: T25939: DICOM data and Nifti Segmentation don't like each other, 3d+t data.
Apr 29 2019, 6:33 AM · MITK (v2021.02)
kislinsk merged T25939: DICOM data and Nifti Segmentation don't like each other, 3d+t data into T25988: LabelSetImageIO should support time geometries and property serialization.
Apr 29 2019, 6:32 AM · MITK (v2021.02)
kislinsk merged task T25939: DICOM data and Nifti Segmentation don't like each other, 3d+t data into T25988: LabelSetImageIO should support time geometries and property serialization.
Apr 29 2019, 6:32 AM · MITK
kislinsk edited projects for T25988: LabelSetImageIO should support time geometries and property serialization, added: MITK (2018-04-4); removed MITK.
Apr 29 2019, 6:32 AM · MITK (v2021.02)
kislinsk triaged T25943: Integrate probe calibration related changes as Normal priority.
Apr 29 2019, 6:26 AM · IMSY, MITK
kislinsk triaged T25981: ModelFit: actualize/fix wiki page as Normal priority.
Apr 29 2019, 6:25 AM · Restricted Project, Restricted Project, MITK
kislinsk triaged T26033: Update ModelFit manual as Normal priority.
Apr 29 2019, 6:25 AM · Restricted Project, MITK
kislinsk triaged T26172: 2D interpolation in MultiLabelSegmentation Editor only works for 1. label as Normal priority.
Apr 29 2019, 6:24 AM · MITK (v2023.04)
kislinsk triaged T26187: Create polygon model works only once as High priority.
Apr 29 2019, 6:22 AM

Apr 26 2019

floca added inline comments to rMITK750daa0b6d2b: Fixed crash for single time step segmentations.
Apr 26 2019, 10:31 PM
kalali committed rMITKddd8db08e2bc: Extend semantic relations functions (authored by kalali).
Extend semantic relations functions
Apr 26 2019, 7:52 PM
kalali committed rMITKc5b320323fbe: First approach for mask volume computation (authored by kalali).
First approach for mask volume computation
Apr 26 2019, 7:52 PM
kalali committed rMITK0c882afdc8de: Add model-view classes for statistics tree (authored by kalali).
Add model-view classes for statistics tree
Apr 26 2019, 7:52 PM
kalali committed rMITK605229d139d8: Simplify and remove update functions (authored by kalali).
Simplify and remove update functions
Apr 26 2019, 7:52 PM
kalali committed rMITKa6da3290eca4: Merge branch 'T25294-Suggest-last-added-segmentation' into T22946-Integration… (authored by kalali).
Merge branch 'T25294-Suggest-last-added-segmentation' into T22946-Integration…
Apr 26 2019, 7:52 PM
kalali committed rMITKd5d58b01ced6: Remove empty destructors (authored by kalali).
Remove empty destructors
Apr 26 2019, 7:51 PM
aguilera added a comment to T23624: Connection to Epiphan frame grabber via OpenCV is buggy.

It can be integrated and used in a plugin when the frmgrab.dll and frmgrab.lib files were in the same folder (\Epiphan\epiphan_sdk-3.30.3.0007\epiphan\frmgrab\lib\win\x64)

Apr 26 2019, 6:58 PM · IMSY, IGT, Restricted Project, MITK
aguilera committed rMITKbf9f60aaecb0: integrate epiphan sdk (authored by aguilera).
integrate epiphan sdk
Apr 26 2019, 6:54 PM
kalali added a comment to T19683: "Show only selected node" changes the visibility of crosshair.

Would be good to leave the baseRenderer as an argument so that you can set the visibility of a specific node in a predefined base renderer (e.g. by using the RenderWindowManager). This is useful when using the new MultiWidget(Editor).

Apr 26 2019, 5:43 PM · Bugzilla, Pull Request, MITK
sridhara committed rMITK4852723b0d17: heatmap-initial (authored by sridhara).
heatmap-initial
Apr 26 2019, 5:25 PM
kausch committed rMITKa053812bd925: Merge branch 'T19683-ShowOnlySelectedNodesCrosshairVisibility' (authored by kausch).
Merge branch 'T19683-ShowOnlySelectedNodesCrosshairVisibility'
Apr 26 2019, 5:13 PM
kausch committed rMITK01b8d7b66f72: Crosshair always stays visible if you choose show selected nodes (authored by kausch).
Crosshair always stays visible if you choose show selected nodes
Apr 26 2019, 3:52 PM
kausch added a comment to T19683: "Show only selected node" changes the visibility of crosshair.

Pushed new branch T19683-ShowOnlySelectedNodesCrosshairVisibility.

Apr 26 2019, 3:52 PM · Bugzilla, Pull Request, MITK
zimmerer closed T25470: Export as csv for experiment browser overview as Resolved.
Apr 26 2019, 3:11 PM · trixi
floca added a comment to T26029: [image statistics plugin] 4D image + 4D segmentation as mask does not work.

I have concerns with the latest commit. See comments there. You can come by and ask if you have any questions.

Apr 26 2019, 1:18 PM · Restricted Project, MITK
floca raised a concern with rMITK750daa0b6d2b: Fixed crash for single time step segmentations.

The fix is not good and has several problems. See comment above. If it is not clear how to handle it properly, just drop by an I can explaine.

Apr 26 2019, 1:18 PM
petersej closed T23470: Markdown for Python Example Project as Resolved.

No longer relevant

Apr 26 2019, 11:44 AM · MITK
kausch committed rMITK750daa0b6d2b: Fixed crash for single time step segmentations (authored by kausch).
Fixed crash for single time step segmentations
Apr 26 2019, 11:40 AM
kausch added a comment to T26029: [image statistics plugin] 4D image + 4D segmentation as mask does not work.

Solution: GetStatisticsForTimeStep method now returns an empty StatisticsObject if no mask is provided for this time step. Thus, histogram and table are empty for those time steps.
Discussion: 1. 4D image + 3D segmentation

  1. 4D image (5 time steps) + 4D segmentation (1 time step)

@hentsch Is the one time step segmentation applied to all time steps? What is the expected behavior?

Apr 26 2019, 11:39 AM · Restricted Project, MITK
petersej closed T26183: Joint running and testing of experiments as Resolved.

There is a setup option for .run_test, just set that to False

Apr 26 2019, 11:37 AM · trixi
kislinsk triaged T26294: Should we move DICOMPropertyPath helper to Core as Wishlist priority.
Apr 26 2019, 11:20 AM · MITK (v2024.06), DICOM
floca moved T26294: Should we move DICOMPropertyPath helper to Core from Backlog to MITK Meeting on the Request for Discussion board.
Apr 26 2019, 10:29 AM · MITK (v2024.06), DICOM
floca created T26294: Should we move DICOMPropertyPath helper to Core.
Apr 26 2019, 10:28 AM · MITK (v2024.06), DICOM
kausch committed rMITK3d5ca7a31524: Error not reproducable with 3D+t-Heart (authored by kausch).
Error not reproducable with 3D+t-Heart
Apr 26 2019, 10:28 AM
kausch added a comment to T26029: [image statistics plugin] 4D image + 4D segmentation as mask does not work.

Pushed new branch T26029-4DImageAnd4DSegmentation.

Apr 26 2019, 10:15 AM · Restricted Project, MITK
floca moved T25496: Visualize RTDOSE correctly from Backlog to MITK Meeting on the Request for Discussion board.
Apr 26 2019, 9:54 AM · MITK
ervaibhavkumar triaged T26292: Issue while building MITK tag v2018..04.2 with Python support as High priority.
Apr 26 2019, 8:24 AM · MITK (2018-04-2)

Apr 25 2019

kislinsk created petersej.
Apr 25 2019, 3:49 PM
ervaibhavkumar created T26292: Issue while building MITK tag v2018..04.2 with Python support.
Apr 25 2019, 11:07 AM · MITK (2018-04-2)

Apr 24 2019

floca committed rMITK7ef1b6556231: Fixed T26287 (authored by floca).
Fixed T26287
Apr 24 2019, 3:47 PM
floca closed T26287: MRI Perfusion crashes (sometimes) when using signal to concentration conversion as Resolved by committing rMITK7ef1b6556231: Fixed T26287.
Apr 24 2019, 3:47 PM · MITK
floca updated subscribers of T26289: MatchPoint causes warnings during SuperBuild.

@kislinsk Stefan, you said you reworked this pragma for MITK? Does it implie any changes for 3rd party projects?

Apr 24 2019, 1:31 PM · MITK, MatchPoint
floca closed T23808: Add Rule base class for DICOM source imagereferences, a subtask of T23754: DataStorage/Relationship clean up/refactoring, as Resolved.
Apr 24 2019, 1:29 PM · MITK
floca closed T23808: Add Rule base class for DICOM source imagereferences as Resolved.
Apr 24 2019, 1:29 PM · MITK
floca committed rMITKa36581e59950: First implementation of ImageToImageRelationRule (authored by floca).
First implementation of ImageToImageRelationRule
Apr 24 2019, 12:59 PM
floca committed rMITKb7c916ea357f: Fixed review issues D195 (authored by floca).
Fixed review issues D195
Apr 24 2019, 10:31 AM
steint added a comment to rMITK0d470ff3225f: Load micro services successfully.

Please do not merge these MITK_INFOs in the REST moduels into the master. Currently, they can be considered noise. We can discuss a few more MITK_INFOs but then with more actual information.

Apr 24 2019, 9:22 AM
kislinsk added a comment to rMITK0d470ff3225f: Load micro services successfully.

Please do not merge these MITK_INFOs in the REST moduels into the master. Currently, they can be considered noise. We can discuss a few more MITK_INFOs but then with more actual information.

Apr 24 2019, 9:20 AM
steint committed rMITK0d470ff3225f: Load micro services successfully (authored by steint).
Load micro services successfully
Apr 24 2019, 8:33 AM

Apr 23 2019

neher committed rMITKb3f7dc19d888: Adapt default value (authored by neher).
Adapt default value
Apr 23 2019, 3:44 PM
neher committed rMITK34a75a9ad325: Fiber cutting (authored by neher).
Fiber cutting
Apr 23 2019, 2:39 PM
kalali committed rMITK6100739c8144: Store last added segmentation node and use it as a suggestion for a newly added… (authored by kalali).
Store last added segmentation node and use it as a suggestion for a newly added…
Apr 23 2019, 1:15 PM
kalali committed rMITKe29e504d7aae: Merge branch 'T25294-Link-to-new-segmentations' into T22946-Integration-beta (authored by kalali).
Merge branch 'T25294-Link-to-new-segmentations' into T22946-Integration-beta
Apr 23 2019, 1:15 PM
kalali committed rMITKd60724be3480: Automatically add / remove corresponding images / segmentations (authored by kalali).
Automatically add / remove corresponding images / segmentations
Apr 23 2019, 1:15 PM
sattler committed rMITK81dcb6329d48: Merge branch 'T26060-MITK-PhotoacousticsBFToolIPPAI' (authored by sattler).
Merge branch 'T26060-MITK-PhotoacousticsBFToolIPPAI'
Apr 23 2019, 12:48 PM
sattler committed rMITK7d1fb8c46a57: changed the xml structure for the PABeamformingTool (authored by sattler).
changed the xml structure for the PABeamformingTool
Apr 23 2019, 12:47 PM
sattler added a comment to T26060: Command-line interface for PhotoacousticsAlgorithms.

Pushed new branch T26060-MITK-PhotoacousticsBFToolIPPAI.

Apr 23 2019, 12:47 PM · MITK, Photoacoustics

Apr 22 2019

kalali committed rMITKc08254ed1b89: Merge branch 'T25294-Lesion-info-without-statistics' into T22946-Integration… (authored by kalali).
Merge branch 'T25294-Lesion-info-without-statistics' into T22946-Integration…
Apr 22 2019, 7:28 PM
kalali committed rMITK12659c55757b: Add segmentation (and image) if linked to lesion (authored by kalali).
Add segmentation (and image) if linked to lesion
Apr 22 2019, 7:28 PM
kalali committed rMITK3df03bc34e6f: Temporarily remove the second lesion tree item that shows example volume (authored by kalali).
Temporarily remove the second lesion tree item that shows example volume
Apr 22 2019, 6:48 PM