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Oct 23 2018

kalali added a comment to T25042: How to handle update informations in heterogeneous time geometries and out of bound situations .

Is this fixed with 50b8977b3486?

Oct 23 2018, 10:43 AM · MITK

Oct 17 2018

kislinsk closed T24563: Superbuild: Boost build fails in RelWithDebInfo, a subtask of T24615: Make Boost build robust, as Resolved.
Oct 17 2018, 1:42 PM · MITK (2018-04)
kislinsk closed T24222: FindBoost does not work with superbuild boost, a subtask of T24615: Make Boost build robust, as Resolved.
Oct 17 2018, 1:41 PM · MITK (2018-04)
kislinsk added a comment to T24333: Noteworthy new features since MITK 2016.11.

MITK_PP_ macros were replaced with their original BOOST_PP_ counterparts. Only mitkPPArgCount.h is left as it doesn't originate from Boost.

Oct 17 2018, 9:41 AM · MITK (2018-04)
kislinsk added a comment to T24615: Make Boost build robust.

Pushed new branch T24615-FixBoostRelatedIssues.

Oct 17 2018, 9:27 AM · MITK (2018-04)
kislinsk closed T20093: Remove mangled boost headers, a subtask of T24615: Make Boost build robust, as Resolved.
Oct 17 2018, 9:26 AM · MITK (2018-04)
kislinsk closed T19550: [CMake 3.5] Use Boost imported targets, a subtask of T24615: Make Boost build robust, as Resolved.
Oct 17 2018, 8:57 AM · MITK (2018-04)

Oct 16 2018

kislinsk closed T24993: DICOM Plugin doesn't build as Resolved.

Fixed in beta branch. Turned out it wasn't found on Linux and macOS at least since 2013. I just double-checked the 2016.11 installers and storescp was set manually back then.

Oct 16 2018, 2:55 PM · MITK (2018-04)
tsvetkov added a comment to T25435: time function for segmentation tasks of 2d/3d+t data.

Pushed new branch T25435-TimeFunctionF10.

Oct 16 2018, 1:01 PM · MITK (2018-04)
kislinsk closed T25526: Workbench crashes when double-clicking on multilabel-segmentation label using 3D+t images as Resolved.
Oct 16 2018, 10:39 AM · MITK (2018-04)
kislinsk added a comment to T25526: Workbench crashes when double-clicking on multilabel-segmentation label using 3D+t images .

Pushed new branch T25526-DoubleClickOnLabelItemCrash.

Oct 16 2018, 10:38 AM · MITK (2018-04)
kislinsk added a comment to T25526: Workbench crashes when double-clicking on multilabel-segmentation label using 3D+t images .

This error occurs when double-clicking on a label (no need for a second label to be present), or when searching for a label. Both code paths end in a request to update the label's center of the mass which is currently not compiled for four-dimensional images.

Oct 16 2018, 10:36 AM · MITK (2018-04)
kislinsk edited projects for T25435: time function for segmentation tasks of 2d/3d+t data, added: MITK (2018-04); removed MITK.
Oct 16 2018, 8:59 AM · MITK (2018-04)
full triaged T25526: Workbench crashes when double-clicking on multilabel-segmentation label using 3D+t images as High priority.
Oct 16 2018, 8:52 AM · MITK (2018-04)

Oct 12 2018

kislinsk edited projects for T24615: Make Boost build robust, added: MITK (2018-04); removed Request for Discussion, MITK.
Oct 12 2018, 5:25 PM · MITK (2018-04)
nolden closed T25469: Improve MITK build experience as Resolved.

Ok, warning level harmonization for Linux and Windows turns out to be impossible at the moment, we have to wait for MSVC updates. The other ideas have been fixed and merged.

Oct 12 2018, 4:11 PM · MITK (2018-04)

Oct 10 2018

floca added a comment to T24333: Noteworthy new features since MITK 2016.11.

Propertylist has more strict behavior. Only none empty strings are allows as property key. Property list now also implements the PropertyOwner interface.
Introduced with T25441: Name DataNodes with DICOM data appropriately by using dicom tags

Oct 10 2018, 9:28 AM · MITK (2018-04)

Oct 5 2018

kislinsk closed T25495: Memory Leak in QmitkSegmentationOrganNamesHandling as Resolved.
Oct 5 2018, 11:20 AM · MITK (2018-04)
kislinsk reopened T25495: Memory Leak in QmitkSegmentationOrganNamesHandling as "Open".
Oct 5 2018, 10:02 AM · MITK (2018-04)
kislinsk closed T24790: Build fails on Fedora 28 as Resolved.
Oct 5 2018, 9:18 AM · MITK (2018-04)
kislinsk closed T25495: Memory Leak in QmitkSegmentationOrganNamesHandling as Resolved.
Oct 5 2018, 8:57 AM · MITK (2018-04)
kislinsk added a comment to T25495: Memory Leak in QmitkSegmentationOrganNamesHandling.

Found same leak also in mitk::DICOMSegmentationPropertyHelper.

Oct 5 2018, 8:57 AM · MITK (2018-04)
kislinsk added a comment to T25495: Memory Leak in QmitkSegmentationOrganNamesHandling.

Pushed new branch T25495-MemoryLeak.

Oct 5 2018, 8:54 AM · MITK (2018-04)
kislinsk triaged T25495: Memory Leak in QmitkSegmentationOrganNamesHandling as Normal priority.
Oct 5 2018, 8:51 AM · MITK (2018-04)

Oct 1 2018

kislinsk added a comment to T25469: Improve MITK build experience.

I (hopefully) improved our CMake script by hint find_package(Qt5) at Qt default install locations (C:/Qt). Only MSVC for now, Linux and macOS are following tomorrow with /opt/Qt and ~/Qt.

Oct 1 2018, 9:40 PM · MITK (2018-04)
kislinsk moved T25186: Set version information from Backlog to Blocking v2018.04 on the MITK (2018-04) board.
Oct 1 2018, 12:25 PM · MITK (2018-04)
kislinsk moved T25469: Improve MITK build experience from Blocking v2018.04 to Backlog on the MITK (2018-04) board.
Oct 1 2018, 12:25 PM · MITK (2018-04)
kislinsk moved T25469: Improve MITK build experience from Backlog to Blocking v2018.04 on the MITK (2018-04) board.
Oct 1 2018, 12:25 PM · MITK (2018-04)
kislinsk triaged T25469: Improve MITK build experience as Normal priority.
Oct 1 2018, 12:25 PM · MITK (2018-04)

Sep 21 2018

floca added a comment to T23343: Dicom editor can not load dicom segmentation objects.

As far as I can see (had to dig through the commits) All changes of this branch, have already been cherry picked to the master at some point. (Don't know if they are also already in the current beta brunch).

Sep 21 2018, 2:40 PM · MICO (Demo MICCAI 2018), MITK (2018-04)

Sep 14 2018

eisenman added a comment to T24754: Volume Visualization crashes with some CT images.

The issue still occurs on both Windows and Linux systems. The transfer function widget seems to be initialized correctly. The last MITK method called before diving into VTK internals mentioned above is VtkMapper::MitkRenderVolumetricGeometry.

Sep 14 2018, 6:27 PM · Restricted Project, MITK

Sep 6 2018

floca placed T24575: Matchpoint documentation is missing some images up for grabs.
Sep 6 2018, 3:53 PM · MITK
floca edited projects for T24575: Matchpoint documentation is missing some images, added: MITK (2018-04); removed MITK.
Sep 6 2018, 3:52 PM · MITK

Sep 5 2018

metzger edited projects for T23343: Dicom editor can not load dicom segmentation objects, added: MICO (Demo MICCAI 2018); removed MICO (Demo_MICCAI_2017).
Sep 5 2018, 6:57 PM · MICO (Demo MICCAI 2018), MITK (2018-04)

Aug 30 2018

nolden closed T24948: MITK doesn't build with gcc 8 as Resolved.
Aug 30 2018, 2:53 PM · MITK (2018-04)
nolden added a comment to T24790: Build fails on Fedora 28.

update: gcc works

Aug 30 2018, 2:52 PM · MITK (2018-04)
floca closed T24840: Update MatchPoint icons as Resolved by committing rMITK690b4ffb160c: Fixed T24840.
Aug 30 2018, 10:16 AM · MITK (2018-04)

Aug 29 2018

floca updated the task description for T25098: Mapper (partially?) do not handle images correctly if they are out of time bound.
Aug 29 2018, 12:21 PM · MITK (v2024.06)
floca updated the task description for T25098: Mapper (partially?) do not handle images correctly if they are out of time bound.
Aug 29 2018, 12:20 PM · MITK (v2024.06)

Aug 28 2018

milano added a comment to T25267: MatchPoint build errors.

I can confirm that in version 15.8.1 this is also happening in Debug, without any global optimization. I have already reported this, hope they will fix it soon.

Aug 28 2018, 6:13 PM · MITK (2018-04)

Aug 27 2018

groehl claimed T25298: Remove not working Photoacoustic tests.
Aug 27 2018, 9:58 AM · MITK (2018-04)
groehl closed T25298: Remove not working Photoacoustic tests as Resolved.

Pushed fix to beta

Aug 27 2018, 9:58 AM · MITK (2018-04)
groehl closed T25298: Remove not working Photoacoustic tests, a subtask of T25191: v2018.04-beta, as Resolved.
Aug 27 2018, 9:58 AM · MITK (2018-04)
groehl added a comment to T25298: Remove not working Photoacoustic tests.

Pushed new branch T25298-RemovePATests.

Aug 27 2018, 9:57 AM · MITK (2018-04)
groehl raised the priority of T25298: Remove not working Photoacoustic tests from Wishlist to Normal.
Aug 27 2018, 9:53 AM · MITK (2018-04)
groehl triaged T25298: Remove not working Photoacoustic tests as Wishlist priority.
Aug 27 2018, 9:53 AM · MITK (2018-04)

Aug 24 2018

neher renamed T24705: [MITK Diffusion] MITK Diffusion crashes on close from MITK Diffusion crashes on close to [MITK Diffusion] MITK Diffusion crashes on close.
Aug 24 2018, 2:31 PM · MITK (2018-04)
goyette added a comment to T25285: Ellipsoid crash.

Yes, thank you!

Aug 24 2018, 2:19 PM · MITK (2018-04)
floca added a comment to T23343: Dicom editor can not load dicom segmentation objects.

It's not clear to me if this mergable as-is or not?

Aug 24 2018, 11:07 AM · MICO (Demo MICCAI 2018), MITK (2018-04)
kislinsk added a parent task for T23343: Dicom editor can not load dicom segmentation objects: T25193: Enable DCMQI in ReleaseConfiguration.
Aug 24 2018, 10:57 AM · MICO (Demo MICCAI 2018), MITK (2018-04)
kislinsk added a subtask for T25193: Enable DCMQI in ReleaseConfiguration: T23343: Dicom editor can not load dicom segmentation objects.
Aug 24 2018, 10:57 AM · MITK (2018-04)
kislinsk added a comment to T25193: Enable DCMQI in ReleaseConfiguration.

I guess this also implies that T23343: Dicom editor can not load dicom segmentation objects gets resolved?

Aug 24 2018, 10:57 AM · MITK (2018-04)
kislinsk added a comment to T23343: Dicom editor can not load dicom segmentation objects.

It's not clear to me if this mergable as-is or not?

Aug 24 2018, 10:56 AM · MICO (Demo MICCAI 2018), MITK (2018-04)
kislinsk placed T24552: Write migration guide up for grabs.
Aug 24 2018, 10:49 AM · MITK (2018-04)
kislinsk placed T25186: Set version information up for grabs.
Aug 24 2018, 10:47 AM · MITK (2018-04)
kislinsk renamed T24842: License information for icons from License information for FontAwsome icons to License information for icons.
Aug 24 2018, 10:40 AM · MITK (2018-04)
kislinsk closed T24842: License information for icons as Resolved.

Thank you, good work!

Aug 24 2018, 10:40 AM · MITK (2018-04)
kislinsk closed T25228: MatchPoint algorithms not found on macOS as Resolved.
Aug 24 2018, 9:56 AM · MITK (2018-04)
kislinsk closed T25228: MatchPoint algorithms not found on macOS, a subtask of T25191: v2018.04-beta, as Resolved.
Aug 24 2018, 9:56 AM · MITK (2018-04)
floca added a comment to T25228: MatchPoint algorithms not found on macOS.

Sure. Thank you!

Aug 24 2018, 9:55 AM · MITK (2018-04)
kislinsk added a comment to T25228: MatchPoint algorithms not found on macOS.

Pushed new branch T25228-ResolveMatchPointAlgorithmDependencies.

Aug 24 2018, 9:54 AM · MITK (2018-04)
kislinsk claimed T25228: MatchPoint algorithms not found on macOS.

@floca Sorry, but let me grab this task for now as I am currently testing if my assumption above works. :-)

Aug 24 2018, 9:40 AM · MITK (2018-04)
kislinsk updated subscribers of T25285: Ellipsoid crash.
Aug 24 2018, 12:09 AM · MITK (2018-04)
kislinsk closed T25285: Ellipsoid crash as Resolved.

Should be fixed in the beta branch now. I made a commit in your name (rMITK4fb32d1ab856: Fix wrong deletion), hope that's okay for you?

Aug 24 2018, 12:06 AM · MITK (2018-04)
kislinsk added a comment to T25285: Ellipsoid crash.

Pushed new branch T25285-EllipsoidCrash.

Aug 24 2018, 12:04 AM · MITK (2018-04)

Aug 23 2018

kislinsk triaged T25285: Ellipsoid crash as Normal priority.

The difference between Ellipsoid and the other classes is the usage of a vtkSmartPointer in the former case instead of a raw pointer. Unfortunately, the one who changed the raw pointer to a smart pointer forgot to remove the call to Delete(). This makes a difference as SetVtkPolyData() calls TakeReference() to take ownership of the input and then manually calls Register() to increase the reference count to 2. Then, Delete() reduces it to 1 and when the sphere smartpointer goes out of scope the reference count is 0 and the object is deleted but to work as intended it should be 1 after the constructor.

Aug 23 2018, 11:56 PM · MITK (2018-04)
kislinsk added a comment to T25228: MatchPoint algorithms not found on macOS.

We made some findings today that indicate missing dependencies of the mdra libs in the installer. Adding the ep/src/MatchPoint-build/bin folder to the search path works. So basically it is not enough to have the install rules in mitkInstallRules.cmake. Instead, the mdra-files should be handled like other plugins and passed to fixup_bundle as dynamic runtime libs.

Aug 23 2018, 10:22 PM · MITK (2018-04)
floca claimed T25228: MatchPoint algorithms not found on macOS.
Aug 23 2018, 4:28 PM · MITK (2018-04)
metzger reassigned T23343: Dicom editor can not load dicom segmentation objects from metzger to kislinsk.
Aug 23 2018, 4:18 PM · MICO (Demo MICCAI 2018), MITK (2018-04)

Aug 22 2018

eisenman added a comment to T25267: MatchPoint build errors.

I already downgraded to 15.7.6, sorry! But I still have the error prompt in case that helps. Maybe @aguilera still has 15.8.0 installed and can test the proposed solution?

Aug 22 2018, 1:38 PM · MITK (2018-04)
kislinsk added a comment to T25267: MatchPoint build errors.

You can also try to disable global optimizations with a compiler switch and see if if helps (for example, CMAKE_CXX_FLAGS are propagated also to external dependencies).

Aug 22 2018, 12:30 AM · MITK (2018-04)
kislinsk added a comment to T25267: MatchPoint build errors.

Yes, ITK and MatchPoint are affected. Both make heavy use of templates which seems to break the new compiler. Did you send an error report? If it wasn't offered, it can be set with a compile option: https://docs.microsoft.com/en-us/cpp/build/reference/errorreport-report-internal-compiler-errors

Aug 22 2018, 12:27 AM · MITK (2018-04)

Aug 20 2018

eisenman updated subscribers of T25267: MatchPoint build errors.
Aug 20 2018, 2:19 PM · MITK (2018-04)
eisenman added a comment to T25267: MatchPoint build errors.

I can confirm an internal compiler error when building with Visual Studio 15.8.0 and 15.8.1 (I updated today). Python, Numpy, and SimpleITK were not enabled in my case.

Aug 20 2018, 2:17 PM · MITK (2018-04)
kislinsk added a comment to T25267: MatchPoint build errors.

Oops, he confused ITK with SimpleITK. The latter still leads to an internal compiler error. I recommend to downgrade to 15.7.x or to change the build configuration to custom and switch off Python, Numpy, and SimpleITK.

Aug 20 2018, 1:00 PM · MITK (2018-04)
neher closed T24472: Add python based views as Resolved.
Aug 20 2018, 12:52 PM · MITK (2018-04)
kislinsk updated subscribers of T25269: Make MITK compatible to future Visual Studio versions.
Aug 20 2018, 12:28 PM · MITK (2018-04)
kislinsk closed T25269: Make MITK compatible to future Visual Studio versions as Resolved.
Aug 20 2018, 12:24 PM · MITK (2018-04)
kislinsk added a comment to T25269: Make MITK compatible to future Visual Studio versions.

Pushed new branch T25269-VisualStudioVersions.

Aug 20 2018, 12:22 PM · MITK (2018-04)
kislinsk triaged T25269: Make MITK compatible to future Visual Studio versions as High priority.
Aug 20 2018, 11:56 AM · MITK (2018-04)
kislinsk changed the status of T25267: MatchPoint build errors from Wontfix to Invalid.
Aug 20 2018, 11:52 AM · MITK (2018-04)
kislinsk closed T25267: MatchPoint build errors as Wontfix.

A colleague just told me that there was a second update this week that fixed the internal compiler error. However, we have a CMake script that assembles some variables related to the Visual Studio version, which needs to be updated rather often. 15.8 is missing. I will have a look at this file and try to come up with something generic, future-proof.

Aug 20 2018, 11:51 AM · MITK (2018-04)
kislinsk triaged T25267: MatchPoint build errors as Low priority.

Internal compiler errors are usually really errors/bugs in the compiler. Didn't built with 15.8 so far but I'll update my compiler this week.

Aug 20 2018, 10:57 AM · MITK (2018-04)

Aug 16 2018

hentsch placed T24842: License information for icons up for grabs.
Aug 16 2018, 5:04 PM · MITK (2018-04)
hentsch added a comment to T24842: License information for icons.

Pushed new branch T24842-lincenseInformationIcons.

Aug 16 2018, 5:01 PM · MITK (2018-04)
hentsch claimed T24842: License information for icons.
Aug 16 2018, 11:28 AM · MITK (2018-04)
hentsch added a comment to T24993: DICOM Plugin doesn't build.

On Windows, the dicom plugin builds and also finds storescp.

Aug 16 2018, 11:25 AM · MITK (2018-04)

Aug 15 2018

hentsch closed T25238: Console invisible on two monitors as Resolved.
Aug 15 2018, 2:59 PM · MITK (2018-04)

Aug 13 2018

kislinsk added a comment to T24333: Noteworthy new features since MITK 2016.11.

@seitela noticed, that with Qt 5.11.1 we also have MSVC 2017 as minimum required compiler as QtWebEngine in Qt 5.11 is only available for MSVC 2017.

Aug 13 2018, 1:36 PM · MITK (2018-04)

Aug 10 2018

neher closed T24502: Update user manual of diffusion views as Resolved.
Aug 10 2018, 2:22 PM · MITK (2018-04)
neher added a comment to T24502: Update user manual of diffusion views.

Pushed new branch T24502-UserManuals.

Aug 10 2018, 2:21 PM · MITK (2018-04)
hentsch added a comment to T25238: Console invisible on two monitors.

Pushed new branch T25238-consoleInvisibleTwoMonitors.

Aug 10 2018, 1:38 PM · MITK (2018-04)
kislinsk closed T25242: Crash in ctkPluginStorage::close() when closing MitkWorkbench as Resolved.

Did a commit on the beta branch, using a commit of my CTK fork due to time pressure. Should point to an official CTK commit as soon as merged by them.

Aug 10 2018, 1:18 PM · MITK (2018-04)
kislinsk closed T25242: Crash in ctkPluginStorage::close() when closing MitkWorkbench, a subtask of T25191: v2018.04-beta, as Resolved.
Aug 10 2018, 1:18 PM · MITK (2018-04)

Aug 9 2018

kislinsk added a comment to T25242: Crash in ctkPluginStorage::close() when closing MitkWorkbench.

I solved this today and will create a pull request for CTK.

Aug 9 2018, 8:24 PM · MITK (2018-04)
hentsch claimed T25238: Console invisible on two monitors.
Aug 9 2018, 11:40 AM · MITK (2018-04)
kislinsk updated the task description for T25242: Crash in ctkPluginStorage::close() when closing MitkWorkbench.
Aug 9 2018, 10:13 AM · MITK (2018-04)
kislinsk triaged T25242: Crash in ctkPluginStorage::close() when closing MitkWorkbench as High priority.
Aug 9 2018, 10:12 AM · MITK (2018-04)
kislinsk added a comment to T25191: v2018.04-beta.
  • Linux installers do not work with Qt 5.10.1. QtWebEngineProcess isn't found. It's a bug in Qt 5.10 and fixed in Qt 5.11.1. However, we have a crash with Qt 5.11.1 when closing the workbench related to ctkPluginStorageSQL.
Aug 9 2018, 10:09 AM · MITK (2018-04)

Aug 8 2018

hentsch added a comment to T25238: Console invisible on two monitors.

See T24376 about the intial code

Aug 8 2018, 3:39 PM · MITK (2018-04)