SurfaceInterpolationController::AddLabelSetConnection() is called while m_SelectedSegmentation is different to the segmentation retrieved from the ToolManager in QmitkSlicesInterpolator. So both interpolation classes seem to be out of sync and referring to different segmentations. This leads to the attempt to access the label set on layer 1 in an segmentation, that only has layer 0.

Mon, Mar 6, 1:35 PM · MITK (v2023.04)

kislinsk triaged T29476: [Segmentation] [Interpolation] Unknown exception when creating new segmentation while interpolation is active on current segmentation at layer != 0 as High priority.

Mon, Mar 6, 1:11 PM · MITK (v2023.04)

kislinsk added a comment to T29475: QmitkMultiLabelInspector: Should right click change selection? .

I am leaning towards changing selection as it is what users (and I) expect based on experience with other list widgets like the Data Manager.

Mon, Mar 6, 12:39 PM · MITK (v2023.04), Checklist

kislinsk closed T29473: mitkImageToContourFilterTest and mitkSurfaceInterpolationControllerTest fail with new segmentation interpolation as Resolved.

Mon, Mar 6, 12:27 PM · MITK (v2023.04)

kislinsk added a comment to T29473: mitkImageToContourFilterTest and mitkSurfaceInterpolationControllerTest fail with new segmentation interpolation.

Deleted branch from rMITK MITK: bugfix/T29473-FixSurfaceInterpolationControllerTest.

Mon, Mar 6, 12:26 PM · MITK (v2023.04)

kislinsk committed rMITKe208c9bc5053: Clean up includes of SurfaceInterpolationController (authored by kislinsk).

Clean up includes of SurfaceInterpolationController

Mon, Mar 6, 12:26 PM

kislinsk committed rMITKc25c6d745617: Fix SurfaceInterpolationControllerTest (authored by kislinsk).

Fix SurfaceInterpolationControllerTest

Mon, Mar 6, 12:26 PM

kislinsk committed rMITK52eb66f47807: Merge branch 'bugfix/T29473-FixSurfaceInterpolationControllerTest' into develop (authored by kislinsk).

Merge branch 'bugfix/T29473-FixSurfaceInterpolationControllerTest' into develop

Mon, Mar 6, 12:26 PM

kislinsk added a comment to T29473: mitkImageToContourFilterTest and mitkSurfaceInterpolationControllerTest fail with new segmentation interpolation.

Pushed new branch to rMITK MITK: bugfix/T29473-FixSurfaceInterpolationControllerTest.

Mon, Mar 6, 11:55 AM · MITK (v2023.04)

Sat, Mar 4

floca moved T29475: QmitkMultiLabelInspector: Should right click change selection? from Backlog to MITK Meeting on the Request for Discussion board.

Sat, Mar 4, 6:20 PM · MITK (v2023.04), Checklist

floca triaged T29475: QmitkMultiLabelInspector: Should right click change selection? as High priority.

Sat, Mar 4, 6:20 PM · MITK (v2023.04), Checklist

Fri, Mar 3

kalali claimed T29403: [mxn multi widget] Concept for crosshair data type.

Fri, Mar 3, 4:43 PM · MITK (v2023.04)

kislinsk added a comment to T29473: mitkImageToContourFilterTest and mitkSurfaceInterpolationControllerTest fail with new segmentation interpolation.

Status:

mitkImageToContourFilterTest
mitkSurfaceInterpolationControllerTest

Fri, Mar 3, 4:15 PM · MITK (v2023.04)

kislinsk added a comment to T29473: mitkImageToContourFilterTest and mitkSurfaceInterpolationControllerTest fail with new segmentation interpolation.

Deleted branch from rMITK MITK: bugfix/T29473-FixUnitTests.

Fri, Mar 3, 4:14 PM · MITK (v2023.04)

kislinsk committed rMITK098a48f8c263: Fix ImageToContourFilterTest (authored by kislinsk).

Fix ImageToContourFilterTest

Fri, Mar 3, 4:14 PM

kislinsk committed rMITKfabc5dfd253b: Extended unit test for the ImageToContour filter (authored by kislinsk).

Extended unit test for the ImageToContour filter

Fri, Mar 3, 4:14 PM

kislinsk committed rMITK5127b2231ad3: Fix ImageToContourFilter for arbitrary contour values (authored by kislinsk).

Fix ImageToContourFilter for arbitrary contour values

Fri, Mar 3, 4:14 PM

kislinsk committed rMITK451083e41ab8: Fix ImageToContourFilterTest (authored by kislinsk).

Fix ImageToContourFilterTest

Fri, Mar 3, 4:14 PM

floca triaged T29474: [SEG] Remove exterior label as Normal priority.

Fri, Mar 3, 4:08 PM · Next Milestone

kalali added a comment to T28578: [mxn multi widget] Optimization of the mxn multi widget.

Pushed new branch to rMITK MITK: feature/T28578-Test-MxN-installer.

Fri, Mar 3, 2:11 PM · MITK

kislinsk committed rMD1f9f0e9dcdc2: Add more test data for mitkImageToContourFilterTest (authored by kislinsk).

Add more test data for mitkImageToContourFilterTest

Fri, Mar 3, 12:19 PM

a178n added a comment to T29468: Let MITK handle TotalSegmentator setup.

Pushed new branch to rMITK MITK: feature/T29468-totalsegmentator-install.

Fri, Mar 3, 9:46 AM · MITK (v2023.04)

a178n added a comment to T29468: Let MITK handle TotalSegmentator setup.

Deleted branch from rMITK MITK: feature/T29468-total-segmentator-install.

Fri, Mar 3, 9:43 AM · MITK (v2023.04)

a178n added a comment to T29468: Let MITK handle TotalSegmentator setup.

Pushed new branch to rMITK MITK: feature/T29468-total-segmentator-install.

Fri, Mar 3, 9:24 AM · MITK (v2023.04)

Wed, Mar 1

kalali added a revision to T29335: [Segmentation] Show interactive warning for uninitialized render window geometry: Unknown Object (Differential Revision).

Wed, Mar 1, 4:36 PM · MITK (v2023.04)

kalali removed a revision from T29402: [mxn multi widget] Concept for blocking individual render windows: Unknown Object (Differential Revision).

Wed, Mar 1, 4:36 PM · MITK (v2023.04)

kislinsk added a revision to T29473: mitkImageToContourFilterTest and mitkSurfaceInterpolationControllerTest fail with new segmentation interpolation: Unknown Object (Differential Revision).

Wed, Mar 1, 4:08 PM · MITK (v2023.04)

kislinsk claimed T29473: mitkImageToContourFilterTest and mitkSurfaceInterpolationControllerTest fail with new segmentation interpolation.

Wed, Mar 1, 4:07 PM · MITK (v2023.04)

kislinsk added a revision to T29473: mitkImageToContourFilterTest and mitkSurfaceInterpolationControllerTest fail with new segmentation interpolation: Unknown Object (Differential Revision).

Wed, Mar 1, 4:02 PM · MITK (v2023.04)

kislinsk added a comment to T29473: mitkImageToContourFilterTest and mitkSurfaceInterpolationControllerTest fail with new segmentation interpolation.

Pushed new branch to rMITK MITK: bugfix/T29473-FixUnitTests.

Wed, Mar 1, 3:59 PM · MITK (v2023.04)

a178n added a comment to T29463: Doxygen documentation for TotalSegmentator.

Pushed new branch to rMITK MITK: feature/T29463-totalsegmentator-doku.

Wed, Mar 1, 2:06 PM · MITK (v2023.04)

kislinsk triaged T29473: mitkImageToContourFilterTest and mitkSurfaceInterpolationControllerTest fail with new segmentation interpolation as High priority.

Wed, Mar 1, 1:00 PM · MITK (v2023.04)

kislinsk closed T29060: [Segmentation] Glitch in label color after 3d-interpolation, a subtask of T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View, as Resolved.

Wed, Mar 1, 12:56 PM · MITK (v2023.04), Restricted Project

kislinsk closed T29060: [Segmentation] Glitch in label color after 3d-interpolation as Resolved.

Wed, Mar 1, 12:56 PM · MITK (v2023.04), Checklist

kislinsk placed T29105: [3D Surface Interpolation] 3D+t Interpolation Preview Crashes When Going Through Different Time Steps up for grabs.

Wed, Mar 1, 12:49 PM · MITK (v2023.04), Checklist

kislinsk closed T26172: 2D interpolation in MultiLabelSegmentation Editor only works for 1. label , a subtask of T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View, as Resolved.

Wed, Mar 1, 12:43 PM · MITK (v2023.04), Restricted Project

kislinsk closed T26172: 2D interpolation in MultiLabelSegmentation Editor only works for 1. label as Resolved.

Wed, Mar 1, 12:43 PM · MITK (v2023.04)

kislinsk closed T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View as Resolved.

Wed, Mar 1, 12:42 PM · MITK (v2023.04), Restricted Project

kislinsk added a comment to T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View.

Deleted branch from rMITK MITK: feature/T27319-multilabelInterpolation.

Wed, Mar 1, 12:42 PM · MITK (v2023.04), Restricted Project

kislinsk added a comment to T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View.

Deleted branch from rMITK MITK: feature/T27319-IntegrationBranch.

Wed, Mar 1, 12:41 PM · MITK (v2023.04), Restricted Project

kislinsk committed rMITK8ddb4bb4b54b: multilabel interpolation functionality added (authored by • s349i).

multilabel interpolation functionality added

Wed, Mar 1, 12:40 PM

kislinsk committed rMITKfc5ba98d32b1: Merge branch 'feature/T27319-IntegrationBranch' into develop (authored by kislinsk).

Merge branch 'feature/T27319-IntegrationBranch' into develop

Wed, Mar 1, 12:40 PM

kislinsk added a comment to T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View.

Pushed new branch to rMITK MITK: feature/T27319-IntegrationBranch.

Wed, Mar 1, 12:40 PM · MITK (v2023.04), Restricted Project

kislinsk claimed T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View.

Wed, Mar 1, 12:39 PM · MITK (v2023.04), Restricted Project

Feb 28 2023

a178n created T29472: [SEG][Bug] Otsu Preview labels not updated when parameters are changed..

Feb 28 2023, 11:44 AM · MITK

kislinsk added a comment to T29317: Clean up DICOM Browser plugin.

From a first glimpse it really needs to be continued before merging. Can't make much sense right now out of mitk::StoreSCPLauncherBuilder in parallel to QmitkStoreSCPLauncher::Params. Have to take a closer look.

Feb 28 2023, 10:00 AM · Next Milestone, MITK

kislinsk added a comment to T29445: Make Segmentation Tasks Lists fully available in the MITK Workbench.

Deleted branch from rMITK MITK: feature/T29445-MoveSegmentationTaskListWidgetToModules.

Feb 28 2023, 9:45 AM · MITK (v2023.04)

kislinsk committed rMITK2918e10f86e4: Move QmitkSegmentationTaskListWidget to SegmentatiomUI module (authored by kislinsk).

Move QmitkSegmentationTaskListWidget to SegmentatiomUI module

Feb 28 2023, 9:44 AM

kislinsk committed rMITKef90d3210b01: Merge branch 'feature/T29445-MoveSegmentationTaskListWidgetToModules' into… (authored by kislinsk).

Merge branch 'feature/T29445-MoveSegmentationTaskListWidgetToModules' into…

Feb 28 2023, 9:44 AM

kislinsk added a comment to T29445: Make Segmentation Tasks Lists fully available in the MITK Workbench.

Pushed new branch to rMITK MITK: feature/T29445-MoveSegmentationTaskListWidgetToModules.

Feb 28 2023, 9:43 AM · MITK (v2023.04)

floca added a comment to T29317: Clean up DICOM Browser plugin.

Should we integrate that in develop? Or any reason to wait?

Feb 28 2023, 8:47 AM · Next Milestone, MITK

kislinsk added a comment to T24398: Dicom plugin: Retrieve does not work.

Found my changes in T29317. :)

Feb 28 2023, 8:23 AM · MITK (v2023.04)

Feb 27 2023

kalali added a revision to T29402: [mxn multi widget] Concept for blocking individual render windows: Unknown Object (Differential Revision).

Feb 27 2023, 5:43 PM · MITK (v2023.04)

kislinsk added a comment to T29469: "Scan directory" in MITK DICOM Browser freezes application on MacOS.

I see, I then should probably blow the dust off of the MacBook in my drawer and start to suffer as well. :) / :(

Feb 27 2023, 2:16 PM · MITK (v2023.04)

kislinsk closed T29471: Update text of MITK Workbench About dialog as Resolved.

Feb 27 2023, 1:55 PM · MITK

kislinsk added a comment to T29471: Update text of MITK Workbench About dialog.

Deleted branch from rMITK MITK: bugfix/T29471-UpdateAboutDialog.

Feb 27 2023, 1:55 PM · MITK

kislinsk committed rMITK5dd390f73053: Remove unused .ui file (authored by kislinsk).

Remove unused .ui file

Feb 27 2023, 1:55 PM

kislinsk committed rMITK74e3a7925e71: Update text in the About dialog (authored by kislinsk).

Update text in the About dialog

Feb 27 2023, 1:55 PM

kislinsk committed rMITKc1847f4c4a32: Merge branch 'bugfix/T29471-UpdateAboutDialog' into develop (authored by kislinsk).

Merge branch 'bugfix/T29471-UpdateAboutDialog' into develop

Feb 27 2023, 1:55 PM

kislinsk added a comment to T29471: Update text of MITK Workbench About dialog.

Pushed new branch to rMITK MITK: bugfix/T29471-UpdateAboutDialog.

Feb 27 2023, 1:54 PM · MITK

kislinsk triaged T29471: Update text of MITK Workbench About dialog as Wishlist priority.

Feb 27 2023, 1:51 PM · MITK

aklein added a comment to T29469: "Scan directory" in MITK DICOM Browser freezes application on MacOS.

Hi Stefan,

Feb 27 2023, 1:32 PM · MITK (v2023.04)

kislinsk added a comment to T29469: "Scan directory" in MITK DICOM Browser freezes application on MacOS.

Hi André, does it freeze for you when scanning the MITK-Data/3D+t-Heart directory? I try to narrow it down but this directory works for me for example.

Feb 27 2023, 11:08 AM · MITK (v2023.04)

kislinsk placed T29412: List of MITK publications on web page is not up to date up for grabs.

Feb 27 2023, 11:00 AM · MITK

Feb 23 2023

a178n added a comment to T29461: TotalSegmentator output label names conundrum.

for "ii" the developments of T29392 could be of help (if we also implement a reader of this kind). But we would still need to generate the meta info file

Feb 23 2023, 6:38 PM · MITK

eisenman added a comment to T29361: [external] Seed does not have an effect on bootstrap samples.

I implemented Manuel's suggestions in branch hotfix/T29361-EnsureReproducibilityWithParallelBootstrapping and added corresponding unit tests to test-bootstrap.R.

Feb 23 2023, 10:34 AM · challengeR

kislinsk moved T29469: "Scan directory" in MITK DICOM Browser freezes application on MacOS from Backlog to MITK Meeting on the Request for Discussion board.

Feb 23 2023, 6:47 AM · MITK (v2023.04)

kislinsk raised the priority of T29469: "Scan directory" in MITK DICOM Browser freezes application on MacOS from Normal to Needs Triage.

Feb 23 2023, 6:47 AM · MITK (v2023.04)

kislinsk closed T29470: Fix stray plugin manuals as Resolved.

Feb 23 2023, 6:41 AM · MITK

kislinsk added a comment to T29470: Fix stray plugin manuals.

Deleted branch from rMITK MITK: bugfix/T29470-FixPluginManuals.

Feb 23 2023, 6:40 AM · MITK

kislinsk committed rMITK597e0f35fd1a: Remove unused images (authored by kislinsk).

Remove unused images

Feb 23 2023, 6:39 AM

kislinsk committed rMITK6ac726a016ab: Fix icon color (authored by kislinsk).

Fix icon color

Feb 23 2023, 6:39 AM

kislinsk committed rMITKb27888d572a3: Remove default documentation stub (authored by kislinsk).

Remove default documentation stub

Feb 23 2023, 6:39 AM

kislinsk committed rMITK0950f4b04a0e: Add missing plugin manuals (authored by kislinsk).

Add missing plugin manuals

Feb 23 2023, 6:39 AM

kislinsk committed rMITK4e7b382bd54e: Merge branch 'bugfix/T29470-FixPluginManuals' into develop (authored by kislinsk).

Merge branch 'bugfix/T29470-FixPluginManuals' into develop

Feb 23 2023, 6:39 AM

kislinsk added a comment to T29470: Fix stray plugin manuals.

Pushed new branch to rMITK MITK: bugfix/T29470-FixPluginManuals.

Feb 23 2023, 6:38 AM · MITK

kislinsk triaged T29470: Fix stray plugin manuals as Normal priority.

Feb 23 2023, 6:27 AM · MITK

Feb 22 2023

kalali added a comment to T29297: [mxn multi widget] Optimize data accessibility inside render windows.

Deleted branch from rMITK MITK: feature/T29297-Use-selection-widgets-in-render-window-utility.

Feb 22 2023, 5:33 PM · MITK (v2023.04)

s434n claimed T26555: [mxn multi widget] Provide different default layouts.

Feb 22 2023, 5:11 PM · MITK

s434n removed a project from T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View: Request for Discussion.

Feb 22 2023, 5:07 PM · MITK (v2023.04), Restricted Project

aklein triaged T29469: "Scan directory" in MITK DICOM Browser freezes application on MacOS as Normal priority.

Feb 22 2023, 5:04 PM · MITK (v2023.04)

a178n triaged T29468: Let MITK handle TotalSegmentator setup as Normal priority.

Feb 22 2023, 4:04 PM · MITK (v2023.04)

a178n added a comment to T29458: Include Advanced settings support for TotalSegmentator tool in MITK.

Hi Ralf,

Feb 22 2023, 3:46 PM · MITK (v2023.04)

a178n added a comment to T29458: Include Advanced settings support for TotalSegmentator tool in MITK.

After discussion, it's decided that out of the abovementioned "advanced" flags, only --fast will be implemented along with GPU selection.
The --statistics flag seems to bring to some value & it's inclusion was separately discussed here: T29465

Feb 22 2023, 3:25 PM · MITK (v2023.04)

neher closed T29467: Render fiber line width in 2D as Resolved.

Feb 22 2023, 3:18 PM · MITK Diffusion

neher committed rMITKDIFF518237149917: Merge branch 'T29467-FiberWidth' (authored by neher).

Merge branch 'T29467-FiberWidth'

Feb 22 2023, 3:16 PM

neher committed rMITKDIFFfbc2b06abab3: Line with rendered correctly (authored by neher).

Line with rendered correctly

Feb 22 2023, 3:15 PM

neher triaged T29467: Render fiber line width in 2D as Normal priority.

Feb 22 2023, 3:09 PM · MITK Diffusion

a178n removed a project from T29465: How to display available statistics of segmentation: Request for Discussion.