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Jun 28 2021

kalali added a comment to T28490: Segmentation plugin: "new" segmentation should not run reinit!.

After a new segmentation node was been created, it is added to the data manager. This event itself will call RequestUpdateAll multiple times. However, the view will not be reset with the mentioned new value NO_UPDATE - that means, requesting a render update does not change the view / crosshair / camera orientation etc. The view is only updated / reset when InitializeViews or InitializeViewsByBoundingObjects is called (which in turn calls InternalViewInitialization and updates the slice navigation controller).

Jun 28 2021, 2:34 PM · Cleared, MITK (v2021.10)
kalali added a comment to T28490: Segmentation plugin: "new" segmentation should not run reinit!.

A first idea was mentioned here:

Just for testing purposes: I created an additional Enum value to mitk::RenderingManager::RequestType, called NO_UPDATE. [...]

This allows to disable resetting the view / crosshair etc. after a new segmentation has been created.

Jun 28 2021, 10:25 AM · Cleared, MITK (v2021.10)

Jun 25 2021

kalali claimed T28490: Segmentation plugin: "new" segmentation should not run reinit!.
Jun 25 2021, 12:19 PM · Cleared, MITK (v2021.10)
kalali added a comment to T28490: Segmentation plugin: "new" segmentation should not run reinit!.

The QmitkNewSegmentationDialog, which is used for the "New-button" does not contain any logic for resetting the render windows.
It can be used to simply create a new segmentation, e.g. when using the QmitkCreateMultiLabelSegmentationAction from the data manager context menu - here this dialog is used but no re-initialization / view resetting is done.

Jun 25 2021, 12:18 PM · Cleared, MITK (v2021.10)
kalali moved T28490: Segmentation plugin: "new" segmentation should not run reinit! from MITK Meeting to Backlog on the Request for Discussion board.
Jun 25 2021, 10:35 AM · Cleared, MITK (v2021.10)

Jun 16 2021

kalali updated subscribers of T28490: Segmentation plugin: "new" segmentation should not run reinit!.

We should look into this and focus on the mentioned related task by @kislinsk to start with separating the two processes:

  1. matching the geometry of the images for interaction
  2. resetting the view of render windows to see the new segmentation
Jun 16 2021, 12:45 PM · Cleared, MITK (v2021.10)
kalali moved T28490: Segmentation plugin: "new" segmentation should not run reinit! from Backlog to MITK Meeting on the Request for Discussion board.
Jun 16 2021, 9:46 AM · Cleared, MITK (v2021.10)
kalali added a project to T28490: Segmentation plugin: "new" segmentation should not run reinit!: Request for Discussion.
Jun 16 2021, 9:46 AM · Cleared, MITK (v2021.10)

Jun 7 2021

floca raised the priority of T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View from High to Unbreak Now!.
Jun 7 2021, 9:16 AM · MITK (v2023.04), Restricted Project
floca added a parent task for T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View: T28142: [Segmentation] Remove plugin redundancy with MultiLabelSegmentation.
Jun 7 2021, 9:14 AM · MITK (v2023.04), Restricted Project
floca moved T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View from Backlog to Segmentation on the MITK (v2021.10) board.
Jun 7 2021, 9:08 AM · MITK (v2023.04), Restricted Project
floca added a subtask for T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View: T26172: 2D interpolation in MultiLabelSegmentation Editor only works for 1. label .
Jun 7 2021, 9:07 AM · MITK (v2023.04), Restricted Project
floca edited projects for T27319: [Segmentation] Correctly implement interpolation features for Multilabel Segmentation View, added: MITK (v2021.10); removed MITK.
Jun 7 2021, 9:07 AM · MITK (v2023.04), Restricted Project

Jun 6 2021

floca moved T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox from Segmentation to Cycle on the MITK (v2021.10) board.
Jun 6 2021, 8:27 PM · MITK (v2022.10), Cleared
floca moved T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox from Cycle to Segmentation on the MITK (v2021.10) board.
Jun 6 2021, 8:27 PM · MITK (v2022.10), Cleared

Jun 4 2021

floca added a project to T28490: Segmentation plugin: "new" segmentation should not run reinit!: Cleared.
Jun 4 2021, 5:33 PM · Cleared, MITK (v2021.10)

Jun 2 2021

kalali removed a project from T27506: Extend checklists for segmentation view: Restricted Project.
Jun 2 2021, 1:38 PM · MITK (v2022.04), Cleared

May 24 2021

floca added a parent task for T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox: T28499: Refactor/rewrite RegionGrowing3D tool.
May 24 2021, 10:38 AM · MITK (v2022.10), Cleared

May 14 2021

floca closed T26970: [Segmentation] Picking tool: When no region is picked, selected node just gets unselected as Resolved by committing rMITK5ceb625e0fc4: Fixed T26970.
May 14 2021, 12:27 PM · MITK (v2021.10), Cleared

May 6 2021

floca claimed T26970: [Segmentation] Picking tool: When no region is picked, selected node just gets unselected.
May 6 2021, 11:17 AM · MITK (v2021.10), Cleared
floca added a parent task for T26970: [Segmentation] Picking tool: When no region is picked, selected node just gets unselected: T28248: [Segmentation] Picking 3D Tool creates a 3D segmentation out of a 4D image.
May 6 2021, 11:17 AM · MITK (v2021.10), Cleared

May 5 2021

floca claimed T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox.

Will be done together with T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep.

May 5 2021, 8:42 PM · MITK (v2022.10), Cleared

Apr 14 2021

thomass placed T27099: [MITKDoc] Revise Clipping Plane Plugin Documentation up for grabs.

Unassign myself because we removed the clipping plane from the release and have not discussed yet how to further proceed.

Apr 14 2021, 11:01 AM · MITK (v2024.06), Cleared

Apr 9 2021

floca moved T26953: DICOM SEG - Cannot rewrite segmentations as DICOM SEG from Backlog to Segmentation on the MITK (v2021.10) board.
Apr 9 2021, 7:00 PM · MITK (v2024.06), Cleared
floca edited projects for T26953: DICOM SEG - Cannot rewrite segmentations as DICOM SEG, added: MITK (v2021.10); removed MITK, Next Milestone.
Apr 9 2021, 6:54 PM · MITK (v2024.06), Cleared
floca moved T25097: ItkImageIOTest: Missing tests for reading nrrd data with time geometry from Backlog to Tests/Checklists on the MITK (v2021.10) board.
Apr 9 2021, 6:39 PM · MITK (v2024.06), Cleared, Restricted Project
floca edited projects for T28297: Add Stitching MiniApp to installer, added: MITK (v2021.10), Restricted Project; removed Next Milestone, MITK.
Apr 9 2021, 6:36 PM · MITK (v2022.10), Restricted Project, Cleared
floca edited projects for T27455: Go through pull requests, added: MITK (v2021.10); removed Next Milestone, MITK.
Apr 9 2021, 6:30 PM · MITK (v2024.06), Cleared
floca edited projects for T27196: Rewrite packaging of MITK, added: MITK (v2021.10); removed MITK, Next Milestone.
Apr 9 2021, 6:22 PM · MITK (v2024.06), Cleared
floca edited projects for T25097: ItkImageIOTest: Missing tests for reading nrrd data with time geometry, added: MITK (v2021.10); removed Next Milestone, MITK.
Apr 9 2021, 6:21 PM · MITK (v2024.06), Cleared, Restricted Project
floca moved T27506: Extend checklists for segmentation view from Backlog to Tests/Checklists on the MITK (v2021.10) board.
Apr 9 2021, 6:17 PM · MITK (v2022.04), Cleared
floca edited projects for T27506: Extend checklists for segmentation view, added: MITK (v2021.10); removed Next Milestone, MITK.

@kalali That is a good idea and proposal for how to proceed.

Apr 9 2021, 6:16 PM · MITK (v2022.04), Cleared

Apr 7 2021

floca moved T26970: [Segmentation] Picking tool: When no region is picked, selected node just gets unselected from Backlog to Segmentation on the MITK (v2021.10) board.
Apr 7 2021, 9:42 PM · MITK (v2021.10), Cleared
floca edited projects for T26970: [Segmentation] Picking tool: When no region is picked, selected node just gets unselected, added: MITK (v2021.10); removed Next Milestone, MITK.
Apr 7 2021, 9:38 PM · MITK (v2021.10), Cleared
floca added a subtask for T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox: T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep.
Apr 7 2021, 9:37 PM · MITK (v2022.10), Cleared
kalali moved T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox from Backlog to Segmentation on the MITK (v2021.10) board.
Apr 7 2021, 12:24 PM · MITK (v2022.10), Cleared
kalali edited projects for T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox, added: MITK (v2021.10); removed Next Milestone, MITK.
Apr 7 2021, 11:12 AM · MITK (v2022.10), Cleared

Apr 6 2021

kislinsk edited projects for T27432: Error loading DCE-MRI DICOM image, added: MITK (v2021.10); removed MITK, Next Milestone.
Apr 6 2021, 4:29 PM · MITK, DICOM, Cleared

Mar 10 2021

floca reopened T25097: ItkImageIOTest: Missing tests for reading nrrd data with time geometry as "Open".
Mar 10 2021, 10:03 AM · MITK (v2024.06), Cleared, Restricted Project
kislinsk placed T27196: Rewrite packaging of MITK up for grabs.

Currently not actively working on this. Packaging seems to work for the moment except for Python (never did). I think this task will soon be revived with the work on Python in MITK by Kim-Celine and Ashis.

Mar 10 2021, 9:16 AM · MITK (v2024.06), Cleared
kislinsk edited projects for T26970: [Segmentation] Picking tool: When no region is picked, selected node just gets unselected, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2021.10), Cleared
kislinsk edited projects for T27099: [MITKDoc] Revise Clipping Plane Plugin Documentation, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2024.06), Cleared
kislinsk edited projects for T27608: [MITKDoc] Documentation Refurbish - Developer Manual, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2024.06), Cleared
kislinsk edited projects for T27455: Go through pull requests, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2024.06), Cleared
kislinsk edited projects for T27872: [Segmentation] Region Growing 3D GUI does not provide a "Overwrite" checkbox, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2022.10), Cleared
kislinsk edited projects for T27506: Extend checklists for segmentation view, added: MITK, Next Milestone; removed MITK (v2021.02).
Mar 10 2021, 9:09 AM · MITK (v2022.04), Cleared

Mar 2 2021

kislinsk lowered the priority of T27196: Rewrite packaging of MITK from High to Normal.
Mar 2 2021, 11:10 AM · MITK (v2024.06), Cleared
kislinsk closed T23249: Ensure openSSL availability for MITK installers using XNAT plugin or other REST services, a subtask of T27196: Rewrite packaging of MITK, as Resolved.
Mar 2 2021, 11:10 AM · MITK (v2024.06), Cleared

Feb 12 2021

kalali edited projects for T27907: Extend "Checkliste Documentation", added: MITK; removed MITK (v2021.02).
Feb 12 2021, 12:36 PM · Auto-closed, MITK, Cleared
kalali placed T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung" up for grabs.
Feb 12 2021, 12:30 PM · MITK (v2022.04), Cleared
kalali lowered the priority of T27737: Extend "Checkliste Segmentierung – Optionen" from High to Normal.
Feb 12 2021, 12:29 PM · MITK (v2022.04), Cleared
kalali placed T27850: Extend "Checkliste Segmentierung – 3D Segmentierung" up for grabs.
Feb 12 2021, 12:29 PM · MITK (v2022.04), Cleared
kalali placed T27873: Extend "Checkliste Segmentierung – Interpolation" up for grabs.
Feb 12 2021, 12:28 PM · MITK (v2022.04), Cleared
kalali placed T27906: Extend "Checkliste Segmentierung – Utilities" up for grabs.
Feb 12 2021, 12:28 PM · MITK (v2022.04), Cleared

Feb 10 2021

floca triaged T28297: Add Stitching MiniApp to installer as Normal priority.
Feb 10 2021, 6:08 PM · MITK (v2022.10), Restricted Project, Cleared

Jan 15 2021

kislinsk edited projects for T27196: Rewrite packaging of MITK, added: Next Milestone, MITK; removed MITK (v2021.02).
Jan 15 2021, 12:07 PM · MITK (v2024.06), Cleared

Jan 11 2021

kislinsk closed T27717: Mac OS: MITK Workbench&Flowbench crashes immediately after start , a subtask of T27196: Rewrite packaging of MITK, as Resolved.
Jan 11 2021, 11:12 PM · MITK (v2024.06), Cleared

Jan 2 2021

kalali updated the task description for T27906: Extend "Checkliste Segmentierung – Utilities".
Jan 2 2021, 1:47 PM · MITK (v2022.04), Cleared
kalali updated the task description for T27873: Extend "Checkliste Segmentierung – Interpolation".
Jan 2 2021, 1:47 PM · MITK (v2022.04), Cleared
kalali updated the task description for T27850: Extend "Checkliste Segmentierung – 3D Segmentierung".
Jan 2 2021, 1:47 PM · MITK (v2022.04), Cleared
kalali updated the task description for T27737: Extend "Checkliste Segmentierung – Optionen".
Jan 2 2021, 1:47 PM · MITK (v2022.04), Cleared
kalali updated the task description for T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".
Jan 2 2021, 1:47 PM · MITK (v2022.04), Cleared

Dec 14 2020

kalali closed T27817: [Multilabel] Live Wire tool always assigns first label when being used with multiple labels as Resolved.
Dec 14 2020, 2:15 PM · Cleared, MITK (v2021.02)
kalali updated the task description for T27506: Extend checklists for segmentation view.
Dec 14 2020, 12:31 PM · MITK (v2022.04), Cleared
kalali updated the task description for T27906: Extend "Checkliste Segmentierung – Utilities".
Dec 14 2020, 12:31 PM · MITK (v2022.04), Cleared
kalali updated the task description for T27873: Extend "Checkliste Segmentierung – Interpolation".
Dec 14 2020, 12:31 PM · MITK (v2022.04), Cleared
kalali updated the task description for T27737: Extend "Checkliste Segmentierung – Optionen".
Dec 14 2020, 12:30 PM · MITK (v2022.04), Cleared
kalali updated the task description for T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".
Dec 14 2020, 12:30 PM · MITK (v2022.04), Cleared
kalali updated the task description for T27850: Extend "Checkliste Segmentierung – 3D Segmentierung".
Dec 14 2020, 12:30 PM · MITK (v2022.04), Cleared
kalali updated the task description for T27737: Extend "Checkliste Segmentierung – Optionen".
Dec 14 2020, 12:30 PM · MITK (v2022.04), Cleared
kalali updated the task description for T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung".
Dec 14 2020, 12:29 PM · MITK (v2022.04), Cleared
floca added a comment to T27817: [Multilabel] Live Wire tool always assigns first label when being used with multiple labels.

Can D447 landed and this issue closed? If nothing speaks against it, it would be good, before I turning the rest of the seg tools upside down. Thanks.

Dec 14 2020, 12:11 PM · Cleared, MITK (v2021.02)
kalali added a parent task for T27506: Extend checklists for segmentation view: T28108: [Release Checklists] Prepare release checklists.
Dec 14 2020, 11:52 AM · MITK (v2022.04), Cleared
kalali moved T27506: Extend checklists for segmentation view from Segmentation to Test/Checklists on the MITK (v2021.02) board.
Dec 14 2020, 11:05 AM · MITK (v2022.04), Cleared
kalali moved T27716: Extend "Checkliste Segmentierung – Manuelle Segmentierung / 2D Segmentierung" from Segmentation to Test/Checklists on the MITK (v2021.02) board.
Dec 14 2020, 11:05 AM · MITK (v2022.04), Cleared
kalali moved T27737: Extend "Checkliste Segmentierung – Optionen" from Segmentation to Test/Checklists on the MITK (v2021.02) board.
Dec 14 2020, 11:05 AM · MITK (v2022.04), Cleared
kalali moved T27850: Extend "Checkliste Segmentierung – 3D Segmentierung" from Segmentation to Test/Checklists on the MITK (v2021.02) board.
Dec 14 2020, 11:05 AM · MITK (v2022.04), Cleared
kalali moved T27873: Extend "Checkliste Segmentierung – Interpolation" from Segmentation to Test/Checklists on the MITK (v2021.02) board.
Dec 14 2020, 11:04 AM · MITK (v2022.04), Cleared
kalali moved T27906: Extend "Checkliste Segmentierung – Utilities" from Segmentation to Test/Checklists on the MITK (v2021.02) board.
Dec 14 2020, 11:04 AM · MITK (v2022.04), Cleared

Dec 9 2020

floca added a comment to T27608: [MITKDoc] Documentation Refurbish - Developer Manual.

@kompan What is the status here? Is it finish. If not, what has to be done to close it. Should be done before we make a release in january and if much is left, we should know what to do. Thanks.

Dec 9 2020, 2:23 PM · MITK (v2024.06), Cleared

Dec 7 2020

kislinsk closed T28081: Create shortcuts for executables in Windows installers/packages, a subtask of T27196: Rewrite packaging of MITK, as Resolved.
Dec 7 2020, 10:15 PM · MITK (v2024.06), Cleared
kislinsk closed T28081: Create shortcuts for executables in Windows installers/packages as Resolved.
Dec 7 2020, 10:15 PM · Cleared, MITK (v2021.02)
kislinsk added a comment to T28081: Create shortcuts for executables in Windows installers/packages.

Deleted branch bugfix/T28081-ShortcutsInWindowsInstallers.

Dec 7 2020, 10:14 PM · Cleared, MITK (v2021.02)
kislinsk added a comment to T28081: Create shortcuts for executables in Windows installers/packages.

Pushed new branch bugfix/T28081-ShortcutsInWindowsInstallers.

Dec 7 2020, 10:13 PM · Cleared, MITK (v2021.02)
kislinsk triaged T28081: Create shortcuts for executables in Windows installers/packages as Normal priority.
Dec 7 2020, 10:09 PM · Cleared, MITK (v2021.02)
kislinsk updated subscribers of T27196: Rewrite packaging of MITK.
Dec 7 2020, 10:07 PM · MITK (v2024.06), Cleared
kislinsk closed T28080: Microsoft Visual C++ Redistributable not included in packages anymore, a subtask of T27196: Rewrite packaging of MITK, as Resolved.
Dec 7 2020, 8:44 PM · MITK (v2024.06), Cleared
kislinsk closed T28080: Microsoft Visual C++ Redistributable not included in packages anymore as Resolved.
Dec 7 2020, 8:44 PM · Cleared, MITK (v2021.02)
kislinsk added a comment to T28080: Microsoft Visual C++ Redistributable not included in packages anymore.

Deleted branch bugfix/T28080-RedistPackagingAndNSISGenerator.

Dec 7 2020, 8:44 PM · Cleared, MITK (v2021.02)
kislinsk added a comment to T28080: Microsoft Visual C++ Redistributable not included in packages anymore.

Pushed new branch bugfix/T28080-RedistPackagingAndNSISGenerator.

Dec 7 2020, 8:40 PM · Cleared, MITK (v2021.02)
kislinsk triaged T28080: Microsoft Visual C++ Redistributable not included in packages anymore as Normal priority.
Dec 7 2020, 8:28 PM · Cleared, MITK (v2021.02)

Dec 2 2020

kalali added a revision to T27817: [Multilabel] Live Wire tool always assigns first label when being used with multiple labels: Restricted Differential Revision.
Dec 2 2020, 5:46 PM · Cleared, MITK (v2021.02)
kalali claimed T27817: [Multilabel] Live Wire tool always assigns first label when being used with multiple labels.
Dec 2 2020, 4:38 PM · Cleared, MITK (v2021.02)

Nov 28 2020

kislinsk closed T26451: DICOM plugin cannot parse DICOM directories in macOS installer, a subtask of T27196: Rewrite packaging of MITK, as Resolved.
Nov 28 2020, 5:15 AM · MITK (v2024.06), Cleared
kislinsk removed a parent task for T26164: DICOM Query/Retrieve doesn't work at least in Ubuntu release installers: T24398: Dicom plugin: Retrieve does not work.
Nov 28 2020, 5:12 AM · Cleared, MITK (v2021.02)
kislinsk closed T27669: Dicom import issue with MITK binaries (package) and Ubuntu, a subtask of T27196: Rewrite packaging of MITK, as Resolved.
Nov 28 2020, 5:11 AM · MITK (v2024.06), Cleared

Nov 25 2020

gaoh closed Restricted Maniphest Task, a subtask of T27196: Rewrite packaging of MITK, as Invalid.
Nov 25 2020, 10:57 AM · MITK (v2024.06), Cleared

Nov 24 2020

floca added a comment to T26164: DICOM Query/Retrieve doesn't work at least in Ubuntu release installers.

I would see it positiv. No sense crying over spilt milk. Thanks for solving that problem!

Nov 24 2020, 5:12 PM · Cleared, MITK (v2021.02)
kislinsk closed T26164: DICOM Query/Retrieve doesn't work at least in Ubuntu release installers as Resolved.
Nov 24 2020, 9:53 AM · Cleared, MITK (v2021.02)
kislinsk added a comment to T26164: DICOM Query/Retrieve doesn't work at least in Ubuntu release installers.

Mixed feelings here: On one hand I'm happy that we, with a single trivial line of CMake code, finally fixed a decade old severe issue we had in MITK without really noticing it causing quite some inconvenience for our users and we were not able to reproduce it over the years. Maybe we even lost some users right before they actually used MITK because "it cannot open my DICOM files". On the other hand, we fixed a decade old severe issue with a single line of CMake code.

Nov 24 2020, 9:53 AM · Cleared, MITK (v2021.02)