The current solution was never meant as a user interface but only for saving slice positions in scene files. However, it turned out that it is quite handy to jump to drawn contours with a simple click so we should probably move the list of positions into the segmentation view itself if needed.
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Jan 12 2022
Jan 12 2022
kislinsk removed a project from T27060: [Segmentation] Rework InterpolationWidget to not depend on data manager view directly: Request for Discussion.
kislinsk edited projects for T28649: Deprecated classes in ImageExtraction-module are not used, added: MITK; removed MITK (v2022.04), Request for Discussion.
kislinsk added a comment to T28903: [Segmentation] Monitoring of segmentation nodes in views is error prone/ not safe..
Suggestion: Open another task for ensuring at least default properties like "visible" that we can then kind of rely on.
kislinsk removed a project from T28262: TimeGeometry inconsistent documentation and implementation of time bounds and checks: Request for Discussion.
We can assume that this is a time-intensive task and a few solutions were already proposed but we do not see how to resolve it completely at the moment with our available resources.
kislinsk removed a project from T28725: VTP files cannot be opened from paths with "special" characters: Request for Discussion.
Jan 11 2022
Jan 11 2022
Thank your for the report. I removed all erroneous MITK_DEBUG calls as they should be used rarely anyway.
Deleted branch from rMITK MITK: bugfix/T28910-MITK_DEBUG-Errors.
Remove erroneous MITK_DEBUG lines
kislinsk committed rMITK6af4792c2c0b: Fix/reduce dependency to WebEngineCore (authored by kislinsk).
Fix/reduce dependency to WebEngineCore
kislinsk committed rMITK4bec5aa5be6a: Remove fixed version of SimpleITK as recommendation (authored by kislinsk).
Remove fixed version of SimpleITK as recommendation
kislinsk committed rMITK891067173875: Merge branch 'bugfix/T28910-MITK_DEBUG-Errors' into develop (authored by kislinsk).
Merge branch 'bugfix/T28910-MITK_DEBUG-Errors' into develop
Pushed new branch to rMITK MITK: bugfix/T28910-MITK_DEBUG-Errors.
kislinsk triaged T28886: MITK Flowbench - Reopen created segmentation not working as Normal priority.
kislinsk added a subtask for T28886: MITK Flowbench - Reopen created segmentation not working: Unknown Object (Maniphest Task).
Dec 15 2021
Dec 15 2021
Dec 10 2021
Dec 10 2021
Dec 3 2021
Dec 3 2021
Deleted branch from rMITK MITK: release/T28902-2021-Week-48.
Merge branch 'master' into develop
2021 Week 48 (Very Early December)
Pushed new branch to rMITK MITK: release/T28902-2021-Week-48.
Deleted branch from rMITK MITK: bugfix/T28898-AddMoreThan255Labels.
Remove legacy size check
kislinsk committed rMITKbc1afdbf3f25: Merge branch 'bugfix/T28898-AddMoreThan255Labels' into develop (authored by kislinsk).
Merge branch 'bugfix/T28898-AddMoreThan255Labels' into develop
Pushed new branch to rMITK MITK: bugfix/T28898-AddMoreThan255Labels.
Okay, the fix is very simple as there is an unnecessary check in LabelSet::AddLabel() if the size of the label container is bigger than 255 and then return without any further action. I traced it back to the initial implementation of Sebastian Ordas and I guess it is only there since back then it wasn't clear if label sets should be 8-bit or more. So, a no-brainer to remove the check. All other parts of label set obviously work just fine with more labels.
Dec 1 2021
Dec 1 2021
kislinsk added a comment to T28725: VTP files cannot be opened from paths with "special" characters.
Can confirm. Tried to load a VTP from a folder called ßè#$§%&!.
kislinsk renamed T28725: VTP files cannot be opened from paths with "special" characters from Crashes during hands on tutorial to VTP files cannot be opened from paths with "special" characters.
kislinsk closed T28736: Preferences for segmentation '2D display' are not properly utilized as Wontfix.
Stopping here since it also is in consideration for the new segmentation anyway and AFAIK it wont be a property of the segmentation itself anymore.
Nov 30 2021
Nov 30 2021
I experimented a little with changing the order of filters and using other filters (clean poly data before normal generation, PCA normals estimation) but nothing produced consistent results. So I propose to at least implement a simple flip normals action for the DataManager context menu.
kislinsk lowered the priority of T28881: 3D interpolation mesh has inverted normals from Normal to Low.
So, this is not a straight forward fix since other interpolations I tested have correct results. Maybe VTK provides a smart filter for determining the outside that can be used.
Thanks!
kislinsk added a comment to T28882: Properties of initially selected nodes are not shown in Properties View..
Deleted branch from rMITK MITK: bugfix/T28882-FixInitialSelectionInPropertiesView.
kislinsk committed rMITKd0f87205c5b0: Handle initial selection after signal and slots are connected (authored by kislinsk).
Handle initial selection after signal and slots are connected
kislinsk committed rMITK608047a12d38: Merge branch 'bugfix/T28882-FixInitialSelectionInPropertiesView' into develop (authored by kislinsk).
Merge branch 'bugfix/T28882-FixInitialSelectionInPropertiesView' into develop
kislinsk added a comment to T28882: Properties of initially selected nodes are not shown in Properties View..
Pushed new branch to rMITK MITK: bugfix/T28882-FixInitialSelectionInPropertiesView.
kislinsk triaged T28882: Properties of initially selected nodes are not shown in Properties View. as Normal priority.
Can confirm. To reproduce, it is enough to switch on the Surface.2D.Normals.Draw Normals property and check in any 2-d render window. Meshes generated from segmentations in the Data Manager context-menu have correctly oriented normals in contrast.
Nov 22 2021
Nov 22 2021
Nov 18 2021
Nov 18 2021
kislinsk lowered the priority of T28778: "Use constraint zooming and panning" is only applied after reinit/restart from Unbreak Now! to Low.
kislinsk added a comment to T28778: "Use constraint zooming and panning" is only applied after reinit/restart.
Deleted branch from rMITK MITK: bugfix/T28778-fix-rendering-tests.
kislinsk committed rMITK1c4db16fd159: Revert changes to directly apply correct zooming and panning (authored by kahl).
Revert changes to directly apply correct zooming and panning
kislinsk committed rMITKad99aa0b22b9: Revert changes to directly apply correct zooming and panning (authored by kahl).
Revert changes to directly apply correct zooming and panning
Deleted branch from rMITK MITK: feature/T28861-SupportVisualStudio2022.
Handle Visual Studio 2022
Upgrade Boost to version 1.78 beta
kislinsk committed rMITK92e5e45dfdd5: Find compatible Qt binaries for Visual Studio 2022 (authored by kislinsk).
Find compatible Qt binaries for Visual Studio 2022
kislinsk committed rMITK5f4de198d575: Add Visual Studio 2022 as Tier 2 platform (authored by kislinsk).
Add Visual Studio 2022 as Tier 2 platform
kislinsk committed rMITKa8b5789c4365: Merge branch 'feature/T28861-SupportVisualStudio2022' into develop (authored by kislinsk).
Merge branch 'feature/T28861-SupportVisualStudio2022' into develop
Pushed new branch to rMITK MITK: feature/T28861-SupportVisualStudio2022.
IMPORTANT: Visual Studio 2022 didn't work out of the box on my machine. For example, CMake wasn't even able to detect the compilers and I wasn't able to link a minimum executable when using Visual Studio 2022 directly. It always boils down to the linker not being able to find ucrt(d).lib. It seems to be a bug in the default Windows SDK version that comes with Visual Studio 2022 at the moment and/or a bug in Visual Studio 2022 itself, since the SDK works fine with Visual Studio 2019. Fix: In the Visual Studio Installer, uninstall the default Windows 10 SDK (10.0.19041.0) and install Windows 10 SDK (10.0.20348.0).
Nov 17 2021
Nov 17 2021
kislinsk reopened T28778: "Use constraint zooming and panning" is only applied after reinit/restart as "Open".
This fix broke some rendering tests regarding scaling. Please fix/revert as soon as possible since these tests have precedence.
Deleted branch from rMITK MITK: feature/T27437-migrate-to-ITK-5.
Deleted branch from rMITK MITK: feature/T27437-ITK-v5.1.
Pushed new branch to rMITK MITK: feature/T27437-ITK-v5.
Nov 16 2021
Nov 16 2021
kislinsk triaged T28852: [DICOM] support temporal position and encoding for MR images as Wishlist priority.
Nov 10 2021
Nov 10 2021
kislinsk edited projects for T16153: [Segmentation] Jump to center of mass of segmentation on click, added: MITK (v2022.04); removed MITK (v2021.10).
kislinsk edited projects for T27189: REST API for data storage, added: MITK (v2022.04); removed MITK (v2021.10).
kislinsk edited projects for T27149: [Segmentation] Interpolation nodes / position nodes are not correctly hidden, added: MITK (v2022.04); removed MITK (v2021.10).
kislinsk edited projects for T28244: [Segmentation] Fast Marching Tool not really responsive for large images, added: MITK (v2022.04); removed MITK (v2021.10).
kislinsk edited projects for T26959: [Segmentation] Newly created LabelSet segmentation is not displayed as "outline binary", added: MITK (v2022.04); removed MITK (v2021.10).
kislinsk edited projects for T27133: [Segmentation] Is QmitkDataSelectionWidget needed anymore?, added: MITK (v2022.04); removed MITK (v2021.10).
kislinsk edited projects for T25192: Enable DICOM SEG conversion for nrrd segmentations, added: MITK (v2022.04); removed MITK (v2021.10).
kislinsk edited projects for T24738: [Selection concept] Thumbnail preview of images for datastorage inspectors, added: MITK (v2022.04); removed MITK (v2021.10).
kislinsk edited projects for T28247: [Segmentation] Watershed tool freezes when slider and threshold are set to a low value, added: MITK (v2022.04); removed MITK (v2021.10).
kislinsk edited projects for T18014: write tool interaction tests for segmentation, added: MITK (v2022.04); removed MITK (v2021.10).
kislinsk edited projects for T25445: MultiLabel segmentation mapper is very slow, added: MITK (v2022.04); removed MITK (v2021.10).
kislinsk edited projects for T26172: 2D interpolation in MultiLabelSegmentation Editor only works for 1. label , added: MITK (v2022.04); removed MITK (v2021.10).
kislinsk edited projects for T25098: Mapper (partially?) do not handle images correctly if they are out of time bound, added: MITK (v2022.04); removed MITK (v2021.10).
kislinsk edited projects for T25097: ItkImageIOTest: Missing tests for reading nrrd data with time geometry, added: MITK (v2022.04); removed MITK (v2021.10).
kislinsk edited projects for T26953: DICOM SEG - Cannot rewrite segmentations as DICOM SEG, added: MITK (v2022.04); removed MITK (v2021.10).
kislinsk edited projects for T25804: [Selection concept] Set 'selected' property when using the new selection concept, added: MITK (v2022.04); removed MITK (v2021.10).
kislinsk edited projects for T26972: Dialog and plugin layout seems to be not shown correctly on laptops, added: MITK (v2022.04); removed MITK (v2021.10).
kislinsk edited projects for T27060: [Segmentation] Rework InterpolationWidget to not depend on data manager view directly, added: MITK (v2022.04); removed MITK (v2021.10).
kislinsk edited projects for T27455: Go through pull requests, added: MITK (v2022.04); removed MITK (v2021.10).
kislinsk edited projects for T27320: No LocalStorage for PlaneGeometryDataVtkMapper3D, added: MITK (v2022.04); removed MITK (v2021.10).
kislinsk edited projects for T27154: Define clean workflow for segmentation copying, added: MITK (v2022.04); removed MITK (v2021.10).
kislinsk edited projects for T27196: Rewrite packaging of MITK, added: MITK (v2022.04); removed MITK (v2021.10).
kislinsk edited projects for T27377: Suppress or fix all build warnings , added: MITK (v2022.04); removed MITK (v2021.10).