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Today

kalali triaged T28752: [Segmentation] Move Segmentation utilities widgets to SegmentationUI module as Normal priority.
Mon, Oct 18, 12:48 PM · Next Milestone, MITK
kalali added a project to T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation: Breaking Change.
Mon, Oct 18, 12:12 PM · Breaking Change, Next Milestone, MITK
kislinsk closed T28750: 2021 Week 42 (Late October) as Resolved.
Mon, Oct 18, 11:57 AM · MITK
kislinsk edited the content of Changelog.
Mon, Oct 18, 11:56 AM · MITK
kislinsk added a comment to T28750: 2021 Week 42 (Late October).

Deleted branch from rMITK MITK: release/T28750-2021-Week-42.

Mon, Oct 18, 11:56 AM · MITK
kislinsk added a comment to T28750: 2021 Week 42 (Late October).

Pushed new branch to rMITK MITK: release/T28750-2021-Week-42.

Mon, Oct 18, 9:47 AM · MITK
kislinsk triaged T28750: 2021 Week 42 (Late October) as Normal priority.
Mon, Oct 18, 9:46 AM · MITK
kleina added a comment to T28748: [Segmentation] New Add tool: Behavior for modifying painted regions.

I guess in GIMP the behavior is somewhat similar to your second suggestion. As you are not able to set additional points, it is a "restricted region". You can still modify existing points. This is what the tool looks like in GIMP if you move one of the existing points.

Mon, Oct 18, 9:40 AM · Request for Discussion, MITK
kleina added a comment to T28748: [Segmentation] New Add tool: Behavior for modifying painted regions.

One comment to this: The tool was inspired by the behavior of a similar tool in GIMP. In GIMP it is not possible to add additional points after finishing the contour. So they don't have that problem.

Mon, Oct 18, 9:35 AM · Request for Discussion, MITK
kahl moved T28748: [Segmentation] New Add tool: Behavior for modifying painted regions from Backlog to MITK Meeting on the Request for Discussion board.
Mon, Oct 18, 9:28 AM · Request for Discussion, MITK
kahl triaged T28748: [Segmentation] New Add tool: Behavior for modifying painted regions as Normal priority.
Mon, Oct 18, 9:28 AM · Request for Discussion, MITK
kalali edited projects for T28181: [Segmentation] Should warning messages be passed on to the UI?, added: MITK, Next Milestone; removed MITK (v2021.10).
Mon, Oct 18, 8:44 AM · Next Milestone, MITK
kalali edited projects for T28649: Deprecated classes in ImageExtraction-module are not used, added: MITK, Next Milestone; removed MITK (v2021.10).
Mon, Oct 18, 8:43 AM · Next Milestone, MITK, Request for Discussion

Yesterday

floca renamed T28726: [Segmentation] Temporal interpolation from Temporal interpolation to [Segmentation] Temporal interpolation.
Sun, Oct 17, 9:05 PM · MITK
kislinsk lowered the priority of T28726: [Segmentation] Temporal interpolation from Normal to Wishlist.
Sun, Oct 17, 10:50 AM · MITK

Fri, Oct 15

kleina added a comment to T28726: [Segmentation] Temporal interpolation.

The users have 2D+t data. The current workaround is to convert the 2D+t data to a 3D volume, where one slice is one timepoint and interpolate like this. This is not a perfect solution, as the 3D interpolation tries to interpolate to something like a "round" or "organ shaped" object, which does not make sense in this case.

Fri, Oct 15, 3:31 PM · MITK
kalali lowered the priority of T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation from Unbreak Now! to High.
Fri, Oct 15, 2:03 PM · Breaking Change, Next Milestone, MITK
kalali closed T26492: [mxn multi widget] Send active render window, a subtask of T28578: [mxn multi widget] Optimization of the mxn multi widget, as Resolved.
Fri, Oct 15, 1:58 PM · MITK
kalali closed T26492: [mxn multi widget] Send active render window as Resolved.
Fri, Oct 15, 1:58 PM · Breaking Change, MITK (v2021.10)
kalali closed T24635: PACS scroll leads to an infinite loop if no image is loaded, a subtask of T26486: PACS mouse mode does not allow scrolling with mouse wheel, as Resolved.
Fri, Oct 15, 1:47 PM · Breaking Change, MITK (v2021.10)
kalali closed T24635: PACS scroll leads to an infinite loop if no image is loaded as Resolved.
Fri, Oct 15, 1:47 PM · MITK
kalali closed T28743: [mxn multi widget] Warnings due to functions without override specifier as Resolved.
Fri, Oct 15, 1:38 PM · MITK
kalali added a revision to T28743: [mxn multi widget] Warnings due to functions without override specifier: Restricted Differential Revision.
Fri, Oct 15, 1:21 PM · MITK
kalali triaged T28743: [mxn multi widget] Warnings due to functions without override specifier as Normal priority.
Fri, Oct 15, 1:19 PM · MITK
kalali added a revision to T24635: PACS scroll leads to an infinite loop if no image is loaded: Restricted Differential Revision.
Fri, Oct 15, 11:18 AM · MITK
kalali closed T26486: PACS mouse mode does not allow scrolling with mouse wheel, a subtask of T24356: Rework mouse mode switcher, as Resolved.
Fri, Oct 15, 10:39 AM · MITK
kalali closed T26486: PACS mouse mode does not allow scrolling with mouse wheel as Resolved.

I will close this now, discussion can be continued in T28741.

Fri, Oct 15, 10:39 AM · Breaking Change, MITK (v2021.10)
kalali triaged T28741: Should auto-repeat mode be enabled in MITK and / or PACS mode? as Normal priority.
Fri, Oct 15, 10:38 AM · MITK
kislinsk closed T24358: Rework QmitkMouseModeSwitcher, a subtask of T24356: Rework mouse mode switcher, as Resolved.
Fri, Oct 15, 9:16 AM · MITK
kislinsk closed T24358: Rework QmitkMouseModeSwitcher as Resolved.

Thanks!

Fri, Oct 15, 9:16 AM · MITK
franza reopened T26371: MITK crash when starting tracking during editing tool information as "Open".
Fri, Oct 15, 9:12 AM · IGT, MITK
franza reopened T26675: Logging of absolute time stamps is not possible as "Open".
Fri, Oct 15, 9:02 AM · IGT, MITK
kalali added a comment to T24358: Rework QmitkMouseModeSwitcher.

This is a good candidate for some XML parsing errors that we see in the latest develop version of the MitkWorkbench, For example, activate any 3D segmentation tool and look at the console output:

vtkXMLParser.cxx:379 ERR| vtkXMLParser (0000027698218908): Error parsing XML in stream at line 1, column 0, byte index -1: no element found

It starts with line 162 in mitkTool.cpp (last code line in snippet):

auto displayActionEventBroadcast = dynamic_cast<DisplayActionEventBroadcast*>(us::GetModuleContext()->GetService<InteractionEventObserver>(*it));
if (displayActionEventBroadcast != nullptr)
{
  // remember the original configuration
  m_DisplayInteractorConfigs.insert(std::make_pair(*it, displayActionEventBroadcast->GetEventConfig()));
  // here the alternative configuration is loaded
  displayActionEventBroadcast->AddEventConfig(m_EventConfig.c_str()); // line 162, m_EventConfig is an empty string
}

I guess m_EventConfig is not supposed to be an empty string. Or, if it is supposed to be an empty string, AddEventConfig() should probably handle it gracefully, before the vtkXMLParser has the chance to complain.

Fri, Oct 15, 8:54 AM · MITK
kislinsk reopened T24358: Rework QmitkMouseModeSwitcher as "Open".

This is a good candidate for some XML parsing errors that we see in the latest develop version of the MitkWorkbench, For example, activate any 3D segmentation tool and look at the console output:

Fri, Oct 15, 7:20 AM · MITK
kislinsk reopened T24358: Rework QmitkMouseModeSwitcher, a subtask of T24356: Rework mouse mode switcher, as Open.
Fri, Oct 15, 7:20 AM · MITK
kislinsk placed T27701: Overhaul or remove PluginGenerator up for grabs.
Fri, Oct 15, 5:21 AM · Next Milestone, MITK
kalali closed T26633: [mxn multi widget] Show different time points of data, a subtask of T28578: [mxn multi widget] Optimization of the mxn multi widget, as Resolved.
Fri, Oct 15, 1:10 AM · MITK
kalali closed T26633: [mxn multi widget] Show different time points of data as Resolved.
Fri, Oct 15, 1:10 AM · Restricted Project, MITK

Thu, Oct 14

floca added a project to T27437: Migrate MITK to use ITK 5.x : Next Milestone.
Thu, Oct 14, 5:53 PM · Next Milestone, MITK
patmjen added a comment to T28738: MITK does not build on Mac OS 11.6.

Thank you for such a quick answer. I have now got MITK to build with clang.

Thu, Oct 14, 5:06 PM · MITK
kislinsk closed T13958: Replace all *.pic and *.pic.gz files in MITK by *.nrrd as Resolved.
Thu, Oct 14, 4:40 PM · Auto-closed, Bugzilla, MITK
nolden added a comment to T28428: Re-enable code coverage testing in MITK CI.

I found one last hint, about a possible interference with ccache , last try ...

Thu, Oct 14, 3:47 PM · CI, MITK
nolden added a comment to T28428: Re-enable code coverage testing in MITK CI.

I tried several things again, similar to described above, same situation.

Thu, Oct 14, 3:38 PM · CI, MITK
kislinsk closed T28738: MITK does not build on Mac OS 11.6 as Wontfix.

Hi and thank you for the comprehensive report. I noticed you use GCC. We support Apple LLVM (Clang) on macOS Mojave, Catalina, and Big Sur. See https://docs.mitk.org/nightly/SupportedPlatformsPage.html for support level details regarding tier 1 and tier 2. Our continuous and nightly build reports can be found here: https://cdash.mitk.org/index.php?project=MITK.

Thu, Oct 14, 2:11 PM · MITK
patmjen created T28738: MITK does not build on Mac OS 11.6.
Thu, Oct 14, 1:34 PM · MITK
kislinsk added a parent task for T13958: Replace all *.pic and *.pic.gz files in MITK by *.nrrd: T28737: Remove last remains of .pic support.
Thu, Oct 14, 1:30 PM · Auto-closed, Bugzilla, MITK
isensee added a comment to T28493: Multilabel color map colors are not very nice.

The labels in my example are consecutive integers. And even if they weren't the color mapping should skip unused integer values. Use equivalent of np.unique(segmentation) to determine used labels and set the map accordingly.

Thu, Oct 14, 12:41 PM · MITK
isensee updated the task description for T28736: Preferences for segmentation '2D display' are not properly utilized.
Thu, Oct 14, 12:33 PM · MITK (v2021.10)
isensee created T28736: Preferences for segmentation '2D display' are not properly utilized.
Thu, Oct 14, 12:32 PM · MITK (v2021.10)
floca reopened T24795: ModelFit visualization bug? as "Open".
Thu, Oct 14, 12:06 PM · MITK, Restricted Project