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May 29 2019

kislinsk closed T19989: MITK Youtube channel, a subtask of T19985: MITK Videos, as Wontfix.
May 29 2019, 1:04 PM · Restricted Project, MITK
kislinsk closed T19989: MITK Youtube channel as Wontfix.

Closing these tasks because of inactivity and completely changed way of building MITK.

May 29 2019, 1:04 PM · Restricted Project, MITK
kislinsk closed T19988: Cut Tutorial Videos, a subtask of T19985: MITK Videos, as Wontfix.
May 29 2019, 1:04 PM · Restricted Project, MITK
kislinsk closed T19988: Cut Tutorial Videos as Wontfix.

Closing these tasks because of inactivity and completely changed way of building MITK.

May 29 2019, 1:04 PM · Restricted Project, MITK
kislinsk closed T19985: MITK Videos as Wontfix.

Closing these tasks because of inactivity and completely changed way of building MITK.

May 29 2019, 1:04 PM · Restricted Project, MITK
kislinsk added a comment to T10304: NavigationDataPlayer should support tool storages.

Was never merged into master, what shall we do, @franza ?

May 29 2019, 1:02 PM · Bugzilla, MITK
kislinsk closed T18520: Geometry CleanUp Reloaded as Resolved.

Close as resolved because of last activity was three years ago.

May 29 2019, 1:00 PM · Bugzilla, MITK
kislinsk moved T10304: NavigationDataPlayer should support tool storages from Bugsquashing - In Progress to Backlog on the MITK board.
May 29 2019, 12:46 PM · Bugzilla, MITK
kislinsk moved T18520: Geometry CleanUp Reloaded from Bugsquashing - In Progress to Backlog on the MITK board.
May 29 2019, 12:46 PM · Bugzilla, MITK
kislinsk moved T19985: MITK Videos from Bugsquashing - In Progress to Backlog on the MITK board.
May 29 2019, 12:46 PM · Restricted Project, MITK
kleina added a comment to T26029: [image statistics plugin] 4D image + 4D segmentation as mask does not work.

Yeah, we did... to be honest, I don't know if it is merged yet. @kausch can you please check this?

May 29 2019, 11:54 AM · Restricted Project, MITK
hentsch added a comment to T26029: [image statistics plugin] 4D image + 4D segmentation as mask does not work.

@kausch @kleina you resolved this task, right?
If not done already, please merge to the master.

May 29 2019, 11:48 AM · Restricted Project, MITK
hentsch renamed T26367: [ModelFitInspector] Remove bookmark doesn't work from Remove bookmark doesn't work to [ModelFitInspector] Remove bookmark doesn't work.
May 29 2019, 10:42 AM · Restricted Project, Restricted Project, MITK
hentsch triaged T26368: [ModelFitInspector] Performance if multiple bookmark points are added as Normal priority.
May 29 2019, 10:42 AM · Restricted Project, Restricted Project, MITK
hentsch triaged T26367: [ModelFitInspector] Remove bookmark doesn't work as Normal priority.
May 29 2019, 10:38 AM · Restricted Project, Restricted Project, MITK
hentsch triaged T26366: [ModelFitInspector] Fixed scaling doesn't work yet as Normal priority.
May 29 2019, 10:34 AM · Restricted Project, Restricted Project, MITK
hentsch added a comment to T25832: Migrate ModelFit inspector plugin to MitkChart.

GCC compiles also fine

May 29 2019, 10:31 AM · Restricted Project, Restricted Project, MITK

May 28 2019

kalali closed T26270: Update MatchPoint third party file as Resolved.
May 28 2019, 11:42 AM · MITK
kalali added a comment to T19683: "Show only selected node" changes the visibility of crosshair.

Why are there now 2 actions? Did we miss some side effects with the base renderer?

May 28 2019, 11:21 AM · Bugzilla, Pull Request, MITK
kislinsk triaged T26347: Compile error in ModelFit with Visual Studio 2017 15.9.11 as High priority.

Okay, so, basically not the 2018.04 branch.

May 28 2019, 9:51 AM · MITK
maleike added a comment to T26356: Colored render window frames misaligned.

For illustration:

multiwidget.jpg (943×901 px, 49 KB)
multiwidget_detail.jpg (60×77 px, 8 KB)

May 28 2019, 8:45 AM · MITK
maleike updated the task description for T26356: Colored render window frames misaligned.
May 28 2019, 8:40 AM · MITK
maleike created T26356: Colored render window frames misaligned.
May 28 2019, 8:39 AM · MITK

May 27 2019

maleike added a comment to T24860: MitkCore seems not to apply a default level/window property ("levelwindow").

I just looked into this again and provided a merge request (https://github.com/MITK/MITK/pull/233). This also merges into the current release/2018-xx branch

May 27 2019, 11:44 AM · MITK

May 24 2019

floca added a comment to T26347: Compile error in ModelFit with Visual Studio 2017 15.9.11 .

It affects every branch that containes the ModelFit module and tries to build it with VS 2017 >=15.9.11

May 24 2019, 5:11 PM · MITK
hentsch added a comment to T25832: Migrate ModelFit inspector plugin to MitkChart.

all functions implemented, just need to test compiling with GCC

May 24 2019, 4:12 PM · Restricted Project, Restricted Project, MITK
hentsch added a comment to T25832: Migrate ModelFit inspector plugin to MitkChart.

Pushed new branch T25832-migrateModelFit2019-05.2.

May 24 2019, 3:11 PM · Restricted Project, Restricted Project, MITK
steint added a comment to T25927: Creating Annotations in fast succession assigns them the same GUIDs.

Pushed new branch T25927-fix-uid-generation.

May 24 2019, 2:47 PM · MITK
sridhara added a comment to T25831: [MITDoc][ImageStatistics] Improve documentation.

Pushed new branch [[/source/mitk/browse/T25831-_new_image_statistics_plugin%255D_improve_documentation/ | T25831-_new_image_statistics_plugin]_improve_documentation]].

May 24 2019, 2:43 PM · MITK
kislinsk added a comment to T26347: Compile error in ModelFit with Visual Studio 2017 15.9.11 .

I'm totally in for Boost 1.69+. The interesting question for me is, does this issue affect the 2018.04 branch as well or only the master branch?

May 24 2019, 2:03 PM · MITK
hentsch merged task T12220: [image statistics] compute statistics even when closed planar figure is partially out of the image geometry bounds into Restricted Maniphest Task.
May 24 2019, 11:41 AM · MITK, Bugzilla
hentsch added a comment to T12220: [image statistics] compute statistics even when closed planar figure is partially out of the image geometry bounds.

At least the statistics table should not show the old values but instead show maybe no values and display a warning for wrong placed mask.

May 24 2019, 11:41 AM · MITK, Bugzilla
hentsch updated subscribers of T25831: [MITDoc][ImageStatistics] Improve documentation.
May 24 2019, 10:49 AM · MITK
hentsch added a comment to T25831: [MITDoc][ImageStatistics] Improve documentation.

the checklist may be of help. It's here: E130-Data/Release\Checklisten\MITK Workbench Release/Checkliste NEW Image Statistics.docx

May 24 2019, 10:48 AM · MITK

May 23 2019

aguilera added a comment to T23624: Connection to Epiphan frame grabber via OpenCV is buggy.

Pushed new branch T23624-ConnectionToEpiphanFrameGrabberViaOpenCVIsBuggy.

May 23 2019, 6:42 PM · IMSY, IGT, Restricted Project, MITK
aguilera added a project to T23624: Connection to Epiphan frame grabber via OpenCV is buggy: IMSY.
May 23 2019, 6:42 PM · IMSY, IGT, Restricted Project, MITK
floca created T26347: Compile error in ModelFit with Visual Studio 2017 15.9.11 .
May 23 2019, 5:42 PM · MITK

May 17 2019

floca removed a project from T26294: Should we move DICOMPropertyPath helper to Core: Request for Discussion.

Result of the discussion:
At the current state we voted against moving to core.

May 17 2019, 11:24 AM · MITK (v2024.06), DICOM
floca added a project to T25805: Standardize/Rework DICOM module naming: DICOM.
May 17 2019, 11:18 AM · Noteworthy, Breaking Change, MITK (v2021.02), DICOM
floca removed a project from T25496: Visualize RTDOSE correctly: Request for Discussion.

Result of the discussion:

May 17 2019, 11:16 AM · MITK
sridhara added a comment to T26334: Include distortion correction filter .

Pushed new branch T26334-Include_distortion_correction_filter.

May 17 2019, 10:53 AM · Auto-closed, Restricted Project, IMSY, MITK

May 16 2019

hentsch removed a parent task for T24795: ModelFit visualization bug?: Restricted Maniphest Task.
May 16 2019, 2:00 PM · Auto-closed, MITK, Restricted Project
hentsch changed the visibility for T24795: ModelFit visualization bug?.
May 16 2019, 1:59 PM · Auto-closed, MITK, Restricted Project
hentsch removed a parent task for T24566: 3d+t image loaded with wrong timegeometry: Restricted Maniphest Task.
May 16 2019, 1:51 PM · MITK (v2021.02), Restricted Project
sridhara created T26334: Include distortion correction filter .
May 16 2019, 10:44 AM · Auto-closed, Restricted Project, IMSY, MITK

May 15 2019

hentsch triaged T26332: [ImageStatistics] ImageStatisticsContainerManager as function as Normal priority.
May 15 2019, 11:20 AM · MITK
kislinsk added a comment to T26331: Offer screenshot from "working plane" (axial, sagittal, coronar) by **default**.

I guess we could reasonably choose the selected/active 2d window but that might be sometimes different to the users working plane as it is simply defined by the window that was clicked the last time.

May 15 2019, 10:40 AM · Auto-closed, MITK
full triaged T26331: Offer screenshot from "working plane" (axial, sagittal, coronar) by **default** as Wishlist priority.
May 15 2019, 8:59 AM · Auto-closed, MITK

May 14 2019

mittmann moved T25522: Fiducial based CT registration from Ready for merge to Finished on the IGT board.
May 14 2019, 10:21 PM · Restricted Project, MITK, IGT

May 13 2019

mittmann moved T25522: Fiducial based CT registration from In Progress to Ready for merge on the IGT board.
May 13 2019, 11:30 AM · Restricted Project, MITK, IGT
mittmann added a comment to T25522: Fiducial based CT registration.

Pushed new branch T25522-MasterIntegrationBranch-13-05-2019.

May 13 2019, 11:30 AM · Restricted Project, MITK, IGT

May 10 2019

hentsch added a comment to T25832: Migrate ModelFit inspector plugin to MitkChart.

Pushed new branch T25832-migrateModelFit2019-05.

May 10 2019, 4:18 PM · Restricted Project, Restricted Project, MITK
hentsch closed T26324: [MitkChart] optimize zooming option as Resolved by committing rMITK8b388b272304: resolved T26324 min/max values of x and y are now stored as variable in….
May 10 2019, 2:48 PM · MITK
hentsch added a comment to T26324: [MitkChart] optimize zooming option.

Pushed new branch T26324-optimizeZoomingOption.

May 10 2019, 2:47 PM · MITK
hentsch triaged T26324: [MitkChart] optimize zooming option as Normal priority.
May 10 2019, 1:50 PM · MITK
kalali added a revision to T26270: Update MatchPoint third party file: Restricted Differential Revision.
May 10 2019, 1:48 PM · MITK
kausch added a comment to T25871: [chart] Implement the chart type pie.

Pushed new branch T25871-fix-unsigned-int-comparison-warning.

May 10 2019, 1:46 PM · Restricted Project, MITK
kausch added a comment to T19683: "Show only selected node" changes the visibility of crosshair.

Pushed new branch T19683-ShowOnlySelectedNodesCrosshairVisibilty-baseRenderer.

May 10 2019, 1:30 PM · Bugzilla, Pull Request, MITK
floca added a comment to T26323: [MitkChart] add feature to highlight/colorize point.

I think it would be nice but is no show stopper, because we could, as a work arround, use a chartline that only contains the highlited point(s).

May 10 2019, 1:25 PM · Auto-closed, MITK
hentsch added a comment to T25832: Migrate ModelFit inspector plugin to MitkChart.

T26323 is needed to highlight the current point

May 10 2019, 1:21 PM · Restricted Project, Restricted Project, MITK
hentsch triaged T26323: [MitkChart] add feature to highlight/colorize point as Normal priority.
May 10 2019, 1:21 PM · Auto-closed, MITK
hentsch added a comment to T25832: Migrate ModelFit inspector plugin to MitkChart.

Feedback from @floca:

  1. Der Titel der X-Achse und die Achsenbeschriftungen liegen über einander und sind deshalb nicht zu lesen.
    • is already fixed with T26274, but not yet in this branch
  2. Fixed Scaling (für X und Y) funktioniert nicht richtig.
    • true
  3. In der Methode OnFullPlotClicked ist ein Task (T26222) referenziert, den es gar nicht gibt. Vielleicht ist das aber jetzt auch schon durch meinen Fix erledigt.
    • code was deleted, works fine
  4. Kritische Regression gegenüber dem alten Widget: Im Moment flackert es immer sobald man die Achsen anpasst oder (noch schlimmer) wenn man einen neuen Punkt ansteuert. Dass ist insbesondere beim explorieren von Daten nicht gut, da es leicht laggt und sehr irritiert.
    • opened T26320
  5. Kritische Regression gegenüber dem alten Widget: Im Moment aktualisiert sich der Plot erst wenn man die Maus wieder loslässt (wenn man im SliceNavigator oder direkt im Bild neue Punkte anfährt). Früher wurde automatisch immer gleich mit aktualisiert, es wäre sehr gut, wenn das wieder so wäre. Entsprechend müsste der Chart neugemalt werden, jedesmal wenn die Positionsänderung propagiert wird. Im Moment sieht es so aus, als würde gewartet, bis der Main-Thread idelt.
    • can't reproduce. The update takes a while (probably because of new painting of the widget), but has nothing to do with mouse click release. @floca we should look again if T26320 is fixed.
May 10 2019, 1:15 PM · Restricted Project, Restricted Project, MITK
kislinsk removed a project from T25510: Revolutionize Superbuild: Request for Discussion.
May 10 2019, 11:24 AM · Auto-closed, MITK
hentsch closed T25871: [chart] Implement the chart type pie, a subtask of T23104: Deprecate QmitkPlotWidget, as Resolved.
May 10 2019, 10:15 AM · Restricted Project, MITK
hentsch closed T25871: [chart] Implement the chart type pie as Resolved by committing rMITK95bf067aebbd: fixed T25871.
May 10 2019, 10:15 AM · Restricted Project, MITK
hentsch added a comment to T25871: [chart] Implement the chart type pie.

Pushed new branch T25871-chartTypePie.

May 10 2019, 9:58 AM · Restricted Project, MITK

May 8 2019

hentsch added a comment to T23104: Deprecate QmitkPlotWidget.

This would be favorable. However, if we deprecate the QmitkPlotDialog/QmitkPlotWidget/QtHistogram classes, this leads to warnings (and errors because of warnings-as-errors).
@kislinsk do you see a possibility?

May 8 2019, 11:11 AM · Restricted Project, MITK
hentsch added a comment to T26029: [image statistics plugin] 4D image + 4D segmentation as mask does not work.

@hentsch Is the one time step segmentation applied to all time steps? What is the expected behavior?

May 8 2019, 9:57 AM · Restricted Project, MITK

May 3 2019

kalali closed T22878: Level window slider only affects the topmost visible node in the data manager, a subtask of T25603: Combine render window manager with custom multi widget, as Invalid.
May 3 2019, 11:37 AM · Restricted Project, MITK
kalali closed T22878: Level window slider only affects the topmost visible node in the data manager as Invalid.

This task is not valid anymore.

  1. The level window slider has an option to modify the level window of a (list of) selected node(s) (see T25483)
  2. The BlackSwan project uses the PACS mode where the level window can be changed via mouse buttons
  3. The render window manager now uses the concept of data storage inspectors and thus behaves differently than here
May 3 2019, 11:37 AM · Restricted Project, MITK

May 2 2019

sattler added a comment to T26060: Command-line interface for PhotoacousticsAlgorithms.

Pushed new branch T26060-AddBandpass.

May 2 2019, 5:40 PM · MITK, Photoacoustics
floca added a comment to T23104: Deprecate QmitkPlotWidget.

@hentsch / @kislinsk : Shouldn't we already set QmitkPlotDialog/QmitkPlotWidget/QtHistogram to deprecated then. To give us sooner then later the posibilite to realy remove the code from the codebase. If I see it correctly, that would also gives us the possibility to reomive Qwt as a third party package from MITK. What do you think?

May 2 2019, 1:28 PM · Restricted Project, MITK
kalali added a revision to T26270: Update MatchPoint third party file: Restricted Differential Revision.
May 2 2019, 11:24 AM · MITK

Apr 30 2019

sattler added a comment to T26311: Beamforming GPU memory allocation unstable.

Pushed new branch T26311-temporaryFix.

Apr 30 2019, 6:46 PM · MITK, Photoacoustics
sattler triaged T26311: Beamforming GPU memory allocation unstable as Normal priority.
Apr 30 2019, 6:41 PM · MITK, Photoacoustics
kalali added a revision to T26270: Update MatchPoint third party file: Restricted Differential Revision.
Apr 30 2019, 2:26 PM · MITK
kalali reopened T26270: Update MatchPoint third party file as "Open".

Reopened to revert the latest changed due to errors.

Apr 30 2019, 2:20 PM · MITK
kalali closed T26270: Update MatchPoint third party file as Resolved.
Apr 30 2019, 1:41 PM · MITK
kalali added a revision to T26270: Update MatchPoint third party file: Restricted Differential Revision.
Apr 30 2019, 10:34 AM · MITK

Apr 29 2019

kislinsk edited projects for T25941: Saving Registered Data in new Coordinate frame, added: MITK; removed MITK (2018-04-4).
Apr 29 2019, 12:51 PM · MITK
kislinsk removed a subtask for T25939: DICOM data and Nifti Segmentation don't like each other, 3d+t data: T25988: LabelSetImageIO should support time geometries and property serialization.
Apr 29 2019, 6:33 AM · MITK
kislinsk merged task T25939: DICOM data and Nifti Segmentation don't like each other, 3d+t data into T25988: LabelSetImageIO should support time geometries and property serialization.
Apr 29 2019, 6:32 AM · MITK
kislinsk triaged T25943: Integrate probe calibration related changes as Normal priority.
Apr 29 2019, 6:26 AM · IMSY, MITK
kislinsk triaged T25981: ModelFit: actualize/fix wiki page as Normal priority.
Apr 29 2019, 6:25 AM · Restricted Project, Restricted Project, MITK
kislinsk triaged T26033: Update ModelFit manual as Normal priority.
Apr 29 2019, 6:25 AM · Restricted Project, MITK

Apr 26 2019

aguilera added a comment to T23624: Connection to Epiphan frame grabber via OpenCV is buggy.

It can be integrated and used in a plugin when the frmgrab.dll and frmgrab.lib files were in the same folder (\Epiphan\epiphan_sdk-3.30.3.0007\epiphan\frmgrab\lib\win\x64)

Apr 26 2019, 6:58 PM · IMSY, IGT, Restricted Project, MITK
kalali added a comment to T19683: "Show only selected node" changes the visibility of crosshair.

Would be good to leave the baseRenderer as an argument so that you can set the visibility of a specific node in a predefined base renderer (e.g. by using the RenderWindowManager). This is useful when using the new MultiWidget(Editor).

Apr 26 2019, 5:43 PM · Bugzilla, Pull Request, MITK
kausch added a comment to T19683: "Show only selected node" changes the visibility of crosshair.

Pushed new branch T19683-ShowOnlySelectedNodesCrosshairVisibility.

Apr 26 2019, 3:52 PM · Bugzilla, Pull Request, MITK
floca added a comment to T26029: [image statistics plugin] 4D image + 4D segmentation as mask does not work.

I have concerns with the latest commit. See comments there. You can come by and ask if you have any questions.

Apr 26 2019, 1:18 PM · Restricted Project, MITK
petersej closed T23470: Markdown for Python Example Project as Resolved.

No longer relevant

Apr 26 2019, 11:44 AM · MITK
kausch added a comment to T26029: [image statistics plugin] 4D image + 4D segmentation as mask does not work.

Solution: GetStatisticsForTimeStep method now returns an empty StatisticsObject if no mask is provided for this time step. Thus, histogram and table are empty for those time steps.
Discussion: 1. 4D image + 3D segmentation

  1. 4D image (5 time steps) + 4D segmentation (1 time step)

@hentsch Is the one time step segmentation applied to all time steps? What is the expected behavior?

Apr 26 2019, 11:39 AM · Restricted Project, MITK
kislinsk triaged T26294: Should we move DICOMPropertyPath helper to Core as Wishlist priority.
Apr 26 2019, 11:20 AM · MITK (v2024.06), DICOM
floca moved T26294: Should we move DICOMPropertyPath helper to Core from Backlog to MITK Meeting on the Request for Discussion board.
Apr 26 2019, 10:29 AM · MITK (v2024.06), DICOM
floca created T26294: Should we move DICOMPropertyPath helper to Core.
Apr 26 2019, 10:28 AM · MITK (v2024.06), DICOM
kausch added a comment to T26029: [image statistics plugin] 4D image + 4D segmentation as mask does not work.

Pushed new branch T26029-4DImageAnd4DSegmentation.

Apr 26 2019, 10:15 AM · Restricted Project, MITK
floca moved T25496: Visualize RTDOSE correctly from Backlog to MITK Meeting on the Request for Discussion board.
Apr 26 2019, 9:54 AM · MITK

Apr 24 2019

floca closed T26287: MRI Perfusion crashes (sometimes) when using signal to concentration conversion as Resolved by committing rMITK7ef1b6556231: Fixed T26287.
Apr 24 2019, 3:47 PM · MITK
floca updated subscribers of T26289: MatchPoint causes warnings during SuperBuild.

@kislinsk Stefan, you said you reworked this pragma for MITK? Does it implie any changes for 3rd party projects?

Apr 24 2019, 1:31 PM · MITK, MatchPoint
floca closed T23808: Add Rule base class for DICOM source imagereferences, a subtask of T23754: DataStorage/Relationship clean up/refactoring, as Resolved.
Apr 24 2019, 1:29 PM · MITK
floca closed T23808: Add Rule base class for DICOM source imagereferences as Resolved.
Apr 24 2019, 1:29 PM · MITK