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Today

kahl added a comment to T28464: [Segmentation] New Add/Remove tool.

Pushed new branch to rMITK MITK: feature/T28464-new-add-tool.

Wed, Oct 20, 9:36 AM · Cleared, MITK (v2021.10)
kislinsk moved T28756: [Segmentation] 3-d picking tool crashes with dynamic segmentations from Backlog to Cycle on the MITK (v2021.10) board.
Wed, Oct 20, 7:48 AM · MITK (v2021.10)
kislinsk triaged T28756: [Segmentation] 3-d picking tool crashes with dynamic segmentations as Unbreak Now! priority.
Wed, Oct 20, 7:48 AM · MITK (v2021.10)

Mon, Oct 18

s349i added a comment to T28176: [Segmentation] Inspection of module and plugin.

Testing if both Segmentation Utilities and Multilabel Segmentation Utilities have the same functionality:

  • For 3d data, a surface (or surfaces, depending on the case) was created by doing a 3d-interpolation of the masks in different 2d views. Data Used: MITK-Data/brain.nrrd.
Mon, Oct 18, 4:00 PM · MITK (v2021.10)
kalali edited projects for T26492: [mxn multi widget] Send active render window, added: MITK (v2021.10), Breaking Change; removed MITK.
Mon, Oct 18, 11:04 AM · Breaking Change, MITK (v2021.10)
kalali edited projects for T26486: PACS mouse mode does not allow scrolling with mouse wheel, added: MITK (v2021.10), Breaking Change; removed MITK.
Mon, Oct 18, 10:17 AM · Breaking Change, MITK (v2021.10)
kislinsk closed T28749: libxdamage can be a runtime dependence on Ubuntu 20.04 as Resolved.
Mon, Oct 18, 9:40 AM · MITK (v2021.10)
kislinsk added a comment to T28749: libxdamage can be a runtime dependence on Ubuntu 20.04.

Deleted branch from rMITK MITK: bugfix/T28749-libxdamage.

Mon, Oct 18, 9:40 AM · MITK (v2021.10)
kislinsk added a comment to T28749: libxdamage can be a runtime dependence on Ubuntu 20.04.

Pushed new branch to rMITK MITK: bugfix/T28749-libxdamage.

Mon, Oct 18, 9:39 AM · MITK (v2021.10)
kislinsk triaged T28749: libxdamage can be a runtime dependence on Ubuntu 20.04 as Normal priority.
Mon, Oct 18, 9:35 AM · MITK (v2021.10)
floca added a comment to T28320: [Segmentation] Region growing does not work if seed point is already inside a segmentation.

@floca, should we also add this for the upcoming release?

Mon, Oct 18, 9:24 AM · Missing Info, MITK (v2021.10), Request for Discussion
kalali closed T27713: [Segmentation] Disable "New" button when no image is selected, a subtask of T28176: [Segmentation] Inspection of module and plugin, as Resolved.
Mon, Oct 18, 9:01 AM · MITK (v2021.10)
kalali closed T27713: [Segmentation] Disable "New" button when no image is selected as Resolved.

Has been fixed with the mentioned diff / task.

Mon, Oct 18, 9:01 AM · MITK (v2021.10), Request for Discussion
kalali moved T28320: [Segmentation] Region growing does not work if seed point is already inside a segmentation from Segmentation to Cycle on the MITK (v2021.10) board.

@floca, should we also add this for the upcoming release?

Mon, Oct 18, 8:59 AM · Missing Info, MITK (v2021.10), Request for Discussion

Fri, Oct 15

kislinsk claimed T28736: Preferences for segmentation '2D display' are not properly utilized.

I already implemented something but it is not yet finished.

Fri, Oct 15, 1:01 PM · MITK (v2021.10)
kalali closed T28667: [Segmentation] Generalize overwriting of interaction configs when using tools, a subtask of T28629: [ImageCropper] PACS mode is active while bounding box is drawn, as Resolved.
Fri, Oct 15, 11:21 AM · MITK (v2021.10)
kalali closed T28667: [Segmentation] Generalize overwriting of interaction configs when using tools as Resolved.
Fri, Oct 15, 11:21 AM · MITK (v2021.10)
kalali closed T28667: [Segmentation] Generalize overwriting of interaction configs when using tools, a subtask of T26485: [Segmentation] PACS mode is active while segmentation is drawn, as Resolved.
Fri, Oct 15, 11:21 AM · MITK (v2021.10)
kislinsk closed T28732: [Segmentation] 3d region growing does not work with low seed point values as Resolved by committing rMITK8770978862e2: Use semantically correct minimum for value range in region growing preview.
Fri, Oct 15, 10:11 AM · MITK (v2021.10)
floca added a comment to T28732: [Segmentation] 3d region growing does not work with low seed point values.

Good catch! Thanks

Fri, Oct 15, 9:30 AM · MITK (v2021.10)
kalali added a revision to T28667: [Segmentation] Generalize overwriting of interaction configs when using tools: Restricted Differential Revision.
Fri, Oct 15, 9:17 AM · MITK (v2021.10)
kalali moved T28667: [Segmentation] Generalize overwriting of interaction configs when using tools from Backlog to Cycle on the MITK (v2021.10) board.
Fri, Oct 15, 9:16 AM · MITK (v2021.10)
kalali raised the priority of T28667: [Segmentation] Generalize overwriting of interaction configs when using tools from Normal to Unbreak Now!.
Fri, Oct 15, 9:14 AM · MITK (v2021.10)
kalali reopened T28667: [Segmentation] Generalize overwriting of interaction configs when using tools, a subtask of T26485: [Segmentation] PACS mode is active while segmentation is drawn, as Open.
Fri, Oct 15, 9:14 AM · MITK (v2021.10)
kalali reopened T28667: [Segmentation] Generalize overwriting of interaction configs when using tools as "Open".
Fri, Oct 15, 9:14 AM · MITK (v2021.10)
kalali reopened T28667: [Segmentation] Generalize overwriting of interaction configs when using tools, a subtask of T28629: [ImageCropper] PACS mode is active while bounding box is drawn, as Open.
Fri, Oct 15, 9:14 AM · MITK (v2021.10)
kislinsk added a revision to T28732: [Segmentation] 3d region growing does not work with low seed point values: Restricted Differential Revision.
Fri, Oct 15, 7:01 AM · MITK (v2021.10)
kislinsk added a comment to T28732: [Segmentation] 3d region growing does not work with low seed point values.

BTW I recommend to test always with the latest snapshot installer instead of the last release.

Fri, Oct 15, 6:53 AM · MITK (v2021.10)
kislinsk added a comment to T28732: [Segmentation] 3d region growing does not work with low seed point values.

Found the bug. The lower threshold for the region growing preview is set to itk::NumericTraits<TPixel>::min() when the region growing direction is downwards. However, itk::NumericTraits<TPixel>::min() is the wrong method as it has a different meaning for floating point values than the author obviously expected (compare to min() vs. lowest() in std::numeric_limits<>). The correct method is itk::NumericTraits<TPixel>::NonpositiveMin(), which works for all cases and is the right semantic minimum of a range of values.

Fri, Oct 15, 6:51 AM · MITK (v2021.10)

Thu, Oct 14

kalali added a comment to T28732: [Segmentation] 3d region growing does not work with low seed point values.

Is doesn't have to be in the installer - but it has to be in the final release, meaning: It will probably be a bug found by some manual checklist testing by some random people.

Thu, Oct 14, 9:27 PM · MITK (v2021.10)
kislinsk moved T28736: Preferences for segmentation '2D display' are not properly utilized from Backlog to Segmentation on the MITK (v2021.10) board.
Thu, Oct 14, 9:21 PM · MITK (v2021.10)
kislinsk triaged T28736: Preferences for segmentation '2D display' are not properly utilized as Normal priority.

Workaround: (Re)open the MultiLabel Segmentation view after you converted the segmentation to make it work.

Thu, Oct 14, 9:21 PM · MITK (v2021.10)
floca added a comment to T28732: [Segmentation] 3d region growing does not work with low seed point values.

We actually talked about the priority and I explicitly said to set it to "Unbreak Now" because it HAS to be fixed for the upcoming release. What are your thoughts?

Thu, Oct 14, 8:38 PM · MITK (v2021.10)
kislinsk closed T13958: Replace all *.pic and *.pic.gz files in MITK by *.nrrd, a subtask of T28737: Remove last remains of .pic support, as Resolved.
Thu, Oct 14, 4:40 PM · Breaking Change, MITK (v2021.10)
kislinsk closed T28737: Remove last remains of .pic support as Resolved by committing rMITK8b0f5727d844: Remove last remains of .pic support.
Thu, Oct 14, 4:39 PM · Breaking Change, MITK (v2021.10)
kislinsk closed T28740: Update CI build status badges in README on GitHub as Resolved.
Thu, Oct 14, 4:15 PM · MITK (v2021.10)
kislinsk added a comment to T28740: Update CI build status badges in README on GitHub.

Deleted branch from rMITK MITK: bugfix/T28740-CIBuildStatusBadges.

Thu, Oct 14, 4:15 PM · MITK (v2021.10)
kislinsk added a comment to T28740: Update CI build status badges in README on GitHub.

Pushed new branch to rMITK MITK: bugfix/T28740-CIBuildStatusBadges.

Thu, Oct 14, 4:14 PM · MITK (v2021.10)
kislinsk triaged T28740: Update CI build status badges in README on GitHub as Normal priority.
Thu, Oct 14, 4:13 PM · MITK (v2021.10)
kislinsk closed T28739: Update supported platforms in Tier 1 as Resolved.
Thu, Oct 14, 2:33 PM · MITK (v2021.10)
kislinsk added a comment to T28739: Update supported platforms in Tier 1.

Deleted branch from rMITK MITK: bugfix/T28739-UpdateSupportedTier1Platforms.

Thu, Oct 14, 2:32 PM · MITK (v2021.10)
kislinsk added a comment to T28739: Update supported platforms in Tier 1.

Pushed new branch to rMITK MITK: bugfix/T28739-UpdateSupportedTier1Platforms.

Thu, Oct 14, 2:31 PM · MITK (v2021.10)
kislinsk triaged T28739: Update supported platforms in Tier 1 as Normal priority.
Thu, Oct 14, 2:15 PM · MITK (v2021.10)
kislinsk added a revision to T28737: Remove last remains of .pic support: Restricted Differential Revision.
Thu, Oct 14, 1:49 PM · Breaking Change, MITK (v2021.10)
kislinsk added a project to T28737: Remove last remains of .pic support: Breaking Change.
Thu, Oct 14, 1:42 PM · Breaking Change, MITK (v2021.10)
kislinsk renamed T28737: Remove last remains of .pic support from Please enter a meaningful title to Remove last remains of .pic support.
Thu, Oct 14, 1:41 PM · Breaking Change, MITK (v2021.10)
kislinsk added a comment to T28737: Remove last remains of .pic support.

Pushed new branch to rMITK MITK: bugfix/T28737-RemovePicSupport.

Thu, Oct 14, 1:39 PM · Breaking Change, MITK (v2021.10)
kislinsk updated the task description for T28737: Remove last remains of .pic support.
Thu, Oct 14, 1:31 PM · Breaking Change, MITK (v2021.10)
kislinsk added a subtask for T28737: Remove last remains of .pic support: T13958: Replace all *.pic and *.pic.gz files in MITK by *.nrrd.
Thu, Oct 14, 1:30 PM · Breaking Change, MITK (v2021.10)
kislinsk triaged T28737: Remove last remains of .pic support as Normal priority.
Thu, Oct 14, 1:30 PM · Breaking Change, MITK (v2021.10)