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Mar 27 2019

eisenman added a comment to T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04].

I will have a further look into this the upcoming Community Day.

Mar 27 2019, 6:48 PM · Photoacoustics, Restricted Project, IGT, MITK
kislinsk added a comment to T26170: Integration of REST Module.
  • The modules cannot be auto-loaded on Windows because the bin path of OpenSSL isn't specified.
Mar 27 2019, 4:02 PM · MITK
kislinsk added a comment to T26170: Integration of REST Module.
  • Linked manual in module manuals
  • Cleaned up dependencies to cpprestsdk
  • Removed/replaced MITK_USE_CppRestSdk by MITK_USE_cpprestsdk
  • Removed global definition _WIN32_WINNT=0x0501
  • Globally disabled C4251 warning
Mar 27 2019, 2:32 PM · MITK
hentsch triaged T26205: VIsualizing empty statistics container leads to crash in QmitkImageStatisticsTableModel as Normal priority.
Mar 27 2019, 1:29 PM · MITK
kislinsk added a comment to T26170: Integration of REST Module.

Pushed new branch T26170-Fixes.

Mar 27 2019, 11:26 AM · MITK
neher closed T26168: Linux installer shell scripts error as Resolved.
Mar 27 2019, 9:56 AM · MITK
neher closed T26189: [MITK Diffusion] Enable adc calculation in cmdapp as Resolved.
Mar 27 2019, 9:55 AM · MITK
neher added a comment to T26189: [MITK Diffusion] Enable adc calculation in cmdapp.

Pushed new branch T26189-Adc2.

Mar 27 2019, 9:54 AM · MITK
neher added a comment to T26189: [MITK Diffusion] Enable adc calculation in cmdapp.

Pushed new branch T26189-Adc.

Mar 27 2019, 9:37 AM · MITK
hentsch triaged T26190: Enable double-click in Qmitk*NodeSelectionWidget as Wishlist priority.
Mar 27 2019, 9:34 AM · MITK
neher triaged T26189: [MITK Diffusion] Enable adc calculation in cmdapp as Wishlist priority.
Mar 27 2019, 9:31 AM · MITK
hentsch triaged T26188: Don't use itk smart pointer for input in ImageStatisticsCalculator as High priority.
Mar 27 2019, 9:31 AM · MITK
hentsch created T26188: Don't use itk smart pointer for input in ImageStatisticsCalculator.
Mar 27 2019, 9:30 AM · MITK
kislinsk claimed T26170: Integration of REST Module.
Mar 27 2019, 8:30 AM · MITK
neher closed T26057: Remove mitkCommandLineParser input and output types as Resolved.
Mar 27 2019, 7:51 AM · MITK

Mar 26 2019

amancino90 created T26187: Create polygon model works only once.
Mar 26 2019, 6:56 PM
neher added a comment to T26057: Remove mitkCommandLineParser input and output types.

Pushed new branch T26057-CmdTypes.

Mar 26 2019, 2:40 PM · MITK
neher added a comment to T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04].

@eisenman ?

Mar 26 2019, 2:38 PM · Photoacoustics, Restricted Project, IGT, MITK
neher reopened T26057: Remove mitkCommandLineParser input and output types as "Open".
Mar 26 2019, 2:36 PM · MITK
neher closed T26057: Remove mitkCommandLineParser input and output types as Resolved.
Mar 26 2019, 8:49 AM · MITK
neher closed T26182: [MITK Diffusion] Fix tractseg as Resolved.
Mar 26 2019, 8:47 AM · MITK
neher added a comment to T26182: [MITK Diffusion] Fix tractseg.

Pushed new branch T26182-TractSeg.

Mar 26 2019, 8:43 AM · MITK
neher triaged T26182: [MITK Diffusion] Fix tractseg as Normal priority.
Mar 26 2019, 8:40 AM · MITK

Mar 25 2019

neher triaged T26180: Implement readout gradient dephasing as Wishlist priority.
Mar 25 2019, 9:44 AM · MITK Diffusion
neher triaged T26179: [MITK Diffusion] Fiberfox: account for partial fourier in ETL calculation as Normal priority.
Mar 25 2019, 9:44 AM · MITK

Mar 22 2019

hettich renamed T25988: LabelSetImageIO should support time geometries and property serialization from LabelSetImageIO should support time geomatries and property serialization to LabelSetImageIO should support time geometries and property serialization.
Mar 22 2019, 5:33 PM · MITK (v2021.02)
franza added a comment to T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04].

If we disable openigtlink, all IGT modules/Plugins won't work. This is not an option for me. I think the main problem is to configure the build system in the right way.

Mar 22 2019, 3:36 PM · Photoacoustics, Restricted Project, IGT, MITK
kahl placed T26170: Integration of REST Module up for grabs.
Mar 22 2019, 3:23 PM · MITK
kahl added a comment to T26170: Integration of REST Module.

My CppRestSdk and CppRestSdkQt modules are now integrated. I also added a doxygen file as a guide for how to use the module but I'm not sure whether this is displayed correctly, so this needs to be checked. In the end it should be on the doxygen page in the section Module Manuals (e.g. as Chart documentation).
If this is checked, the branch can be integrated in the master.

Mar 22 2019, 3:15 PM · MITK
floca closed T25065: Incorrect loading of DICOM images generated by SIEMENS MR-PET as Invalid.

Talked with the colleagues. Currently the problem can not be reproduced (maybe another update fixed the problem). So "watchfull waiting". We will reopen/reprioritze it, if it occurs again.

Mar 22 2019, 2:30 PM · Restricted Project, MITK
neher added a comment to T24778: OpenIGTlink does not build in superbuild [Ubuntu 18.04].

This is still an issue. It was dicussed to disable openigtlink otherwise.

Mar 22 2019, 2:16 PM · Photoacoustics, Restricted Project, IGT, MITK
floca placed T24303: A segmentation should generate all DICOM relevant IDs as soon as it can be referenced. up for grabs.
Mar 22 2019, 2:15 PM · Auto-closed, DICOM, MITK
neher closed T26166: [MITK Diffusion] Fiberfox relaxation times as Resolved.
Mar 22 2019, 12:07 PM · MITK
steint added a comment to T26094: Classic C++ REST SDK superbuild integration.

Okay, never mind. Now it works and i am not quite sure what i have done..
Maybe because i removed vcpkg from PATH.

Mar 22 2019, 8:52 AM · MITK
steint added a comment to T26094: Classic C++ REST SDK superbuild integration.

I cannot build Boost while MITK_USE_cpprestsdk is ON.

Mar 22 2019, 8:27 AM · MITK

Mar 21 2019

murray created T26172: 2D interpolation in MultiLabelSegmentation Editor only works for 1. label .
Mar 21 2019, 1:49 PM · MITK (v2023.04)
kahl added a comment to T26170: Integration of REST Module.

Pushed new branch T26170-integration-of-rest-module.

Mar 21 2019, 11:00 AM · MITK
kahl triaged T26170: Integration of REST Module as Wishlist priority.
Mar 21 2019, 10:58 AM · MITK
hentsch claimed T26169: Minimize Module dependencies.
Mar 21 2019, 10:04 AM · MITK
hentsch triaged T26169: Minimize Module dependencies as Low priority.
Mar 21 2019, 9:43 AM · MITK
neher added a revision to T26168: Linux installer shell scripts error: Restricted Differential Revision.
Mar 21 2019, 9:42 AM · MITK
neher added a comment to T26168: Linux installer shell scripts error.

Pushed new branch T26168-QtToStartScript.

Mar 21 2019, 9:41 AM · MITK
neher triaged T26168: Linux installer shell scripts error as Normal priority.
Mar 21 2019, 9:39 AM · MITK

Mar 20 2019

kraeuter closed T26073: [Chart] Implement stacked bar charts as Resolved.
Mar 20 2019, 3:03 PM · Restricted Project, MITK
kraeuter closed T26073: [Chart] Implement stacked bar charts, a subtask of T23104: Deprecate QmitkPlotWidget, as Resolved.
Mar 20 2019, 3:03 PM · Auto-closed, Restricted Project, MITK
hentsch added a comment to T23104: Deprecate QmitkPlotWidget.

first, we have to migrate the existing plots to MitkChart (T23385, T23386, T25832), then we can set the whole class deprecated

Mar 20 2019, 1:40 PM · Auto-closed, Restricted Project, MITK
floca added a comment to T26158: Perfomance loss due to intense (time)geometry clonig.

Befor we follow this idea any further, T26167 should be solved and performance should be checked again.

Mar 20 2019, 10:49 AM · Auto-closed, MITK
floca triaged T26167: ExtractSliceFilter handles 3D+t images inefficiently and inconsequently as Normal priority.
Mar 20 2019, 10:46 AM · MITK
kraeuter added a comment to T26073: [Chart] Implement stacked bar charts.

Pushed new branch T26073-ImplementStackedBarCharts.

Mar 20 2019, 10:29 AM · Restricted Project, MITK
kraeuter claimed T26073: [Chart] Implement stacked bar charts.
Mar 20 2019, 9:05 AM · Restricted Project, MITK
neher added a comment to T26166: [MITK Diffusion] Fiberfox relaxation times.

Pushed new branch T26166-FiberfoxRelaxTimes.

Mar 20 2019, 9:03 AM · MITK
neher triaged T26166: [MITK Diffusion] Fiberfox relaxation times as Normal priority.
Mar 20 2019, 9:02 AM · MITK

Mar 19 2019

hentsch closed T26071: Title option into global options as Resolved.
Mar 19 2019, 2:38 PM · Restricted Project, MITK
hentsch closed T26071: Title option into global options, a subtask of T23104: Deprecate QmitkPlotWidget, as Resolved.
Mar 19 2019, 2:38 PM · Auto-closed, Restricted Project, MITK
hentsch merged Restricted Maniphest Task into T25833: Leak/Debugbreak when closing workbench related to MitkChart.
Mar 19 2019, 2:34 PM · Restricted Project, MITK
hentsch closed T26072: Color doesn´t work on anything but Line as Resolved.
Mar 19 2019, 2:33 PM · Restricted Project, MITK
hentsch closed T26072: Color doesn´t work on anything but Line, a subtask of T23104: Deprecate QmitkPlotWidget, as Resolved.
Mar 19 2019, 2:33 PM · Auto-closed, Restricted Project, MITK
hentsch removed a project from T26080: [QmitkImageStatisticsTableModel] Multiple masks instead multiple timesteps: Restricted Project.
Mar 19 2019, 2:28 PM · MITK
hentsch closed T23191: Image Statistics plugin: 4D data + intensity profile does not work as Resolved by committing rMITK9247f6b10d5e: resolved T23191: 4D image is splitted in 3D and then intensity is calculated.
Mar 19 2019, 12:05 PM · MITK
hentsch added a comment to T23191: Image Statistics plugin: 4D data + intensity profile does not work.

Pushed new branch T23191-4DIntensityProfile.

Mar 19 2019, 11:52 AM · MITK
kraeuter closed T25918: [imageStatisticsCalculator] Rename StatisticsObject to ImageStatisticsObject as Resolved.
Mar 19 2019, 8:13 AM · MITK
kraeuter closed T25918: [imageStatisticsCalculator] Rename StatisticsObject to ImageStatisticsObject, a subtask of T25512: Restructure image statistics calculator, as Resolved.
Mar 19 2019, 8:13 AM · Auto-closed, MITK

Mar 18 2019

metzger added a comment to T25798: Saving segmentations as .dcm (DICOM SEG) does not work.

The derived segmentation can only be saved as DICOM if the original image is a DICOM.

Mar 18 2019, 12:33 PM · MITK
guojun removed a watcher for MITK: guojun.
Mar 18 2019, 2:16 AM

Mar 15 2019

hentsch added a comment to T25682: mitkBaseGeometry.cpp: Internal ITK matrix inversion error, cannot proceed..

could also be that the problems arise due to ITK update (2016.03: 4.7.1, 2016.11: 4.9.0).
We could check that with MITK code from end 2016 and an updated ITK version.

Mar 15 2019, 1:32 PM · MITK
hentsch updated subscribers of T25682: mitkBaseGeometry.cpp: Internal ITK matrix inversion error, cannot proceed..

In MITK 2016.03, Reinit on the respective data sets work, whereas in MITK 2016.11, it does not work any more.
Hence, it has to do something with the changes introduces by @espak in Geometry (1ca1a7b0574).

Mar 15 2019, 1:10 PM · MITK
hentsch added a comment to T25682: mitkBaseGeometry.cpp: Internal ITK matrix inversion error, cannot proceed..

futher analyses:

  • newer data tends to work better
    • newer in terms of date
    • newer in terms of acquisition machine software version
  • working and not working data stems from the same machine (Siemens)
Mar 15 2019, 1:04 PM · MITK
gaoh added a comment to T19999: DICOM CGet and CMove don't work correctly.

The log entries don't tell me a lot, basically I thing for every file it writes: ERROR: setting value to 0
Just in the end, before the termination the log entries change to:

Mar 15 2019, 12:30 PM · Restricted Project, Restricted Project, MITK
kislinsk removed a project from T23040: PluginGenerator doesn't work: Request for Discussion.
Mar 15 2019, 11:43 AM · MITK
kislinsk moved T24303: A segmentation should generate all DICOM relevant IDs as soon as it can be referenced. from Backlog to MITK Meeting on the Request for Discussion board.
Mar 15 2019, 11:41 AM · Auto-closed, DICOM, MITK
kislinsk moved T25963: "Segmentation" property is rarely used from Backlog to MITK Meeting on the Request for Discussion board.
Mar 15 2019, 11:40 AM · MITK
kislinsk removed a project from T26057: Remove mitkCommandLineParser input and output types: Request for Discussion.
Mar 15 2019, 11:40 AM · MITK
kislinsk removed a project from T26158: Perfomance loss due to intense (time)geometry clonig: Request for Discussion.
Mar 15 2019, 11:39 AM · Auto-closed, MITK
kislinsk removed a project from T25805: Standardize/Rework DICOM module naming: Request for Discussion.
  1. DICOM
  2. IO suffix
  3. Yes!
  4. Surprise! Remove dependency to other auto-load modules. k thx bye
Mar 15 2019, 11:34 AM · Noteworthy, Breaking Change, MITK (v2021.02), DICOM
kislinsk triaged T25988: LabelSetImageIO should support time geometries and property serialization as High priority.

This is important to be fixed soon-ish. Potential candidate for the next bugfix release.

Mar 15 2019, 11:30 AM · MITK (v2021.02)
kislinsk moved T26165: How to handle erroneous DICOMS/input data? from MITK Meeting to Backlog on the Request for Discussion board.
Mar 15 2019, 11:26 AM · Request for Discussion, DICOM, MITK
kislinsk removed a project from T25942: Annotation instances should not be services (?): Request for Discussion.
Mar 15 2019, 11:25 AM · MITK
kislinsk triaged T25942: Annotation instances should not be services (?) as Normal priority.
Mar 15 2019, 11:23 AM · MITK
kislinsk removed a project from T25942: Annotation instances should not be services (?): Request for Discussion.

Okay, this is surprising. Let's talk about this when Simon is back. We should definitely change this design to a "manager approach".

Mar 15 2019, 11:23 AM · MITK
kislinsk triaged T25625: consistent updating of MTime() when updating MTime of class objects as Normal priority.
Mar 15 2019, 11:18 AM · MITK
kislinsk removed a project from T25625: consistent updating of MTime() when updating MTime of class objects: Request for Discussion.

It should be modified.

Mar 15 2019, 11:17 AM · MITK
hentsch moved T26165: How to handle erroneous DICOMS/input data? from Backlog to MITK Meeting on the Request for Discussion board.
Mar 15 2019, 8:42 AM · Request for Discussion, DICOM, MITK
hentsch added a project to T26165: How to handle erroneous DICOMS/input data?: Request for Discussion.
Mar 15 2019, 8:41 AM · Request for Discussion, DICOM, MITK
hentsch added a project to T26165: How to handle erroneous DICOMS/input data?: DICOM.
Mar 15 2019, 8:41 AM · Request for Discussion, DICOM, MITK
hentsch triaged T26165: How to handle erroneous DICOMS/input data? as Normal priority.
Mar 15 2019, 8:40 AM · Request for Discussion, DICOM, MITK
guojun added a watcher for MITK: guojun.
Mar 15 2019, 8:18 AM

Mar 14 2019

floca raised the priority of T25625: consistent updating of MTime() when updating MTime of class objects from Normal to Needs Triage.
Mar 14 2019, 3:19 PM · MITK
floca moved T25805: Standardize/Rework DICOM module naming from Backlog to MITK Meeting on the Request for Discussion board.
Mar 14 2019, 3:19 PM · Noteworthy, Breaking Change, MITK (v2021.02), DICOM
floca moved T25988: LabelSetImageIO should support time geometries and property serialization from Backlog to MITK Meeting on the Request for Discussion board.
Mar 14 2019, 3:16 PM · MITK (v2021.02)
floca moved T25942: Annotation instances should not be services (?) from Backlog to MITK Meeting on the Request for Discussion board.
Mar 14 2019, 3:15 PM · MITK
kislinsk triaged T26164: DICOM Query/Retrieve doesn't work at least in Ubuntu release installers as High priority.
Mar 14 2019, 2:21 PM · Cleared, MITK (v2021.02)
hentsch added a comment to T25833: Leak/Debugbreak when closing workbench related to MitkChart.

further hints: https://github.com/electron/electron/issues/15133

Mar 14 2019, 10:36 AM · Restricted Project, MITK
kislinsk triaged T26163: Windows installer packages contain some debug binaries as Normal priority.
Mar 14 2019, 10:22 AM · MITK
kislinsk triaged T26162: mitk_create_module PACKAGE_DEPENDS cannot handle target namespaces as Normal priority.
Mar 14 2019, 9:36 AM · MITK
kislinsk closed T26094: Classic C++ REST SDK superbuild integration as Resolved.
Mar 14 2019, 9:09 AM · MITK
kislinsk closed T26161: Integrate MITK v2018.04.2 into master as Resolved.
Mar 14 2019, 9:09 AM · MITK
kislinsk added a comment to T26161: Integrate MITK v2018.04.2 into master.

Pushed new branch T26161-IntegrateMITKv2018.04.2.

Mar 14 2019, 9:08 AM · MITK
kislinsk triaged T26161: Integrate MITK v2018.04.2 into master as Wishlist priority.
Mar 14 2019, 8:56 AM · MITK

Mar 13 2019

hentsch added a comment to T23104: Deprecate QmitkPlotWidget.

deprecation leads to errors in GCC

Mar 13 2019, 4:56 PM · Auto-closed, Restricted Project, MITK
kislinsk edited projects for T26160: [PR232] Tiny refactoring of BoundingShapeVtkMapper2d, added: MITK; removed MITK (2018-04-2).

Sorry, this was too close to the MITK 2018.04.2 release to be considered to be part of the bugfix release.

Mar 13 2019, 4:01 PM · MITK, Pull Request