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Oct 5 2022

neher committed rMITKDIFFf3aac4693b28: Add siemens healthineers as vendors (authored by neher).
Add siemens healthineers as vendors
Oct 5 2022, 8:40 AM
neher triaged T29321: Diffusion dicom reader not checling for vendor "Siemens Healthineers" as Normal priority.
Oct 5 2022, 8:37 AM · MITK Diffusion

Oct 4 2022

kalali added a comment to T26376: Segmentation plugin does not work correctly with the new mxn multi widget.

The effect using the MxNMultiWidget

Oct 4 2022, 5:36 PM · MITK (v2022.10)
kislinsk closed T29318: Polish segmentation tool icons and cursors as Resolved.
Oct 4 2022, 5:15 PM · MITK (v2022.10)
kislinsk added a comment to T29318: Polish segmentation tool icons and cursors.

Deleted branch from rMITK MITK: bugfix/T29318-DeleteObsoleteResources.

Oct 4 2022, 5:14 PM · MITK (v2022.10)
kislinsk committed rMITKa6f1facedcb4: Delete obsolete resources (authored by kislinsk).
Delete obsolete resources
Oct 4 2022, 5:14 PM
kislinsk committed rMITKf1cbd59fd1e3: Merge branch 'bugfix/T29318-DeleteObsoleteResources' into develop (authored by kislinsk).
Merge branch 'bugfix/T29318-DeleteObsoleteResources' into develop
Oct 4 2022, 5:14 PM
kislinsk added a comment to T29318: Polish segmentation tool icons and cursors.

Pushed new branch to rMITK MITK: bugfix/T29318-DeleteObsoleteResources.

Oct 4 2022, 5:13 PM · MITK (v2022.10)
kislinsk reopened T29318: Polish segmentation tool icons and cursors as "Open".
Oct 4 2022, 5:12 PM · MITK (v2022.10)
kislinsk closed T29318: Polish segmentation tool icons and cursors as Resolved.
Oct 4 2022, 5:09 PM · MITK (v2022.10)
kislinsk added a comment to T29318: Polish segmentation tool icons and cursors.

Deleted branch from rMITK MITK: bugfix/T29318-SegmentationToolIconsAndCursors.

Oct 4 2022, 5:08 PM · MITK (v2022.10)
kislinsk committed rMITKa75def7c9049: Improve templates for segmentation tool icons and cursors (authored by kislinsk).
Improve templates for segmentation tool icons and cursors
Oct 4 2022, 5:08 PM
kislinsk committed rMITK752c7855db19: Use SVG icons and cursors for segmentation tools (authored by kislinsk).
Use SVG icons and cursors for segmentation tools
Oct 4 2022, 5:08 PM
kislinsk committed rMITKe7d267f68790: Merge remote-tracking branch 'origin/develop' into bugfix/T29318… (authored by kislinsk).
Merge remote-tracking branch 'origin/develop' into bugfix/T29318…
Oct 4 2022, 5:08 PM
kislinsk committed rMITK4846fc735537: Improve icon and cursor for Close segmentation tool (authored by kislinsk).
Improve icon and cursor for Close segmentation tool
Oct 4 2022, 5:08 PM
kislinsk committed rMITK57d5e382d392: Set new resource file names (authored by kislinsk).
Set new resource file names
Oct 4 2022, 5:08 PM
kislinsk committed rMITK1f6ec651fa54: Merge branch 'bugfix/T29318-SegmentationToolIconsAndCursors' into develop (authored by kislinsk).
Merge branch 'bugfix/T29318-SegmentationToolIconsAndCursors' into develop
Oct 4 2022, 5:08 PM
floca closed T29307: [Segmentation] Add a fill tool like e.g. GIMP or Photoshop has, a subtask of T29306: [Segmentation] Provide Close tool (behavior of old Fill tool), as Resolved.
Oct 4 2022, 4:40 PM · Request for Discussion, MITK (v2022.10)
floca closed T29307: [Segmentation] Add a fill tool like e.g. GIMP or Photoshop has as Resolved.
Oct 4 2022, 4:40 PM · Next Milestone, Request for Discussion, MITK (v2022.10)
floca committed rMITKe5f00365d075: T29078-Fix_erase_tool (authored by floca).
T29078-Fix_erase_tool
Oct 4 2022, 4:39 PM
floca committed rMITK815d672a3d46: Fixed typos (authored by floca).
Fixed typos
Oct 4 2022, 4:39 PM
floca committed rMITK484f6d6cb126: Preperation of new Close tool icons with placeholder. (authored by floca).
Preperation of new Close tool icons with placeholder.
Oct 4 2022, 4:39 PM
floca committed rMITK7014afcb419e: Added documentation of close tool (authored by floca).
Added documentation of close tool
Oct 4 2022, 4:39 PM
floca committed rMITK092abf8914f9: prevent crashes if the active label is not in the active label set (authored by floca).
prevent crashes if the active label is not in the active label set
Oct 4 2022, 4:39 PM
floca committed rMITK89566de2f706: BREAKING: Removed obsolete class SetRegionTool. (authored by floca).
BREAKING: Removed obsolete class SetRegionTool.
Oct 4 2022, 4:39 PM
floca committed rMITK307bd227e0aa: Added close tool (authored by floca).
Added close tool
Oct 4 2022, 4:39 PM
floca closed T29306: [Segmentation] Provide Close tool (behavior of old Fill tool) as Resolved by committing rMITK307bd227e0aa: Added close tool.
Oct 4 2022, 4:39 PM · Request for Discussion, MITK (v2022.10)
floca committed rMITK271839f8fd19: Reworked signature of GenerateFillImage to move the lock check logic (authored by floca).
Reworked signature of GenerateFillImage to move the lock check logic
Oct 4 2022, 4:39 PM
floca closed T29306: [Segmentation] Provide Close tool (behavior of old Fill tool), a subtask of T29132: [MultiLabel Segmentation] Define desired behavior of fill / erase tool, as Resolved.
Oct 4 2022, 4:39 PM · MITK (v2022.10)
floca committed rMITK43d1853aad0f: fixed compile error (authored by floca).
fixed compile error
Oct 4 2022, 4:39 PM
floca committed rMITK30bb7f9eca23: Addapted documentation to new fill tool behavior. (authored by floca).
Addapted documentation to new fill tool behavior.
Oct 4 2022, 4:39 PM
floca closed T28145: SetRegionTool does not work as expected (flood fill like) with concentric structures. as Resolved by committing rMITKdffc8d43c586: BREAKING: Switched FillRegion and EraseRegion to new FillRegionBase tool..
Oct 4 2022, 4:38 PM · MITK (v2022.10)
floca closed T28145: SetRegionTool does not work as expected (flood fill like) with concentric structures., a subtask of T29132: [MultiLabel Segmentation] Define desired behavior of fill / erase tool, as Resolved.
Oct 4 2022, 4:38 PM · MITK (v2022.10)
floca committed rMITKdffc8d43c586: BREAKING: Switched FillRegion and EraseRegion to new FillRegionBase tool. (authored by floca).
BREAKING: Switched FillRegion and EraseRegion to new FillRegionBase tool.
Oct 4 2022, 4:38 PM
floca closed T28763: [Multilabel Segmentation] Fill / Erase tool does not fully respect multiple labels, a subtask of T29132: [MultiLabel Segmentation] Define desired behavior of fill / erase tool, as Resolved.
Oct 4 2022, 4:38 PM · MITK (v2022.10)
floca closed T29078: [Segmentation] Erase tool has unclear edge cases as Resolved by committing rMITKdffc8d43c586: BREAKING: Switched FillRegion and EraseRegion to new FillRegionBase tool..
Oct 4 2022, 4:38 PM · Next Milestone, Checklist
floca committed rMITKd7cef5bfe428: Introduced new base tool for region filling (authored by floca).
Introduced new base tool for region filling
Oct 4 2022, 4:38 PM
floca closed T29078: [Segmentation] Erase tool has unclear edge cases, a subtask of T29132: [MultiLabel Segmentation] Define desired behavior of fill / erase tool, as Resolved.
Oct 4 2022, 4:38 PM · MITK (v2022.10)
floca closed T29078: [Segmentation] Erase tool has unclear edge cases, a subtask of T28479: [Segmentation] Rethink / reevaluate our existing segmentation tools / algorithms, as Resolved.
Oct 4 2022, 4:38 PM · MITK (v2024.06)
floca closed T29132: [MultiLabel Segmentation] Define desired behavior of fill / erase tool as Resolved by committing rMITKdffc8d43c586: BREAKING: Switched FillRegion and EraseRegion to new FillRegionBase tool..
Oct 4 2022, 4:38 PM · MITK (v2022.10)
floca closed T28763: [Multilabel Segmentation] Fill / Erase tool does not fully respect multiple labels, a subtask of T27807: [MultiLabel Segmentation] Inspection of module and plugin, as Resolved.
Oct 4 2022, 4:38 PM · MITK (v2024.06)
floca closed T28763: [Multilabel Segmentation] Fill / Erase tool does not fully respect multiple labels as Resolved by committing rMITKdffc8d43c586: BREAKING: Switched FillRegion and EraseRegion to new FillRegionBase tool..
Oct 4 2022, 4:38 PM · MITK (v2022.10), Request for Discussion
floca committed rMITK1c5f71f86d9a: Refactored IsPositionEventInsideImageRegion to be available via (authored by floca).
Refactored IsPositionEventInsideImageRegion to be available via
Oct 4 2022, 4:38 PM
floca added a revision to T28145: SetRegionTool does not work as expected (flood fill like) with concentric structures.: Unknown Object (Differential Revision).
Oct 4 2022, 4:15 PM · MITK (v2022.10)
floca added a revision to T28763: [Multilabel Segmentation] Fill / Erase tool does not fully respect multiple labels: Unknown Object (Differential Revision).
Oct 4 2022, 4:15 PM · MITK (v2022.10), Request for Discussion
floca added a revision to T29078: [Segmentation] Erase tool has unclear edge cases: Unknown Object (Differential Revision).
Oct 4 2022, 4:15 PM · Next Milestone, Checklist
floca added a revision to T29306: [Segmentation] Provide Close tool (behavior of old Fill tool): Unknown Object (Differential Revision).
Oct 4 2022, 4:15 PM · Request for Discussion, MITK (v2022.10)
floca added a revision to T29132: [MultiLabel Segmentation] Define desired behavior of fill / erase tool: Unknown Object (Differential Revision).
Oct 4 2022, 4:15 PM · MITK (v2022.10)
kalali added a comment to T26376: Segmentation plugin does not work correctly with the new mxn multi widget.

{D722} is a proposed change for checking the render window geometry and give the user a warning if the geometry is not aligned with the selected reference geometry.
The effect can be seen here:

Oct 4 2022, 4:08 PM · MITK (v2022.10)
kalali added a revision to T26376: Segmentation plugin does not work correctly with the new mxn multi widget: Restricted Differential Revision.
Oct 4 2022, 3:59 PM · MITK (v2022.10)
kalali closed Restricted Maniphest Task, a subtask of T28578: [mxn multi widget] Optimization of the mxn multi widget, as Resolved.
Oct 4 2022, 2:51 PM · MITK
kalali committed rMITKe4d0b1591a17: Use plane geometries as render window crosshair (authored by kalali).
Use plane geometries as render window crosshair
Oct 4 2022, 2:50 PM
kalali committed rMITKc04b1e53dd9a: Add option to change the crosshair gap size (authored by kalali).
Add option to change the crosshair gap size
Oct 4 2022, 2:50 PM
kalali committed rMITKb70655ebcbaf: Clean base renderer class (authored by kalali).
Clean base renderer class
Oct 4 2022, 2:50 PM
kalali committed rMITK02d6beef74fc: Add handling of plane nodes to mxnmultiwidget (authored by kalali).
Add handling of plane nodes to mxnmultiwidget
Oct 4 2022, 2:50 PM
kalali committed rMITK37d682b8b594: Use crosshair manager in RenderWindowWidget (authored by kalali).
Use crosshair manager in RenderWindowWidget
Oct 4 2022, 2:50 PM
kalali committed rMITK3af0e6c2bd75: Add helper class for slice navigation (authored by kalali).
Add helper class for slice navigation
Oct 4 2022, 2:49 PM
kalali committed rMITK528b8517192b: Add CrosshairManager for render window widgets (authored by kalali).
Add CrosshairManager for render window widgets
Oct 4 2022, 2:49 PM
kalali added a comment to T28578: [mxn multi widget] Optimization of the mxn multi widget.

I created a first working version, based on @s434n's branch (see above). I created an integration branch, made some changes and rebased everything to the latest develop.
Now the following changes, which are already merged into develop, are included, since the integration branch is based on e4d0b1591a17054b4c6792c235aa41345b842cb7:

Oct 4 2022, 2:45 PM · MITK
neher closed T29320: Make trk streamline flip possible on load as Resolved.
Oct 4 2022, 12:28 PM · MITK Diffusion
neher committed rMITKDIFFb0389a5ac38c: Merge branch 'T29320-TrkFlip' (authored by neher).
Merge branch 'T29320-TrkFlip'
Oct 4 2022, 11:58 AM
neher committed rMITKDIFFefeb7594ebdb: Added flip option on load (authored by neher).
Added flip option on load
Oct 4 2022, 11:57 AM
neher triaged T29320: Make trk streamline flip possible on load as Normal priority.
Oct 4 2022, 11:53 AM · MITK Diffusion
neher closed T28947: tract rad as Resolved.
Oct 4 2022, 11:52 AM · MITK Diffusion
neher committed rMITKDIFF81136d7bb0b2: undefined reference dcmtk dcmtract fix (authored by neher).
undefined reference dcmtk dcmtract fix
Oct 4 2022, 11:37 AM
neher renamed T29319: DCMTK undefined reference from DCMTK linker error to DCMTK undefined reference.
Oct 4 2022, 11:36 AM · MITK Diffusion
neher triaged T29319: DCMTK undefined reference as Normal priority.
Oct 4 2022, 11:35 AM · MITK Diffusion
kislinsk added a comment to T29318: Polish segmentation tool icons and cursors.

Pushed new branch to rMITK MITK: bugfix/T29318-SegmentationToolIconsAndCursors.

Oct 4 2022, 11:30 AM · MITK (v2022.10)
kislinsk triaged T29318: Polish segmentation tool icons and cursors as Normal priority.
Oct 4 2022, 11:26 AM · MITK (v2022.10)

Oct 3 2022

floca added a comment to T28767: 2D (multi-label) segmentation tools -> paint/wipe unusable for larger images.

Test the switch to TransferLabelContent. It makes it faster, but not fast enough for a good UX. I think the only scalable way is to only process the boundingbox region of the image that (potentialy) altered instead of always the whole image.

Oct 3 2022, 9:47 AM · Request for Discussion, MITK (v2022.10), Checklist
floca claimed T28767: 2D (multi-label) segmentation tools -> paint/wipe unusable for larger images.
Oct 3 2022, 9:35 AM · Request for Discussion, MITK (v2022.10), Checklist
floca added a comment to T28767: 2D (multi-label) segmentation tools -> paint/wipe unusable for larger images.

@isensee could you provide such a large image?
P.S.: not needed any more. found one.

Oct 3 2022, 9:35 AM · Request for Discussion, MITK (v2022.10), Checklist
floca moved T29306: [Segmentation] Provide Close tool (behavior of old Fill tool) from Segmentation to Cycle on the MITK (v2022.10) board.
Oct 3 2022, 9:33 AM · Request for Discussion, MITK (v2022.10)

Sep 30 2022

floca claimed T29306: [Segmentation] Provide Close tool (behavior of old Fill tool).
Sep 30 2022, 3:48 PM · Request for Discussion, MITK (v2022.10)
floca renamed T29306: [Segmentation] Provide Close tool (behavior of old Fill tool) from [Segmentation] Rename Fill tool to [Segmentation] Provide Close tool (behavior of old Fill tool).
Sep 30 2022, 3:48 PM · Request for Discussion, MITK (v2022.10)
kalali placed T29269: Check geometries in SliceNavigationController and BaseRenderer up for grabs.
Sep 30 2022, 10:12 AM · MITK (v2024.06)
kalali added a revision to T29289: Compare responsibilities of QmitkSliceNavigationController related classes: Unknown Object (Differential Revision).
Sep 30 2022, 10:12 AM · MITK
kalali added a revision to T29316: Rename QmitkSliderNavigatorWidget and clean variable names: Unknown Object (Differential Revision).
Sep 30 2022, 10:07 AM · MITK (v2022.10)

Sep 29 2022

kalali closed Restricted Maniphest Task, a subtask of T26496: [mxn multi widget] Re-initializations reset all render windows, as Resolved.
Sep 29 2022, 6:03 PM · MITK (v2022.10), Restricted Project
leamaya updated leamaya.
Sep 29 2022, 12:12 PM
leamaya updated leamaya.
Sep 29 2022, 12:12 PM

Sep 28 2022

floca moved T28145: SetRegionTool does not work as expected (flood fill like) with concentric structures. from Backlog to Cycle on the MITK (v2022.10) board.
Sep 28 2022, 10:37 AM · MITK (v2022.10)
floca claimed T28145: SetRegionTool does not work as expected (flood fill like) with concentric structures..
Sep 28 2022, 10:37 AM · MITK (v2022.10)
floca claimed T28763: [Multilabel Segmentation] Fill / Erase tool does not fully respect multiple labels.
Sep 28 2022, 10:36 AM · MITK (v2022.10), Request for Discussion
floca claimed T29132: [MultiLabel Segmentation] Define desired behavior of fill / erase tool.
Sep 28 2022, 10:35 AM · MITK (v2022.10)
floca moved T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep from Cycle to Segmentation on the MITK (v2022.10) board.
Sep 28 2022, 10:34 AM · MITK (v2024.06)
floca moved T28499: Refactor/rewrite RegionGrowing3D tool from Cycle to Segmentation on the MITK (v2022.10) board.
Sep 28 2022, 10:34 AM · MITK (v2024.06)
floca moved T28499: Refactor/rewrite RegionGrowing3D tool from Segmentation to Cycle on the MITK (v2022.10) board.
Sep 28 2022, 10:33 AM · MITK (v2024.06)
floca moved T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep from Segmentation to Cycle on the MITK (v2022.10) board.
Sep 28 2022, 10:33 AM · MITK (v2024.06)
floca moved T29307: [Segmentation] Add a fill tool like e.g. GIMP or Photoshop has from Backlog to Cycle on the MITK (v2022.10) board.
Sep 28 2022, 10:33 AM · Next Milestone, Request for Discussion, MITK (v2022.10)
floca added a comment to T24398: Dicom plugin: Retrieve does not work.

Thank you 🙏

Sep 28 2022, 9:43 AM · MITK (v2024.06)
kislinsk added a comment to T29317: Clean up DICOM Browser plugin.

Here's the first batch of clean-up action. Needs to be continued!

Sep 28 2022, 9:40 AM · MITK (v2024.06)
kislinsk triaged T29317: Clean up DICOM Browser plugin as Normal priority.
Sep 28 2022, 9:37 AM · MITK (v2024.06)
kislinsk added a comment to T24398: Dicom plugin: Retrieve does not work.

Our side or also the CTK part.

Hm, lets put it as known issue and discuss its priority when we plan the spring release.

Sep 28 2022, 9:35 AM · MITK (v2024.06)
s349i updated the task description for T28798: [Segmentation][MultiLabel][Utilities] UI is inconsistent / unstable.
Sep 28 2022, 9:16 AM · MITK (v2024.06), Checklist
floca added a revision to T28145: SetRegionTool does not work as expected (flood fill like) with concentric structures.: Unknown Object (Differential Revision).
Sep 28 2022, 9:15 AM · MITK (v2022.10)
floca added a revision to T29078: [Segmentation] Erase tool has unclear edge cases: Unknown Object (Differential Revision).
Sep 28 2022, 9:15 AM · Next Milestone, Checklist
floca added a revision to T29132: [MultiLabel Segmentation] Define desired behavior of fill / erase tool: Unknown Object (Differential Revision).
Sep 28 2022, 9:15 AM · MITK (v2022.10)
floca added a revision to T28763: [Multilabel Segmentation] Fill / Erase tool does not fully respect multiple labels: Unknown Object (Differential Revision).
Sep 28 2022, 9:15 AM · MITK (v2022.10), Request for Discussion

Sep 27 2022

floca added a comment to T24398: Dicom plugin: Retrieve does not work.

thank you for looking into that matter.

Sep 27 2022, 5:38 PM · MITK (v2024.06)