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Jan 25 2021

floca committed rMITKa720f2bed6e1: BREAKING mitk::Point conversion constructor (authored by floca).
BREAKING mitk::Point conversion constructor
Jan 25 2021, 4:02 PM
floca committed rMITK6513178ca95f: Removed obsolete empty function (authored by floca).
Removed obsolete empty function
Jan 25 2021, 4:02 PM
floca committed rMITKbc6114b56830: BREAKING ContourModel::AddVertex and refactored ContourElement and fixed memory… (authored by floca).
BREAKING ContourModel::AddVertex and refactored ContourElement and fixed memory…
Jan 25 2021, 4:02 PM
floca closed T28148: Fix/Refactor ContourElement as Resolved by committing rMITKbc6114b56830: BREAKING ContourModel::AddVertex and refactored ContourElement and fixed memory….
Jan 25 2021, 4:02 PM · MITK (v2021.02)
floca committed rMITKdbd00321b51a: BREAKING ContourModel (see below) + Fixed review remarks. (authored by floca).
BREAKING ContourModel (see below) + Fixed review remarks.
Jan 25 2021, 4:02 PM
floca committed rMITK8e28cfe9a419: Fixed gcc/clang errors (authored by floca).
Fixed gcc/clang errors
Jan 25 2021, 4:02 PM
floca committed rMITK7b29121c3ed2: Fixed glitch that would leed to a missed update if the tool (authored by floca).
Fixed glitch that would leed to a missed update if the tool
Jan 25 2021, 4:02 PM
floca committed rMITK1a1c5b9183f9: Fixed gcc/clang compile errors (authored by floca).
Fixed gcc/clang compile errors
Jan 25 2021, 4:02 PM
floca committed rMITK6a717a69cc9f: Refactored RegionGrowingTool, now uses new FeedbackContourTool functionality (authored by floca).
Refactored RegionGrowingTool, now uses new FeedbackContourTool functionality
Jan 25 2021, 4:02 PM
floca committed rMITK3ff6f52dbcc6: Fixed visibility of livewire contour in last time step of working images with (authored by floca).
Fixed visibility of livewire contour in last time step of working images with
Jan 25 2021, 4:02 PM
floca committed rMITK3055d3d21a2a: Refactored SetRegionTool (authored by floca).
Refactored SetRegionTool
Jan 25 2021, 4:02 PM
floca committed rMITKe9274d346bcb: Refactored CorrectorTool, now uses new FeedbackContourTool functionality (authored by floca).
Refactored CorrectorTool, now uses new FeedbackContourTool functionality
Jan 25 2021, 4:02 PM
floca committed rMITK9dad51c932c6: Refactored and cleaned up ContourTool (authored by floca).
Refactored and cleaned up ContourTool
Jan 25 2021, 4:02 PM
floca committed rMITKdb75f8bb2819: Refactored/cleaned PaintbrushTool to use new FeedbackContourTool (authored by floca).
Refactored/cleaned PaintbrushTool to use new FeedbackContourTool
Jan 25 2021, 4:02 PM
floca committed rMITKe36abcd4bc6e: BREAKING mitk::FeedbackContourTool (authored by floca).
BREAKING mitk::FeedbackContourTool
Jan 25 2021, 4:02 PM
floca committed rMITKf3ae7e5f8564: fixed time step management of mitk::SegmentationInteractor (authored by floca).
fixed time step management of mitk::SegmentationInteractor
Jan 25 2021, 4:02 PM
floca committed rMITKf30516d6fc0e: BREAKING WriteSliceToVolume removed unused 5th parameter (time step). (authored by floca).
BREAKING WriteSliceToVolume removed unused 5th parameter (time step).
Jan 25 2021, 4:02 PM
floca committed rMITK2cdf951077d5: Refactored QmitkWatershedToolGUI to use QmitkAutoMLSegmentationToolGUIBase (authored by floca).
Refactored QmitkWatershedToolGUI to use QmitkAutoMLSegmentationToolGUIBase
Jan 25 2021, 4:02 PM
floca committed rMITK4f985a9b05f5: Fixed error in ContourModel::Clear(int) (authored by floca).
Fixed error in ContourModel::Clear(int)
Jan 25 2021, 4:02 PM
floca committed rMITK41d2ec201655: Improve constness of contour classes (authored by floca).
Improve constness of contour classes
Jan 25 2021, 4:02 PM
floca committed rMITK0a3983610f13: Refactored QmitkOtsuTool3DGUI to use QmitkAutoMLSegmentationToolGUIBase (authored by floca).
Refactored QmitkOtsuTool3DGUI to use QmitkAutoMLSegmentationToolGUIBase
Jan 25 2021, 4:01 PM
floca committed rMITK2ff07928196d: Finished refactoring of FastMarchingTool for 2D and 3D to use same code base (authored by floca).
Finished refactoring of FastMarchingTool for 2D and 3D to use same code base
Jan 25 2021, 4:01 PM
floca committed rMITK047173d4e8a7: Start to remove redundancy in tool UIs (authored by floca).
Start to remove redundancy in tool UIs
Jan 25 2021, 4:01 PM
floca committed rMITK1169ba49d61c: Reworked GUI of 2D/3D FastMarchingTool to reduce redundant code and use… (authored by floca).
Reworked GUI of 2D/3D FastMarchingTool to reduce redundant code and use…
Jan 25 2021, 4:01 PM
floca committed rMITK8476cce81578: BREAKING behavior LiveWireTool2D (authored by floca).
BREAKING behavior LiveWireTool2D
Jan 25 2021, 4:01 PM
floca committed rMITKd8d3e82df1cc: Improve constness (authored by floca).
Improve constness
Jan 25 2021, 4:01 PM
floca closed T27800: [Segmentation] Live Wire crashes with 4D image and static segmentation, a subtask of T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation, as Resolved.
Jan 25 2021, 4:01 PM · MITK (v2021.10), Missing Info, Restricted Project
floca closed T27800: [Segmentation] Live Wire crashes with 4D image and static segmentation as Resolved by committing rMITK8476cce81578: BREAKING behavior LiveWireTool2D.
Jan 25 2021, 4:01 PM · MITK (v2021.02)
floca closed T28128: ContourModels are not correctly rendered on time steps > 0 as Resolved by committing rMITKcc7d061bf06a: Fixed rendering of contours on time steps > 0..
Jan 25 2021, 4:01 PM · MITK
floca closed T28129: Contour interactor do not handle time steps > 0 correctly and do not support time geometries correctly as Resolved by committing rMITK12899a001e4a: Corrected support of time geometries in contour interactors..
Jan 25 2021, 4:01 PM · MITK
floca committed rMITK12899a001e4a: Corrected support of time geometries in contour interactors. (authored by floca).
Corrected support of time geometries in contour interactors.
Jan 25 2021, 4:01 PM
floca committed rMITK14a12898a884: Improved SegTool2D interface (authored by floca).
Improved SegTool2D interface
Jan 25 2021, 4:01 PM
floca committed rMITKcc7d061bf06a: Fixed rendering of contours on time steps > 0. (authored by floca).
Fixed rendering of contours on time steps > 0.
Jan 25 2021, 4:01 PM
floca committed rMITK10095d92849f: Added time point change support to SegTool2D (authored by floca).
Added time point change support to SegTool2D
Jan 25 2021, 4:01 PM
floca committed rMITKb933b90720d5: improved parameter naming (authored by floca).
improved parameter naming
Jan 25 2021, 4:01 PM
floca committed rMITKc7f54dfd1df1: BREAKING CHANGES!!! (authored by floca).
BREAKING CHANGES!!!
Jan 25 2021, 4:01 PM
floca committed rMITK347f8da13e5b: Improved const support of LabelSetImage (authored by floca).
Improved const support of LabelSetImage
Jan 25 2021, 4:01 PM
floca committed rMITKb8e2d908dcbc: BREAKING (authored by floca).
BREAKING
Jan 25 2021, 4:01 PM
floca committed rMITK060d92290023: Corrected use of TimeStepType (authored by floca).
Corrected use of TimeStepType
Jan 25 2021, 4:01 PM
floca committed rMITK2667cf689439: Improved constness of ContourModelUtils (authored by floca).
Improved constness of ContourModelUtils
Jan 25 2021, 4:01 PM
floca committed rMITK64b3ff3b8a7a: Refactored TimeStepType of DiffSliceOperation (authored by floca).
Refactored TimeStepType of DiffSliceOperation
Jan 25 2021, 4:01 PM
floca committed rMITKe84fe1cf7688: Added first draft for 2D/3D FastMarchingBaseTool (authored by floca).
Added first draft for 2D/3D FastMarchingBaseTool
Jan 25 2021, 4:01 PM
floca committed rMITKa5101d9eda9e: GetAffectedImageSliceAs2DImage is now static and public (authored by floca).
GetAffectedImageSliceAs2DImage is now static and public
Jan 25 2021, 4:01 PM
floca committed rMITKbcca91460daa: Corrected comments, removed undefined constructor (authored by floca).
Corrected comments, removed undefined constructor
Jan 25 2021, 4:01 PM
p212r moved T28196: [Docs] Update Dev-Guide for 0.1.1-dev from Backlog to In Progress on the Kaapana (internal) board.
Jan 25 2021, 12:58 PM · Kaapana (internal)
p212r triaged T28196: [Docs] Update Dev-Guide for 0.1.1-dev as Low priority.
Jan 25 2021, 12:57 PM · Kaapana (internal)
kislinsk closed T28195: Update macOS support as Resolved.
Jan 25 2021, 12:03 PM · MITK (v2021.02)
kislinsk added a comment to T28195: Update macOS support.

Deleted branch from rMITK MITK: bugfix/T28195-UpdateMacOSSupport.

Jan 25 2021, 12:02 PM · MITK (v2021.02)
kislinsk committed rMITK5b73a812b18a: Update macOS support (authored by kislinsk).
Update macOS support
Jan 25 2021, 12:02 PM
wiesenfa moved T28194: drop restriction at least 3 algorithms required for bootstrapping from In Progress to Done on the challengeR board.
Jan 25 2021, 12:02 PM · challengeR
wiesenfa moved T28193: bug in stabilityByAlgorithm.bootstrap.list from In Progress to Done on the challengeR board.
Jan 25 2021, 12:02 PM · challengeR
kislinsk committed rMITK0de7a8f8c09b: Merge branch 'bugfix/T28195-UpdateMacOSSupport' into develop (authored by kislinsk).
Merge branch 'bugfix/T28195-UpdateMacOSSupport' into develop
Jan 25 2021, 12:02 PM
wiesenfa committed rCHALLENGERf89ab5d8b1e1: revert (authored by wiesenfa).
revert
Jan 25 2021, 12:01 PM
wiesenfa committed rCHALLENGERfb258fbf1b25: allow only 2 algorithms in bootstrapping (authored by wiesenfa).
allow only 2 algorithms in bootstrapping
Jan 25 2021, 12:01 PM
wiesenfa committed rCHALLENGER4430defcf69d: T28194 allow 2 algorithms for bootstrapping (authored by wiesenfa).
T28194 allow 2 algorithms for bootstrapping
Jan 25 2021, 12:01 PM
wiesenfa committed rCHALLENGER83bcd8eeb603: fix facet names (authored by wiesenfa).
fix facet names
Jan 25 2021, 12:01 PM
kislinsk added a comment to T28195: Update macOS support.

Pushed new branch to rMITK MITK: bugfix/T28195-UpdateMacOSSupport.

Jan 25 2021, 11:59 AM · MITK (v2021.02)
kislinsk triaged T28195: Update macOS support as Normal priority.
Jan 25 2021, 11:57 AM · MITK (v2021.02)
wiesenfa moved T28194: drop restriction at least 3 algorithms required for bootstrapping from Backlog to In Progress on the challengeR board.
Jan 25 2021, 11:55 AM · challengeR
wiesenfa created T28194: drop restriction at least 3 algorithms required for bootstrapping.
Jan 25 2021, 11:55 AM · challengeR
wiesenfa moved T28193: bug in stabilityByAlgorithm.bootstrap.list from Backlog to In Progress on the challengeR board.
Jan 25 2021, 11:53 AM · challengeR
wiesenfa created T28193: bug in stabilityByAlgorithm.bootstrap.list.
Jan 25 2021, 11:53 AM · challengeR
kislinsk edited the content of 2021 Week 04 (Very Late January).
Jan 25 2021, 7:31 AM
kislinsk resigned from rMITKbf9d6a1ff701: Use --binary option.
Jan 25 2021, 7:14 AM

Jan 24 2021

kislinsk edited the content of Step 0 - Create a Phabricator account.
Jan 24 2021, 4:07 PM · Onboarding
kislinsk updated subscribers of Phriction.
Jan 24 2021, 4:04 PM

Jan 23 2021

kalali updated the task description for T28191: Refactor and extend LevelWindow unit tests.
Jan 23 2021, 11:31 PM · Auto-closed, MITK
kislinsk edited the content of 2021 Week 04 (Very Late January).
Jan 23 2021, 9:01 PM
kislinsk added a comment to T27992: Release of MITK CLIs.

Deleted branch from rMITK MITK: feature/T27992-CmdLineAppsInWorkbenchReleaseConfig.

Jan 23 2021, 8:54 PM · MITK (v2021.02), Request for Discussion
kislinsk committed rMITK7a9d7e5292e0: Remove experimental RectifyImage command-line app (authored by kislinsk).
Remove experimental RectifyImage command-line app
Jan 23 2021, 8:53 PM
kislinsk committed rMITKf1e5deed88b7: Add build configuration for MITK Phenotyping (authored by kislinsk).
Add build configuration for MITK Phenotyping
Jan 23 2021, 8:53 PM
kislinsk committed rMITKe53aa42253f6: Include CoreCmdApps in WorkbenchRelease configuration (authored by kislinsk).
Include CoreCmdApps in WorkbenchRelease configuration
Jan 23 2021, 8:53 PM
kislinsk committed rMITK74b4982fe7a7: Include CoreCmdApps in WorkbenchRelease configuration and add… (authored by kislinsk).
Include CoreCmdApps in WorkbenchRelease configuration and add…
Jan 23 2021, 8:53 PM
kislinsk closed T27992: Release of MITK CLIs as Resolved by committing rMITK74b4982fe7a7: Include CoreCmdApps in WorkbenchRelease configuration and add….
Jan 23 2021, 8:53 PM · MITK (v2021.02), Request for Discussion
floca added a comment to T27498: [Selection widgets] Define default for auto selection / listening mechanism.

@kalali We postpone it as it is not trivial (see T28192; generated a dedicated task for that) but also not critical. Thanks for pointing it out again. I think you could close this task here.

Jan 23 2021, 2:58 PM · Restricted Project, MITK (v2021.02)
floca triaged T28192: [Registration] Auto selection (and listening) in MatchPoint views as Normal priority.
Jan 23 2021, 2:56 PM · Moved to git.dkfz.de, MITK
kislinsk added a revision to T27992: Release of MITK CLIs: Unknown Object (Differential Revision).
Jan 23 2021, 8:51 AM · MITK (v2021.02), Request for Discussion
kislinsk added a comment to T27992: Release of MITK CLIs.

Pushed new branch to rMITK MITK: feature/T27992-CmdLineAppsInWorkbenchReleaseConfig.

Jan 23 2021, 8:47 AM · MITK (v2021.02), Request for Discussion
kislinsk claimed T27992: Release of MITK CLIs.

I asked in the general Slack channel for command-line apps in use. It boils down to the file converters in CoreCmdApps. Other mentions are too specific for the WorkbenchRelease configuration and are related to the Classification module. We should consider adding a phenotyping build configuration, though.

Jan 23 2021, 8:29 AM · MITK (v2021.02), Request for Discussion
kislinsk edited the content of 2021 Week 04 (Very Late January).
Jan 23 2021, 8:16 AM
kislinsk edited the content of 2021 Week 04 (Very Late January).
Jan 23 2021, 8:15 AM
kislinsk edited the content of 2021 Week 04 (Very Late January).
Jan 23 2021, 8:03 AM

Jan 22 2021

kislinsk edited the content of 2021 Week 04 (Very Late January).
Jan 22 2021, 9:49 PM
kislinsk created an object: 2021 Week 04 (Very Late January).
Jan 22 2021, 8:56 PM
eisenman added a comment to T28100: [dash] Decide on a file management strategy.

Files that cannot be read by a CSV reader should be deleted immediately to avoid that potentially malicious resources are hosted on this public server. A simple check for file extension is not enough. Arbitrary files can be uploaded by just adding the extension *.csv.

Jan 22 2021, 7:45 PM · webChallengeR
kalali triaged T28191: Refactor and extend LevelWindow unit tests as High priority.
Jan 22 2021, 5:26 PM · Auto-closed, MITK
kalali added a comment to T26988: [Checklist] LevelWindow checklist does not provide explicit expected results for sufficient verification .

I looked through the checklist and updated it to be in line with the already updated checklists (see parent task T28108).
I copied the modified document to E130-Daten\Release\Checklisten\MITK Workbench Release.

Jan 22 2021, 5:21 PM · Moved to git.dkfz.de, MITK (v2024.12)
kalali reopened T28113: [Segmentation] LiveWire tool confirms segmentation upon tool or label change as "Open".

The issue has already been reported here T26754 and here T22395, so I will merge the task here.

Jan 22 2021, 3:43 PM · Request for Discussion, MITK (v2021.10)
kalali reopened T28113: [Segmentation] LiveWire tool confirms segmentation upon tool or label change, a subtask of T28176: [Segmentation] Inspection of module and plugin, as Open.
Jan 22 2021, 3:43 PM · Moved to git.dkfz.de, MITK (v2024.12)
kalali merged T22395: Live wire tool deactivate leads to confirm segmentation into T28113: [Segmentation] LiveWire tool confirms segmentation upon tool or label change.
Jan 22 2021, 3:43 PM · Request for Discussion, MITK (v2021.10)
kalali merged task T22395: Live wire tool deactivate leads to confirm segmentation into T28113: [Segmentation] LiveWire tool confirms segmentation upon tool or label change.
Jan 22 2021, 3:43 PM · MITK, Restricted Project
kalali merged task T28113: [Segmentation] LiveWire tool confirms segmentation upon tool or label change into T22395: Live wire tool deactivate leads to confirm segmentation.
Jan 22 2021, 3:42 PM · Request for Discussion, MITK (v2021.10)
kalali merged T28113: [Segmentation] LiveWire tool confirms segmentation upon tool or label change into T22395: Live wire tool deactivate leads to confirm segmentation.
Jan 22 2021, 3:42 PM · MITK, Restricted Project
kalali moved T26988: [Checklist] LevelWindow checklist does not provide explicit expected results for sufficient verification from Backlog to Test/Checklists on the MITK (v2021.02) board.
Jan 22 2021, 12:46 PM · Moved to git.dkfz.de, MITK (v2024.12)
kalali moved T26988: [Checklist] LevelWindow checklist does not provide explicit expected results for sufficient verification from Restricted Project Column to Restricted Project Column on the Restricted Project board.
Jan 22 2021, 12:45 PM · Moved to git.dkfz.de, MITK (v2024.12)
kalali added a subtask for T28108: [Release Checklists] Prepare release checklists: T26988: [Checklist] LevelWindow checklist does not provide explicit expected results for sufficient verification .
Jan 22 2021, 12:44 PM · MITK
kalali added a parent task for T26988: [Checklist] LevelWindow checklist does not provide explicit expected results for sufficient verification : T28108: [Release Checklists] Prepare release checklists.
Jan 22 2021, 12:44 PM · Moved to git.dkfz.de, MITK (v2024.12)
kalali claimed T26988: [Checklist] LevelWindow checklist does not provide explicit expected results for sufficient verification .
Jan 22 2021, 12:43 PM · Moved to git.dkfz.de, MITK (v2024.12)

Jan 21 2021

floca awarded T27460: Badge support for our CDash/CI infrastructure a Like token.
Jan 21 2021, 9:49 PM · CI, MITK
kislinsk closed T27460: Badge support for our CDash/CI infrastructure as Resolved.

Screenshot from the MITK Github page:

Jan 21 2021, 9:46 PM · CI, MITK
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