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Yesterday

floca added a comment to T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation.

oops, sorry. than I have mixed something up.

Fri, Jul 30, 5:02 PM · MITK (v2021.10)
kleina added a comment to T26172: 2D interpolation in MultiLabelSegmentation Editor only works for 1. label .

Ehm... I cannot do Interpolation in MultiLabelSegmentation I think. Shouldn't there be a drop down?

image.png (431×495 px, 15 KB)

Fri, Jul 30, 4:26 PM · MITK (v2021.10)
kalali updated subscribers of T26172: 2D interpolation in MultiLabelSegmentation Editor only works for 1. label .
Fri, Jul 30, 4:06 PM · MITK (v2021.10)
kalali added a comment to T26172: 2D interpolation in MultiLabelSegmentation Editor only works for 1. label .

Is this task still valid? If I try what's written in the description (after showing the interpolation widget), nothing happens, not even on the first label.

Fri, Jul 30, 4:05 PM · MITK (v2021.10)
kalali updated subscribers of T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation.

@kalali Aren't you already working on that topic? I thought, i just reviewed something in that direction?!?

Fri, Jul 30, 3:31 PM · MITK (v2021.10)
kalali added a comment to T28649: Deprecated classes in ImageExtraction-module are not used.

Ok I don't really understand how to work with the ExtractSliceFilter and how to replace what's currently done inside PlanarFigureMaskGenerator::CalculateMask(). Maybe someone can help and explain the different usages of ExtractSliceFilter and ExtractImageFilter and how to correctly set the desired slice for the slice filter.

Fri, Jul 30, 2:19 PM · MITK (v2021.10)
kalali added a comment to T28649: Deprecated classes in ImageExtraction-module are not used.

I just realized that PlanarFigureMaskGenerator is still using the ExtractImageFilter from this module. Other classes use ExtractSliceFilter (which is the recommended version). So in order to remove the ImageExtraction-module, I will replace the filter inside PlanarFigureMaskGenerator.

Fri, Jul 30, 11:45 AM · MITK (v2021.10)
kalali moved T27713: [Segmentation] Disable "New" button when no image is selected from MITK Meeting to Backlog on the Request for Discussion board.
Fri, Jul 30, 10:25 AM · MITK (v2021.10), Request for Discussion

Thu, Jul 29

kalali triaged T28650: [Selection concept] (Re)setting a data storage does not automatically check for matching nodes as High priority.
Thu, Jul 29, 4:46 PM · MITK (v2021.10)
kalali added a comment to T28635: [Segmentation] Remove deprecated classes.

A first differential was created. There is another class QmitkThresholdAction that is not included anywhere and has not been touched for a long time. I don't see any reason for keeping this class. So I'd like to update the differential with the removal of this class as well.

Thu, Jul 29, 4:38 PM · Cleared, MITK (v2021.10)
kalali added a revision to T28635: [Segmentation] Remove deprecated classes: Restricted Differential Revision.
Thu, Jul 29, 4:36 PM · Cleared, MITK (v2021.10)
kalali added a comment to T28635: [Segmentation] Remove deprecated classes.

When I look for occurrences of mitkOverwriteSliceImageFilter, I see a description inside ApplyDiffImageOperation and DiffImageApplier that says

At the moment, ApplyDiffImageOperations are only created by OverwriteSliceImageFilter.

or

Instances of this class are created e.g. by OverwriteSliceImageFilter.

However, the mentioned mitkOverwriteSliceImageFilter is nowhere used and was replaced by mitkVtkImageOverwrite. I found occurrences of ApplyDiffImageOperation and DiffImageApplier inside QmitkSlicesInterpolator.cpp, so I changed the description accordingly.

Thu, Jul 29, 4:35 PM · Cleared, MITK (v2021.10)
kalali moved T28649: Deprecated classes in ImageExtraction-module are not used from Backlog to Cycle on the MITK (v2021.10) board.
Thu, Jul 29, 4:21 PM · MITK (v2021.10)
kalali triaged T28649: Deprecated classes in ImageExtraction-module are not used as Normal priority.
Thu, Jul 29, 4:21 PM · MITK (v2021.10)
kleina updated subscribers of T28607: [Segmentation] LiveWire tool issues and improvements.
Thu, Jul 29, 3:45 PM · MITK (v2021.10)
kleina added a comment to T28607: [Segmentation] LiveWire tool issues and improvements.

The listed changes have been implemented. I realized that there is an issue with the automatically created "last segment". If I click there to create a new control point and move it, I get the behavior shown in the image (sorry, I tried to explain it in words but failed).

image.png (649×696 px, 206 KB)

Thu, Jul 29, 3:45 PM · MITK (v2021.10)
kalali claimed T28635: [Segmentation] Remove deprecated classes.
Thu, Jul 29, 12:37 PM · Cleared, MITK (v2021.10)
kalali moved T28635: [Segmentation] Remove deprecated classes from Segmentation to Cycle on the MITK (v2021.10) board.
Thu, Jul 29, 12:37 PM · Cleared, MITK (v2021.10)

Wed, Jul 28

floca removed a project from T28244: [Segmentation] Fast Marching Tool not really responsive for large images: Missing Info.
Wed, Jul 28, 1:35 PM · MITK (v2021.10)
floca lowered the priority of T28244: [Segmentation] Fast Marching Tool not really responsive for large images from High to Low.

Down prioritized it, because survey indicated currently low relevance.

Wed, Jul 28, 1:34 PM · MITK (v2021.10)
a178n closed T28523: Evaluate MITK segmentation survey, a subtask of T28320: [Segmentation] Region growing does not work if seed point is already inside a segmentation, as Resolved.
Wed, Jul 28, 1:22 PM · Missing Info, MITK (v2021.10), Request for Discussion
a178n closed T28523: Evaluate MITK segmentation survey, a subtask of T28244: [Segmentation] Fast Marching Tool not really responsive for large images, as Resolved.
Wed, Jul 28, 1:22 PM · MITK (v2021.10)
a178n closed T28523: Evaluate MITK segmentation survey, a subtask of T28247: [Segmentation] Watershed tool freezes when slider and threshold are set to a low value, as Resolved.
Wed, Jul 28, 1:22 PM · Missing Info, MITK (v2021.10), Request for Discussion
a178n closed T28523: Evaluate MITK segmentation survey, a subtask of T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep, as Resolved.
Wed, Jul 28, 1:22 PM · MITK (v2021.10)
a178n closed T28523: Evaluate MITK segmentation survey, a subtask of T28145: SetRegionTool does not work as expected (flood fill like) with concentric structures., as Resolved.
Wed, Jul 28, 1:22 PM · MITK (v2021.10)
a178n closed T28523: Evaluate MITK segmentation survey, a subtask of T28479: [Segmentation] Rethink / reevaluate our existing segmentation tools / algorithms, as Resolved.
Wed, Jul 28, 1:22 PM · MITK (v2021.10)
a178n closed T28523: Evaluate MITK segmentation survey as Resolved.
Wed, Jul 28, 1:22 PM · MITK (v2021.10)
a178n closed T28523: Evaluate MITK segmentation survey, a subtask of T28499: Refactor/rewrite RegionGrowing3D tool, as Resolved.
Wed, Jul 28, 1:22 PM · Request for Discussion, MITK (v2021.10)
a178n added a comment to T28523: Evaluate MITK segmentation survey.

Currently, we received 4 responses in total.
Segmentation survey responses now kept as a docx file at hub.dkfz.de in
E230 Group 5 > MITK Planning > Development > MITK Segmentation Survey 2021

Wed, Jul 28, 1:22 PM · MITK (v2021.10)
floca added a parent task for T28525: Design refactoring of LabelSetImage and associated classes: T28145: SetRegionTool does not work as expected (flood fill like) with concentric structures..
Wed, Jul 28, 12:50 PM · MITK (v2021.10)
floca added a subtask for T28145: SetRegionTool does not work as expected (flood fill like) with concentric structures.: T28525: Design refactoring of LabelSetImage and associated classes.
Wed, Jul 28, 12:50 PM · MITK (v2021.10)
floca removed a project from T28145: SetRegionTool does not work as expected (flood fill like) with concentric structures.: Missing Info.
Wed, Jul 28, 12:49 PM · MITK (v2021.10)
floca triaged T28641: [Segmentation] Improve Watershed tool documentation as Normal priority.
Wed, Jul 28, 12:47 PM · Cleared, MITK (v2021.10)
floca moved T28641: [Segmentation] Improve Watershed tool documentation from Backlog to Segmentation on the MITK (v2021.10) board.
Wed, Jul 28, 12:47 PM · Cleared, MITK (v2021.10)
floca created T28641: [Segmentation] Improve Watershed tool documentation.
Wed, Jul 28, 12:47 PM · Cleared, MITK (v2021.10)
floca lowered the priority of T28247: [Segmentation] Watershed tool freezes when slider and threshold are set to a low value from Normal to Low.

Down prioritized it, because survey indicated currently low relevance.

Wed, Jul 28, 12:45 PM · Missing Info, MITK (v2021.10), Request for Discussion
kalali triaged T28640: [Segmentation] Add tool checks for dynamic plugin view as Unbreak Now! priority.
Wed, Jul 28, 12:31 PM · MITK (v2021.10)
s434n added a project to T28631: [PACS] Allow disabling of PACS tools: Request for Discussion.
Wed, Jul 28, 10:57 AM · Request for Discussion, MITK (v2021.10)
kleina claimed T28464: [Segmentation] New Add/Remove tool.
Wed, Jul 28, 10:24 AM · Cleared, MITK (v2021.10)

Tue, Jul 27

floca closed T27571: Multilabel segmentation does not work with US DICOM images as Invalid.
Tue, Jul 27, 9:59 AM · MITK (v2021.10), Missing Info, Restricted Project
floca closed T27571: Multilabel segmentation does not work with US DICOM images, a subtask of T27807: [MultiLabel Segmentation] Inspection of module and plugin, as Invalid.
Tue, Jul 27, 9:59 AM · MITK (v2021.10)
floca added a parent task for T28139: [LabelSetImage] Ambigious meaning of "layer" in LabelSetImage: T28525: Design refactoring of LabelSetImage and associated classes.
Tue, Jul 27, 9:57 AM · Request for Discussion, MITK (v2021.10)
floca added a subtask for T28525: Design refactoring of LabelSetImage and associated classes: T28139: [LabelSetImage] Ambigious meaning of "layer" in LabelSetImage.
Tue, Jul 27, 9:57 AM · MITK (v2021.10)
floca added a parent task for T28140: [MultiLabel Segmentation] Default parameter (unsigned int layer = 0) is unnecessary and causes problems: T28525: Design refactoring of LabelSetImage and associated classes.
Tue, Jul 27, 9:57 AM · Request for Discussion, MITK (v2021.10)
floca added a subtask for T28525: Design refactoring of LabelSetImage and associated classes: T28140: [MultiLabel Segmentation] Default parameter (unsigned int layer = 0) is unnecessary and causes problems.
Tue, Jul 27, 9:57 AM · MITK (v2021.10)
floca added projects to T28134: [Multilabel Segmentation] No warning triggered when using different mask geometries in Utilities View: Cleared, Restricted Project.
Tue, Jul 27, 9:54 AM · Restricted Project, Cleared, MITK (v2021.10)
floca added a project to T27810: [Multilabel Segmentation] Inconsistencies and unclear functionality in operations of Utilities view: Cleared.
Tue, Jul 27, 9:50 AM · Cleared, MITK (v2021.10), Restricted Project
floca added a project to T27637: [Segmentation] Multilabel label name dialoge on label creation is a UX problem: Cleared.
Tue, Jul 27, 9:48 AM · Cleared, MITK (v2021.10)
floca raised the priority of T28464: [Segmentation] New Add/Remove tool from Normal to High.
Tue, Jul 27, 9:46 AM · Cleared, MITK (v2021.10)
floca added a project to T28635: [Segmentation] Remove deprecated classes: Cleared.
Tue, Jul 27, 9:45 AM · Cleared, MITK (v2021.10)