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Jun 16 2023

kislinsk triaged T29633: Upgrade VTK dependency from v9.1.0 to v9.2.6 as Normal priority.
Jun 16 2023, 10:47 AM · MITK
kislinsk added a comment to T29626: Upgrade third party dependencies.

Deleted branch from rMITK MITK: bugfix/T29626-UpgradeThirdPartyDependencies.

Jun 16 2023, 8:45 AM · MITK
kislinsk closed T29626: Upgrade third party dependencies as Resolved by committing rMITK109ffce63047: Upgrade third-party dependencies.
Jun 16 2023, 8:45 AM · MITK

Jun 15 2023

kompan closed T27142: Unit test for average baseline signal, a subtask of T22085: Perfusion Conversion to Concentration: Average Baseline signal, as Resolved.
Jun 15 2023, 12:29 PM · Restricted Project, MITK
kompan closed T27142: Unit test for average baseline signal as Resolved.

This task is done as part of task https://phabricator.mitk.org/T27860.

Jun 15 2023, 12:29 PM · MITK, Restricted Project
kislinsk moved T29630: Command-line app for voxelizing contour sets / RTSTRUCTs in MITK from Backlog to MITK Meeting on the Request for Discussion board.
Jun 15 2023, 8:52 AM · Request for Discussion, MITK
kislinsk moved T29631: Integration of an updated Feature Branch from Backlog to MITK Meeting on the Request for Discussion board.
Jun 15 2023, 8:52 AM · MITK
kislinsk added a comment to T29631: Integration of an updated Feature Branch.

Didn't find any "critical" style issues. It is a single commit, right? rMITKc8283d2c7c3f: Smaller Bugfixes
You may want to search and replace "[Bb]oarder" with "[Bb]order", though, as I guess you intended to refer to "Rand" instead of "Untermieter". :)

Jun 15 2023, 8:51 AM · MITK

Jun 14 2023

goetzm triaged T29631: Integration of an updated Feature Branch as Normal priority.
Jun 14 2023, 3:45 PM · MITK
kompan added a comment to T26840: Mission Homepage Reorganization .

Deleted branch from rMITK MITK: bugfix/T26840-MitkHomepageReorganization-TopLevel-integrationBranch.

Jun 14 2023, 9:51 AM · MITK
kompan added a comment to T29620: Check if GenericFitMiniApp supports the needed model.

The formula for the 23Na-MR data analysis is:

Jun 14 2023, 9:07 AM · Missing Info, MITK, Restricted Project, Restricted Project

Jun 13 2023

kislinsk updated the task description for T29630: Command-line app for voxelizing contour sets / RTSTRUCTs in MITK.
Jun 13 2023, 11:08 AM · Request for Discussion, MITK
kislinsk triaged T29630: Command-line app for voxelizing contour sets / RTSTRUCTs in MITK as Wishlist priority.
Jun 13 2023, 11:07 AM · Request for Discussion, MITK
floca added a comment to T29620: Check if GenericFitMiniApp supports the needed model.

What is the status here?

Jun 13 2023, 10:59 AM · Missing Info, MITK, Restricted Project, Restricted Project
kislinsk added a revision to T29626: Upgrade third party dependencies: Restricted Differential Revision.
Jun 13 2023, 10:49 AM · MITK

Jun 12 2023

kislinsk closed T29627: cpp mircoservoces raise doc warnings as Resolved.
Jun 12 2023, 4:20 PM · MITK
kislinsk added a comment to T29627: cpp mircoservoces raise doc warnings.

Deleted branch from rMITK MITK: bugfix/T29627-FixDoxygenWarnings.

Jun 12 2023, 4:20 PM · MITK
kislinsk added a comment to T29627: cpp mircoservoces raise doc warnings.

Pushed new branch to rMITK MITK: bugfix/T29627-FixDoxygenWarnings.

Jun 12 2023, 4:18 PM · MITK
kislinsk added a comment to T28578: [mxn multi widget] Optimization of the mxn multi widget.

Deleted branch from rMITK MITK: feature/T28578-Test-MxN-installer.

Jun 12 2023, 11:15 AM · Moved to git.dkfz.de, MITK
kislinsk claimed T29627: cpp mircoservoces raise doc warnings.

What's your doxygen version?

Jun 12 2023, 7:59 AM · MITK

Jun 6 2023

neher triaged T29627: cpp mircoservoces raise doc warnings as Normal priority.
Jun 6 2023, 9:05 AM · MITK

Jun 2 2023

kislinsk updated the task description for T29626: Upgrade third party dependencies.
Jun 2 2023, 4:51 PM · MITK
kislinsk added a comment to T29626: Upgrade third party dependencies.

Pushed new branch to rMITK MITK: bugfix/T29626-UpgradeThirdPartyDependencies.

Jun 2 2023, 4:50 PM · MITK
kislinsk updated the task description for T29626: Upgrade third party dependencies.
Jun 2 2023, 4:47 PM · MITK
kislinsk triaged T29626: Upgrade third party dependencies as Normal priority.
Jun 2 2023, 4:47 PM · MITK

May 31 2023

kislinsk closed T29603: Warn (as error) in Visual Studio for unreferenced parameters and variables to match our GCC/Clang settings as Wontfix.
May 31 2023, 3:16 PM · MITK
kislinsk closed T29625: Try to automatically find OpenSSL binaries when link libraries have been found already as Resolved.
May 31 2023, 2:54 PM · MITK
kislinsk added a comment to T29625: Try to automatically find OpenSSL binaries when link libraries have been found already.

Deleted branch from rMITK MITK: feature/T29625-FindOpenSSLBinaries.

May 31 2023, 2:53 PM · MITK
kislinsk added a comment to T29625: Try to automatically find OpenSSL binaries when link libraries have been found already.

Pushed new branch to rMITK MITK: feature/T29625-FindOpenSSLBinaries.

May 31 2023, 2:43 PM · MITK
kislinsk triaged T29625: Try to automatically find OpenSSL binaries when link libraries have been found already as Normal priority.
May 31 2023, 2:41 PM · MITK

May 30 2023

kislinsk closed T29623: Convert mbilog utility module to plain MitkLog module as Resolved.
May 30 2023, 10:41 AM · MITK
kislinsk added a comment to T29623: Convert mbilog utility module to plain MitkLog module.

Deleted branch from rMITK MITK: bugfix/T29623-mbilog-MitkLog.

May 30 2023, 10:41 AM · MITK

May 28 2023

kislinsk added a revision to T29623: Convert mbilog utility module to plain MitkLog module: Restricted Differential Revision.
May 28 2023, 9:43 PM · MITK
kislinsk added a comment to T29623: Convert mbilog utility module to plain MitkLog module.

Pushed new branch to rMITK MITK: bugfix/T29623-mbilog-MitkLog.

May 28 2023, 9:31 PM · MITK
kislinsk merged task T28727: MITK logging window is still called "mbilog" into T29623: Convert mbilog utility module to plain MitkLog module.
May 28 2023, 9:25 PM · MITK
kislinsk merged T28727: MITK logging window is still called "mbilog" into T29623: Convert mbilog utility module to plain MitkLog module.
May 28 2023, 9:25 PM · MITK
kislinsk triaged T29623: Convert mbilog utility module to plain MitkLog module as Normal priority.
May 28 2023, 9:25 PM · MITK

May 25 2023

s434n closed T26555: [mxn multi widget] Provide different default layouts, a subtask of T28578: [mxn multi widget] Optimization of the mxn multi widget, as Resolved.
May 25 2023, 4:33 PM · Moved to git.dkfz.de, MITK
s434n closed T26555: [mxn multi widget] Provide different default layouts as Resolved.

During our testing event there were no suggestions for new layouts people would like, so this task will be closed and any layouts that are requested in the future can be added on demand.

May 25 2023, 4:33 PM · MITK

May 24 2023

floca added a project to T29620: Check if GenericFitMiniApp supports the needed model: Missing Info.

please ask tanja before I say something wrong.

May 24 2023, 7:31 PM · Missing Info, MITK, Restricted Project, Restricted Project
s434n added a comment to T29620: Check if GenericFitMiniApp supports the needed model.

What exactly was the model again? Just an exponential decay?

May 24 2023, 5:54 PM · Missing Info, MITK, Restricted Project, Restricted Project
floca triaged T29620: Check if GenericFitMiniApp supports the needed model as Normal priority.
May 24 2023, 5:47 PM · Missing Info, MITK, Restricted Project, Restricted Project
a178n triaged T29615: [Segmentation] Multi-threading support for compute heavy tools as Normal priority.
May 24 2023, 1:47 PM · Moved to git.dkfz.de, MITK
a178n closed T29614: [Segmentation] "Ignore Label Lock" wipes off any label present in it as Invalid.

Ya, you are right. I didn't think it through. A Group cannot have overlapping labels. Hence, when asked to Ignore Label lock, would mean it has to go when Otsu-generated labels are confirmed.

May 24 2023, 1:36 PM · MITK
s434n added a comment to T29608: [Segmentation Utils] Workbench crashes for Morphological operations.

This is more of the stack trace:

MitkCore.dll!mitk::ImageDataItem::GetData() Zeile 131
MitkCore.dll!mitk::Image::Image(const mitk::Image & other) Zeile 83
MitkMultilabel.dll!mitk::LabelSetImage::LabelSetImage(const mitk::LabelSetImage & other) Zeile 75
MitkMultilabel.dll!mitk::LabelSetImage::InternalClone() Zeile 494
MitkMultilabel.dll!mitk::LabelSetImage::Clone() Zeile 33
MitkSegmentationUI.dll!ModifyLabelProcessing<3>(mitk::LabelSetImage * labelSetImage, itk::SmartPointer<mitk::SurfaceInterpolationController> surfaceInterpolator, unsigned int timePoint) Zeile 203
MitkSegmentationUI.dll!QmitkSlicesInterpolator::OnModifyLabelChanged(const itk::Object * caller, const itk::EventObject & __formal) Zeile 1915
May 24 2023, 10:35 AM · MITK (v2023.12)
floca added a comment to T29608: [Segmentation Utils] Workbench crashes for Morphological operations.

No that should not happen. What is the rest of the stack trace? Does it fail to clone a layer image or the LabelSetImage itself?

May 24 2023, 5:30 AM · MITK (v2023.12)

May 23 2023

floca added a comment to T29614: [Segmentation] "Ignore Label Lock" wipes off any label present in it.

I don't understand the propblem. It behaves like it should. If you ignore locks and transfer all otsu labels, all other labels of a group will be wiped (but still the label exist, as tools do not delete label instances but only pixels), because otsu covers all pixels.

May 23 2023, 5:50 PM · MITK
a178n updated the task description for T29614: [Segmentation] "Ignore Label Lock" wipes off any label present in it.
May 23 2023, 2:21 PM · MITK
a178n created T29614: [Segmentation] "Ignore Label Lock" wipes off any label present in it.
May 23 2023, 2:20 PM · MITK
floca triaged T29611: [REG] Add MatchPoint slabbedHead and HeadNeck algorithms as Normal priority.
May 23 2023, 11:02 AM · Noteworthy, MITK

May 22 2023

s434n added a comment to T29608: [Segmentation Utils] Workbench crashes for Morphological operations.

Can reproduce. When debugging, the error is caused while trying to clone a LabelSetImage. While creating a new mitk::Image from a reference, it tries to get:

ImageDataItemPointer volume = other.GetVolumeData(0);
this->SetVolume(volume->GetData(), 0);

but volume is nullptr.
I'm not sure if this just needs a nullptr safeguard (and eventually an additional default initialization?) or if this should not be able to happen in the first place.

May 22 2023, 10:26 AM · MITK (v2023.12)
a178n updated the task description for T29608: [Segmentation Utils] Workbench crashes for Morphological operations.
May 22 2023, 10:26 AM · MITK (v2023.12)
a178n triaged T29608: [Segmentation Utils] Workbench crashes for Morphological operations as Unbreak Now! priority.
May 22 2023, 10:20 AM · MITK (v2023.12)
a178n created T29608: [Segmentation Utils] Workbench crashes for Morphological operations.
May 22 2023, 10:18 AM · MITK (v2023.12)

May 21 2023

floca added a comment to T29606: [REG] Add MiniApp for MatchPoint base mapping.

Pushed new branch to rMITK MITK: feature/T29606-Add_MatchPoint_MiniApps.

May 21 2023, 11:35 AM · Noteworthy, MITK
floca added a revision to T29607: [REG] Add MiniApp for MatchPoint base matching/registration: Restricted Differential Revision.
May 21 2023, 11:35 AM · MatchPoint, Noteworthy, MITK
floca added a revision to T29606: [REG] Add MiniApp for MatchPoint base mapping: Restricted Differential Revision.
May 21 2023, 11:35 AM · Noteworthy, MITK
floca triaged T29607: [REG] Add MiniApp for MatchPoint base matching/registration as Normal priority.
May 21 2023, 11:28 AM · MatchPoint, Noteworthy, MITK
floca triaged T29606: [REG] Add MiniApp for MatchPoint base mapping as Normal priority.
May 21 2023, 11:27 AM · Noteworthy, MITK

May 19 2023

floca added a comment to T29000: [Otsu/Watershed Bug] Time points skipped while browsing segmentation Preview.

🙏

May 19 2023, 9:08 AM · Missing Info, MITK
a178n closed T29000: [Otsu/Watershed Bug] Time points skipped while browsing segmentation Preview as Resolved.

Tested on the latest MITK 2023.04 release installer for Windows 10.
Problem doesn't exist anymore. Fixed.

May 19 2023, 8:59 AM · Missing Info, MITK

May 17 2023

kislinsk removed a project from T24540: DICOMReader module does not support Philips US 3D files on its "own": Auto-closed.
May 17 2023, 6:00 PM · Moved to git.dkfz.de, Restricted Project, MITK
kislinsk removed a project from T23774: Implement helper to correctly (DICOM conformal) parameterize images (or other BaseData derived classes): Auto-closed.
May 17 2023, 6:00 PM · Moved to git.dkfz.de, MITK
kislinsk removed a project from T25307: Clean up remove deprecated dicom properties: Auto-closed.
May 17 2023, 6:00 PM · Moved to git.dkfz.de, MITK
kislinsk removed a project from T26248: [Image statistics] Implement different view modes: Auto-closed.
May 17 2023, 6:00 PM · MITK
kislinsk removed a project from T25496: Visualize RTDOSE correctly: Auto-closed.
May 17 2023, 6:00 PM · MITK
kislinsk removed a project from T22322: Changing a renderer-specific property list of a data node does not modify the data node: Auto-closed.
May 17 2023, 6:00 PM · Moved to git.dkfz.de, MITK
kislinsk removed a project from T19711: Correct handling of RT-Properties in nodes and data: Auto-closed.
May 17 2023, 6:00 PM · Moved to git.dkfz.de, Bugzilla, MITK
kislinsk removed a project from T23811: PatientViewPlugin ++: Auto-closed.
May 17 2023, 6:00 PM · Moved to git.dkfz.de, Request for Discussion, MITK
kislinsk removed a project from T24729: GetPropertyKeys() in DataNode should also return propertyKeys of BaseData: Auto-closed.
May 17 2023, 6:00 PM · MITK (v2024.12)
kislinsk removed a project from T27568: US 2D image cannot be read: invalid tilt information: Auto-closed.
May 17 2023, 6:00 PM · Moved to git.dkfz.de, Restricted Project, MITK
kislinsk removed a project from T26473: Optimize QmitkChartWidget interface: Auto-closed.
May 17 2023, 6:00 PM · Moved to git.dkfz.de, MITK
kislinsk removed a project from T27570: US DICOM images are read as 3D volume: Auto-closed.
May 17 2023, 6:00 PM · Auto-closed, Missing Info, Restricted Project, MITK
kislinsk removed a project from T28150: [RT] Refactor RT Dose reader: Auto-closed.
May 17 2023, 6:00 PM · Moved to git.dkfz.de, MITK
kislinsk removed a project from T28192: [Registration] Auto selection (and listening) in MatchPoint views: Auto-closed.
May 17 2023, 6:00 PM · Moved to git.dkfz.de, MITK
kislinsk removed a project from T29000: [Otsu/Watershed Bug] Time points skipped while browsing segmentation Preview: Auto-closed.
May 17 2023, 6:00 PM · Missing Info, MITK
kislinsk removed a project from T26853: IGT tutorial step 1 and step 2 do not start: Auto-closed.
May 17 2023, 6:00 PM · IGT, MITK
floca reopened T28150: [RT] Refactor RT Dose reader as "Open".
May 17 2023, 5:20 PM · Moved to git.dkfz.de, MITK
floca edited projects for T28156: [Segmentation] Fix timestep / timepoint types, added: Next Milestone; removed Auto-closed.
May 17 2023, 5:19 PM · Moved to git.dkfz.de, MITK (v2024.12)
floca reopened T28156: [Segmentation] Fix timestep / timepoint types as "Open".
May 17 2023, 5:19 PM · Moved to git.dkfz.de, MITK (v2024.12)
floca reopened T28192: [Registration] Auto selection (and listening) in MatchPoint views as "Open".
May 17 2023, 5:18 PM · Moved to git.dkfz.de, MITK
floca reopened T24729: GetPropertyKeys() in DataNode should also return propertyKeys of BaseData as "Open".
May 17 2023, 5:13 PM · MITK (v2024.12)
floca reopened T26473: Optimize QmitkChartWidget interface as "Open".
May 17 2023, 5:08 PM · Moved to git.dkfz.de, MITK
floca reopened T27568: US 2D image cannot be read: invalid tilt information as "Open".
May 17 2023, 5:07 PM · Moved to git.dkfz.de, Restricted Project, MITK
floca reopened T27568: US 2D image cannot be read: invalid tilt information, a subtask of T27554: Handling of 2D and 2D+t sonographic (US) images, as Open.
May 17 2023, 5:07 PM · Restricted Project, MITK
floca reopened T27570: US DICOM images are read as 3D volume, a subtask of T27554: Handling of 2D and 2D+t sonographic (US) images, as Open.
May 17 2023, 5:03 PM · Restricted Project, MITK
floca reopened T27570: US DICOM images are read as 3D volume as "Open".
May 17 2023, 5:03 PM · Auto-closed, Missing Info, Restricted Project, MITK
floca reopened T24540: DICOMReader module does not support Philips US 3D files on its "own" as "Open".
May 17 2023, 5:03 PM · Moved to git.dkfz.de, Restricted Project, MITK
floca reopened T25496: Visualize RTDOSE correctly as "Open".

As we now have preferences at the module level that can be done even in a better way. Now the mapper can set the default node settings for rendering if not already done. No need to have it handled by the reading code anymore.

May 17 2023, 5:02 PM · MITK
floca reopened T25307: Clean up remove deprecated dicom properties as "Open".
May 17 2023, 4:58 PM · Moved to git.dkfz.de, MITK
floca reopened T19711: Correct handling of RT-Properties in nodes and data as "Open".
May 17 2023, 4:57 PM · Moved to git.dkfz.de, Bugzilla, MITK
floca reopened T19711: Correct handling of RT-Properties in nodes and data, a subtask of T23746: MITK and DICOM (realization), as Open.
May 17 2023, 4:57 PM · MITK
floca reopened T22322: Changing a renderer-specific property list of a data node does not modify the data node as "Open".
May 17 2023, 4:56 PM · Moved to git.dkfz.de, MITK
floca reopened T23811: PatientViewPlugin ++, a subtask of T23754: DataStorage/Relationship clean up/refactoring, as Open.
May 17 2023, 4:55 PM · MITK
floca reopened T23811: PatientViewPlugin ++ as "Open".

I reeopened because I would like to llok into the feature branch at least and see what might be of interest:

May 17 2023, 4:55 PM · Moved to git.dkfz.de, Request for Discussion, MITK
floca reopened T29000: [Otsu/Watershed Bug] Time points skipped while browsing segmentation Preview as "Open".
May 17 2023, 4:40 PM · Missing Info, MITK
floca added a comment to T29000: [Otsu/Watershed Bug] Time points skipped while browsing segmentation Preview.

@a178n Could you verify if the problem still exist or if it is fixed?

May 17 2023, 4:38 PM · Missing Info, MITK
kislinsk closed T26413: Nifti2 support as Wontfix.

Hi there! 🙂

May 17 2023, 3:01 PM · Auto-closed, Missing Info, MITK
kislinsk closed T27570: US DICOM images are read as 3D volume as Wontfix.

Hi there! 🙂

May 17 2023, 3:01 PM · Auto-closed, Missing Info, Restricted Project, MITK
kislinsk closed T27570: US DICOM images are read as 3D volume, a subtask of T27554: Handling of 2D and 2D+t sonographic (US) images, as Wontfix.
May 17 2023, 3:01 PM · Restricted Project, MITK