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Dec 21 2020

kalali updated the task description for T28111: Extend "Checkliste MultiLabel Segmentierung – 2D Segmentierung".

Dec 21 2020, 2:58 PM · MITK (v2022.04)

kalali added a comment to T28111: Extend "Checkliste MultiLabel Segmentierung – 2D Segmentierung".

I created the document and added content to explicitly test

segmentation on a 3D image
3D segmentation (static) on a 4D image
4D segmentation (dynamic) on a 4D image
segmenting with different labels / on different layers

Dec 21 2020, 2:58 PM · MITK (v2022.04)

kalali reopened T27800: [Segmentation] Live Wire crashes with 4D image and static segmentation as "Open".

Reopened this because this error still occurs / occurs again. This should be investigated with the work of T28118: Refactoring of SegTool2D.

Dec 21 2020, 1:57 PM · MITK (v2021.02)

kalali reopened T27800: [Segmentation] Live Wire crashes with 4D image and static segmentation, a subtask of T27507: Check the current behavior of the segmentation tools according static and dynamic 4D segmentation, as Open.

Dec 21 2020, 1:57 PM · MITK (v2021.10), Missing Info, Restricted Project

kalali added a comment to T28113: [Segmentation] LiveWire tool confirms segmentation upon tool or label change.

I just found out that the Checklists also states the following:

Deaktiveren des Live Wire Tools
  Tool Icon verschwindet vom Mouse Cursor
  Die gelben Konturen werden weiterhin angezeigt, können aber nicht mehr bearbeitet werden

Dec 21 2020, 12:52 PM · Request for Discussion, MITK (v2021.10)

gaoh triaged T28127: Reopen segmentation in MITK as High priority.

Dec 21 2020, 9:57 AM · MITK (v2021.02), Restricted Project, Kaapana (internal)

kalali added a comment to T28110: Extend checklists for multilabel segmentation view.

Btw: I never found any multilabel segmentation checklists. Did I miss something? For this meta-task and its sub-tasks I will create all the required checklists.

Dec 21 2020, 8:57 AM · MITK (v2022.04)

kislinsk closed T28126: 2020 Week 52 (Late December) as Resolved.

Dec 21 2020, 6:52 AM · MITK

kislinsk edited the content of Changelog.

Dec 21 2020, 6:52 AM · MITK

kislinsk added a comment to T28126: 2020 Week 52 (Late December).

Deleted branch release/T28126-2020-Week-52.

Dec 21 2020, 6:51 AM · MITK

kislinsk committed rMITK5dc9bf8b39f9: Merge branch 'master' into develop (authored by kislinsk).

Merge branch 'master' into develop

Dec 21 2020, 6:51 AM

kislinsk committed rMITKbd9ce02f928c: 2020 Week 52 (Late December) (authored by kislinsk).

2020 Week 52 (Late December)

Dec 21 2020, 6:50 AM

kislinsk edited the content of 2020 Week 52 (Late December).

Dec 21 2020, 6:44 AM

kislinsk added a comment to T28126: 2020 Week 52 (Late December).

Pushed new branch release/T28126-2020-Week-52.

Dec 21 2020, 5:16 AM · MITK

kislinsk triaged T28126: 2020 Week 52 (Late December) as Normal priority.

Dec 21 2020, 5:14 AM · MITK

kislinsk created an object: 2020 Week 52 (Late December).

Dec 21 2020, 5:13 AM

Dec 20 2020

eisenman closed T28125: challangeR Release v1.0.0 as Resolved.

Dec 20 2020, 9:34 PM · challengeR (v1.0)

eisenman moved T28125: challangeR Release v1.0.0 from In Progress to Done on the challengeR (v1.0) board.

Dec 20 2020, 9:34 PM · challengeR (v1.0)

eisenman closed T27396: Represent single-task challenge as multi-task challenge with one task as Resolved.

Dec 20 2020, 9:34 PM · challengeR (v1.0)

eisenman closed T27325: Plot titles in rankingHeatmap missing in multi task report as Resolved.

Dec 20 2020, 9:34 PM · challengeR (v1.0)

eisenman closed T27404: Fix the 2.1 section title format of the report as Resolved.

Dec 20 2020, 9:34 PM · challengeR (v1.0)

eisenman closed T27408: Description of cluster analysis contains unnecessary symbol as Resolved.

Dec 20 2020, 9:33 PM · challengeR (v1.0)

eisenman closed T27410: Correct description of variability of achieved rankings across tasks as Resolved.

Dec 20 2020, 9:33 PM · challengeR (v1.0)

eisenman closed T27281: Implement tests for ranking method "rank-then-aggregate" as Resolved.

Dec 20 2020, 9:33 PM · challengeR (v1.0)

eisenman closed T27412: Description of variability of achieved rankings across tasks is missing in short report as Resolved.

Dec 20 2020, 9:33 PM · challengeR (v1.0)

eisenman closed T27316: Aggregate-than-rank does not throw an error when an invalid NA treatment option is specified as Resolved.

Dec 20 2020, 9:33 PM · challengeR (v1.0)

eisenman closed T27302: Add sections to the readme as Resolved.

Dec 20 2020, 9:33 PM · challengeR (v1.0)

eisenman closed T27237: Implement tests for ranking method "aggregate-then-rank" as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27301: Add on boarding tutorial as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27244: Implement tests for the "challenge" class as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27236: Set up test infrastructure as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27407: Warnings are shown in multi-task challenge report for violin plot as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27656: make sure data set is data.frame as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27411: Improve labels in cluster dendrogram as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27327: warning in docx report as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27449: Consistent handling of plots created for multi-task data sets as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27287: is warning given if na.treat unspecified in rank-first and obligatory otherwise as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27694: Fix failing unit tests as Resolved.

Dec 20 2020, 9:32 PM · challengeR (v1.0)

eisenman closed T27253: Notify user when multi-task data set is interpreted as single-task data set as Resolved.

Dec 20 2020, 9:31 PM · challengeR (v1.0)

eisenman closed T27385: Variables holding the aggregated value are named differently for single- and multi-task challenges as Resolved.

Dec 20 2020, 9:31 PM · challengeR (v1.0)

eisenman closed T27657: When missing algorithm performances are added as NAs, task is also NA as Resolved.

Dec 20 2020, 9:31 PM · challengeR (v1.0)

eisenman closed T27715: Specify minimum required versions of dependencies as Resolved.

Dec 20 2020, 9:31 PM · challengeR (v1.0)

eisenman closed T27252: Multiple cases per algorithm are not detected when missing data was added before as Resolved.

Dec 20 2020, 9:30 PM · challengeR (v1.0)

eisenman closed T27740: Add missing imports as Resolved.

Dec 20 2020, 9:30 PM · challengeR (v1.0)

eisenman closed T27658: LaTeX Warning: There were undefined references as Resolved.

Dec 20 2020, 9:30 PM · challengeR (v1.0)

eisenman closed T27475: Legend of blob plot has missing legend title and algorithms as Resolved.

Dec 20 2020, 9:30 PM · challengeR (v1.0)

eisenman closed T27474: Legend of line plot has missing legend title and algorithm as Resolved.

Dec 20 2020, 9:30 PM · challengeR (v1.0)

eisenman closed T27677: Update text in reports (feedback from Lena) as Resolved.

Dec 20 2020, 9:30 PM · challengeR (v1.0)

eisenman closed T27769: Top x performing algorithms are not mentioned in the reports anymore as Resolved.

Dec 20 2020, 9:30 PM · challengeR (v1.0)

eisenman closed T27338: Report contains misleading information on missing values as Resolved.

Dec 20 2020, 9:30 PM · challengeR (v1.0)

eisenman closed T27773: package dependencies as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27294: add multiple figure output formats in report with option clean=TRUE as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27337: Report contains wrong ranking method when rank-then-aggregate is used as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27452: Provide plot function for dendrogram as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27714: Report contains weird R output as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27453: Create complete network plot in its function as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27776: Failing unit tests for subset of tasks as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27685: changes in subset() as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27777: Failing unit tests for challenge as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27774: wrong text in report on algorithm subsets as Resolved.

Dec 20 2020, 9:28 PM · challengeR (v1.0)

eisenman closed T27447: significanceMap function raises warning about deprecated function call as Resolved.

Dec 20 2020, 9:27 PM · challengeR (v1.0)

eisenman closed T27770: Inconsistency in report description as Resolved.

Dec 20 2020, 9:27 PM · challengeR (v1.0)

eisenman closed T27282: Implement tests for ranking method "test-then-rank" based on Wilcoxon signed rank test as Resolved.

Dec 20 2020, 9:27 PM · challengeR (v1.0)

eisenman closed T27686: tutorial can be added as vignette to embed it in the package as Resolved.

Dec 20 2020, 9:27 PM · challengeR (v1.0)

eisenman closed T27450: Consistent use of attribute indicating whether small metric values lead to a better rank as Resolved.

Dec 20 2020, 9:26 PM · challengeR (v1.0)

eisenman closed T27804: Message text from violin plot is cut off in the PDF report as Resolved.

Dec 20 2020, 9:26 PM · challengeR (v1.0)

eisenman closed T27793: Plot titles are missing in some line plots as Resolved.

Dec 20 2020, 9:26 PM · challengeR (v1.0)

eisenman closed T27778: turn off networks as Resolved.

Dec 20 2020, 9:26 PM · challengeR (v1.0)

eisenman closed T27456: Extraction of task subset from (bootstrap) ranking does not raise an error for invalid task name as Resolved.

Dec 20 2020, 9:26 PM · challengeR (v1.0)

eisenman closed T27794: Stacked frequency plots should switch to single page layout as Resolved.

Dec 20 2020, 9:26 PM · challengeR (v1.0)

eisenman closed T27802: Revise signature of function testThenRank as Resolved.

Dec 20 2020, 9:26 PM · challengeR (v1.0)

eisenman closed T27922: Remove network plot from report overview as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T27278: Writing documentation for main functions as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T27929: Provide documentation for plot functions as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T27930: Revise examples given in the vignettes as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T27996: Restructure troubleshooting section as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T27420: report text as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T28055: respect color scheme also for box plots as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T28033: +scale_* seems to not work in combination with ggList objects as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T27963: Task names printed as R output in Sec. 3.1 of multi-task report as Resolved.

Dec 20 2020, 9:25 PM · challengeR (v1.0)

eisenman closed T27360: compatibility with R4.0.0 as Resolved.

Also successfully checked for Ubuntu 18.04 and R version 4.0.3.

Dec 20 2020, 9:24 PM · challengeR (v1.0)

eisenman closed T27707: na.treat obligatory for report as Resolved.

Dec 20 2020, 9:23 PM · challengeR (v1.0)

eisenman closed T27241: Readme improvements as Resolved.

Dec 20 2020, 9:23 PM · challengeR (v1.0)

eisenman closed T27915: Podium plot shrinks for long algorithm names as Resolved.

Dec 20 2020, 9:22 PM · challengeR (v1.0)

eisenman closed T27748: Decide on limit for algorithms in plot legends as Resolved.

Dec 20 2020, 9:22 PM · challengeR (v1.0)

eisenman closed T27943: Plot function stability() raises error when used with default values as Resolved.

Dec 20 2020, 9:22 PM · challengeR (v1.0)

eisenman closed T28085: Report generation is broken as Resolved.

Dec 20 2020, 9:22 PM · challengeR (v1.0)

eisenman closed T27971: Provide code for podium plot in vignette "Visualizations" as Resolved.

Dec 20 2020, 9:22 PM · challengeR (v1.0)

eisenman closed T27292: Fix toolkit authors as Resolved.

Dec 20 2020, 9:22 PM · challengeR (v1.0)

eisenman closed T28112: colors in box plots multitask not consistent as Resolved.

Dec 20 2020, 9:22 PM · challengeR (v1.0)

eisenman closed T27291: update license file as Resolved.

Dec 20 2020, 9:22 PM · challengeR (v1.0)

eisenman closed T27998: Interpretation of consensus ranking values needs further explanation as Resolved.

Dec 20 2020, 9:21 PM · challengeR (v1.0)

eisenman closed T28119: Unit tests are failing on Ubuntu due to mismatching messages as Resolved.

Dec 20 2020, 9:21 PM · challengeR (v1.0)

eisenman closed T28097: test errors in aggregateThenRank and rankThenAggregate as Resolved.

Dec 20 2020, 9:21 PM · challengeR (v1.0)

eisenman closed T28123: Add notes for Linux users to readme as Resolved.

Dec 20 2020, 9:21 PM · challengeR (v1.0)

eisenman closed T28120: Write release notes for challengeR v1.0 as Resolved.

Dec 20 2020, 9:21 PM · challengeR (v1.0)

eisenman committed rCHALLENGER565de37af81a: Merge tag 'T28125-v1.0.0' into develop (authored by eisenman).

Merge tag 'T28125-v1.0.0' into develop

Dec 20 2020, 9:18 PM

eisenman committed rCHALLENGER55b014bdb3b9: Merge branch 'release/T28125-v1.0.0' (authored by eisenman).

Merge branch 'release/T28125-v1.0.0'

Dec 20 2020, 9:12 PM

eisenman committed rCHALLENGER99079cc3c626: Bump version number (authored by eisenman).

Bump version number

Dec 20 2020, 9:00 PM

eisenman committed rCHALLENGER4bdcc0e9afb4: Add release notes (authored by eisenman).

Add release notes

Dec 20 2020, 8:58 PM