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Oct 4 2022

neher closed T28947: tract rad as Resolved.
Oct 4 2022, 11:52 AM · MITK Diffusion
neher committed rMITKDIFF81136d7bb0b2: undefined reference dcmtk dcmtract fix (authored by neher).
undefined reference dcmtk dcmtract fix
Oct 4 2022, 11:37 AM
neher renamed T29319: DCMTK undefined reference from DCMTK linker error to DCMTK undefined reference.
Oct 4 2022, 11:36 AM · MITK Diffusion
neher triaged T29319: DCMTK undefined reference as Normal priority.
Oct 4 2022, 11:35 AM · MITK Diffusion
kislinsk added a comment to T29318: Polish segmentation tool icons and cursors.

Pushed new branch to rMITK MITK: bugfix/T29318-SegmentationToolIconsAndCursors.

Oct 4 2022, 11:30 AM · MITK (v2022.10)
kislinsk triaged T29318: Polish segmentation tool icons and cursors as Normal priority.
Oct 4 2022, 11:26 AM · MITK (v2022.10)

Oct 3 2022

floca added a comment to T28767: 2D (multi-label) segmentation tools -> paint/wipe unusable for larger images.

Test the switch to TransferLabelContent. It makes it faster, but not fast enough for a good UX. I think the only scalable way is to only process the boundingbox region of the image that (potentialy) altered instead of always the whole image.

Oct 3 2022, 9:47 AM · Request for Discussion, MITK (v2022.10), Checklist
floca claimed T28767: 2D (multi-label) segmentation tools -> paint/wipe unusable for larger images.
Oct 3 2022, 9:35 AM · Request for Discussion, MITK (v2022.10), Checklist
floca added a comment to T28767: 2D (multi-label) segmentation tools -> paint/wipe unusable for larger images.

@isensee could you provide such a large image?
P.S.: not needed any more. found one.

Oct 3 2022, 9:35 AM · Request for Discussion, MITK (v2022.10), Checklist
floca moved T29306: [Segmentation] Provide Close tool (behavior of old Fill tool) from Segmentation to Cycle on the MITK (v2022.10) board.
Oct 3 2022, 9:33 AM · Request for Discussion, MITK (v2022.10)

Sep 30 2022

floca claimed T29306: [Segmentation] Provide Close tool (behavior of old Fill tool).
Sep 30 2022, 3:48 PM · Request for Discussion, MITK (v2022.10)
floca renamed T29306: [Segmentation] Provide Close tool (behavior of old Fill tool) from [Segmentation] Rename Fill tool to [Segmentation] Provide Close tool (behavior of old Fill tool).
Sep 30 2022, 3:48 PM · Request for Discussion, MITK (v2022.10)
kalali placed T29269: Check geometries in SliceNavigationController and BaseRenderer up for grabs.
Sep 30 2022, 10:12 AM · MITK (v2024.06)
kalali added a revision to T29289: Compare responsibilities of QmitkSliceNavigationController related classes: Unknown Object (Differential Revision).
Sep 30 2022, 10:12 AM · MITK
kalali added a revision to T29316: Rename QmitkSliderNavigatorWidget and clean variable names: Restricted Differential Revision.
Sep 30 2022, 10:07 AM · MITK (v2022.10)

Sep 29 2022

kalali closed Restricted Maniphest Task, a subtask of T26496: [mxn multi widget] Re-initializations reset all render windows, as Resolved.
Sep 29 2022, 6:03 PM · MITK (v2022.10), Restricted Project
leamaya updated leamaya.
Sep 29 2022, 12:12 PM
leamaya updated leamaya.
Sep 29 2022, 12:12 PM

Sep 28 2022

floca moved T28145: SetRegionTool does not work as expected (flood fill like) with concentric structures. from Backlog to Cycle on the MITK (v2022.10) board.
Sep 28 2022, 10:37 AM · MITK (v2022.10)
floca claimed T28145: SetRegionTool does not work as expected (flood fill like) with concentric structures..
Sep 28 2022, 10:37 AM · MITK (v2022.10)
floca claimed T28763: [Multilabel Segmentation] Fill / Erase tool does not fully respect multiple labels.
Sep 28 2022, 10:36 AM · MITK (v2022.10), Request for Discussion
floca claimed T29132: [MultiLabel Segmentation] Define desired behavior of fill / erase tool.
Sep 28 2022, 10:35 AM · MITK (v2022.10)
floca moved T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep from Cycle to Segmentation on the MITK (v2022.10) board.
Sep 28 2022, 10:34 AM · MITK (v2024.06)
floca moved T28499: Refactor/rewrite RegionGrowing3D tool from Cycle to Segmentation on the MITK (v2022.10) board.
Sep 28 2022, 10:34 AM · MITK (v2024.06)
floca moved T28499: Refactor/rewrite RegionGrowing3D tool from Segmentation to Cycle on the MITK (v2022.10) board.
Sep 28 2022, 10:33 AM · MITK (v2024.06)
floca moved T28275: [Segmentation] AdaptiveRegionGrowingTool must be refactored / 4D Segmentation returns error message when point is not on the correct timestep from Segmentation to Cycle on the MITK (v2022.10) board.
Sep 28 2022, 10:33 AM · MITK (v2024.06)
floca moved T29307: [Segmentation] Add a fill tool like e.g. GIMP or Photoshop has from Backlog to Cycle on the MITK (v2022.10) board.
Sep 28 2022, 10:33 AM · Next Milestone, Request for Discussion, MITK (v2022.10)
floca added a comment to T24398: Dicom plugin: Retrieve does not work.

Thank you 🙏

Sep 28 2022, 9:43 AM · MITK (v2024.06)
kislinsk added a comment to T29317: Clean up DICOM Browser plugin.

Here's the first batch of clean-up action. Needs to be continued!

Sep 28 2022, 9:40 AM · MITK (v2024.06)
kislinsk triaged T29317: Clean up DICOM Browser plugin as Normal priority.
Sep 28 2022, 9:37 AM · MITK (v2024.06)
kislinsk added a comment to T24398: Dicom plugin: Retrieve does not work.

Our side or also the CTK part.

Hm, lets put it as known issue and discuss its priority when we plan the spring release.

Sep 28 2022, 9:35 AM · MITK (v2024.06)
s349i updated the task description for T28798: [Segmentation][MultiLabel][Utilities] UI is inconsistent / unstable.
Sep 28 2022, 9:16 AM · MITK (v2024.06), Checklist
floca added a revision to T28145: SetRegionTool does not work as expected (flood fill like) with concentric structures.: Unknown Object (Differential Revision).
Sep 28 2022, 9:15 AM · MITK (v2022.10)
floca added a revision to T29078: [Segmentation] Erase tool has unclear edge cases: Unknown Object (Differential Revision).
Sep 28 2022, 9:15 AM · Next Milestone, Checklist
floca added a revision to T29132: [MultiLabel Segmentation] Define desired behavior of fill / erase tool: Unknown Object (Differential Revision).
Sep 28 2022, 9:15 AM · MITK (v2022.10)
floca added a revision to T28763: [Multilabel Segmentation] Fill / Erase tool does not fully respect multiple labels: Unknown Object (Differential Revision).
Sep 28 2022, 9:15 AM · MITK (v2022.10), Request for Discussion

Sep 27 2022

floca added a comment to T24398: Dicom plugin: Retrieve does not work.

thank you for looking into that matter.

Sep 27 2022, 5:38 PM · MITK (v2024.06)
floca edited projects for T24398: Dicom plugin: Retrieve does not work, added: MITK, Next Milestone; removed MITK (v2022.10).

I noticed that the whole plugin is a complete mess BTW and urgently needs at least some clean up to see all the potentials for improvements and bug fixes. :/

Our side or also the CTK part.

Sep 27 2022, 5:38 PM · MITK (v2024.06)
kalali added a parent task for T29316: Rename QmitkSliderNavigatorWidget and clean variable names: T29289: Compare responsibilities of QmitkSliceNavigationController related classes.
Sep 27 2022, 12:43 PM · MITK (v2022.10)
kalali added a subtask for T29289: Compare responsibilities of QmitkSliceNavigationController related classes: T29316: Rename QmitkSliderNavigatorWidget and clean variable names.
Sep 27 2022, 12:43 PM · MITK
kalali updated the task description for T29289: Compare responsibilities of QmitkSliceNavigationController related classes.
Sep 27 2022, 12:42 PM · MITK
kalali updated the task description for T29289: Compare responsibilities of QmitkSliceNavigationController related classes.
Sep 27 2022, 12:17 PM · MITK
kislinsk added a comment to T24398: Dicom plugin: Retrieve does not work.

I looked into the dicombrowser plugin and found out that the directory on Windows is something like %APPDATA%/../Local/Temp/TmpDicomFolder.************. However I didn't see pop up any files after retrieve.

Sep 27 2022, 10:56 AM · MITK (v2024.06)
kalali triaged T29316: Rename QmitkSliderNavigatorWidget and clean variable names as Normal priority.
Sep 27 2022, 9:52 AM · MITK (v2022.10)

Sep 26 2022

floca claimed T29307: [Segmentation] Add a fill tool like e.g. GIMP or Photoshop has.
Sep 26 2022, 6:10 PM · Next Milestone, Request for Discussion, MITK (v2022.10)
s349i updated the task description for T28798: [Segmentation][MultiLabel][Utilities] UI is inconsistent / unstable.
Sep 26 2022, 9:41 AM · MITK (v2024.06), Checklist
s349i updated the task description for T28798: [Segmentation][MultiLabel][Utilities] UI is inconsistent / unstable.
Sep 26 2022, 9:28 AM · MITK (v2024.06), Checklist

Sep 23 2022

j762e added a comment to T28851: [SEG] Add ITK GrowCut as segmentation tool.

Pushed new branch to rMITK MITK: feature/T28851-AddITKGrowCutTool.

Sep 23 2022, 5:49 PM · MITK (v2022.10)
j762e added a comment to T29313: Add a Test to check if the GrowCut algorithm produces a different output.

What do you mean with removed? Is the code still somewhere? If it was functional it would make no sense if someone has to write a new test from scratch.

Tests work again. So if the DLL-Exception/failing tests was the reason for removing it, you can add it again.

Sep 23 2022, 5:46 PM · MITK (v2024.06)
j762e attached a referenced file: F2572275: mitkGrowCutFilterTest.cpp.
Sep 23 2022, 5:37 PM · MITK (v2024.06)
j762e attached a referenced file: F2572274: files.cmake.
Sep 23 2022, 5:37 PM · MITK (v2024.06)
j762e attached a referenced file: F2572277: ExpectedResultImage.nrrd.
Sep 23 2022, 5:37 PM · MITK (v2024.06)
j762e attached a referenced file: F2572276: InputSeedImage.nrrd.
Sep 23 2022, 5:37 PM · MITK (v2024.06)
scholzpa added a comment to T29166: GSP: EndoCV detection challenge.

This is your job @amiiney :)

Sep 23 2022, 4:14 PM · Restricted Project
holzwart added a comment to T29166: GSP: EndoCV detection challenge.

Please move this Task to the IMSY Community Day Issue Board in GitLab:

Sep 23 2022, 3:15 PM · Restricted Project
s434n closed T29308: [Segmentation] Check/revise check list of the fill tool and the erase tool , a subtask of T29132: [MultiLabel Segmentation] Define desired behavior of fill / erase tool, as Resolved.
Sep 23 2022, 3:01 PM · MITK (v2022.10)
s434n closed T29308: [Segmentation] Check/revise check list of the fill tool and the erase tool as Resolved.

I have updated the checklist according to the documented / actual function of the two tools.
However, I had to add a note regarding the "remove everything" functionality of the erase tool, which currently does not work correctly (?) when a segmented region touches the boundary of the image (see T29078 example 2).

Sep 23 2022, 3:01 PM · MITK (v2022.10)
d587s added a member for ARGOS UI: fsagodi.
Sep 23 2022, 2:01 PM
s434n claimed T29308: [Segmentation] Check/revise check list of the fill tool and the erase tool .
Sep 23 2022, 12:23 PM · MITK (v2022.10)
floca claimed T29078: [Segmentation] Erase tool has unclear edge cases.
Sep 23 2022, 10:59 AM · Next Milestone, Checklist
kislinsk moved T24398: Dicom plugin: Retrieve does not work from Backlog to MITK Meeting on the Request for Discussion board.
Sep 23 2022, 9:50 AM · MITK (v2024.06)
kislinsk added a project to T24398: Dicom plugin: Retrieve does not work: Request for Discussion.

I just tried to retrieve data from dicomserver.co.uk and I am able to query and kind of retrieve data. A repeated retrieve even tells me that existing files are overriden. At least that is what the console output tells me. But where are the retrieved images supposed to be stored? And shouldn't the retrieved images appear somewhere in the DICOM editor?

Sep 23 2022, 9:50 AM · MITK (v2024.06)

Sep 22 2022

kalali added a comment to T29313: Add a Test to check if the GrowCut algorithm produces a different output.

The idea was to provide an additional differential here for this task that adds the test so yes, the code is there and will be visible in the differential.

Sep 22 2022, 8:03 PM · MITK (v2024.06)
floca added a comment to T29313: Add a Test to check if the GrowCut algorithm produces a different output.

What do you mean with removed? Is the code still somewhere? If it was functional it would make no sense if someone has to write a new test from scratch.

Sep 22 2022, 4:44 PM · MITK (v2024.06)
j762e added a comment to T29311: Further observation of the GrowCut segmentation tool on 4D images.

I have added a checklist for growcut into Checklist Segmentation – 3D Segmentation_EN.docx in Nextcloud.
There are no specific test cases (checklists) for other tools on 4D images as far as I know/have seen.
I think this Task should just kept in mind because the growcut tool is new.

Sep 22 2022, 3:57 PM · MITK (v2023.04)
j762e added a comment to T29313: Add a Test to check if the GrowCut algorithm produces a different output.

I already wrote a test, but removed it for now so I could create the Diff (D712).
Now the Diff needs to be accepted and the T28851-AddImagesForGrowCutSegmentationTest Branch needs to be merged into the mitkdata repository:

Sep 22 2022, 3:36 PM · MITK (v2024.06)
kalali closed T29219: StatusBar / mouse scrolling is broken as Resolved.
Sep 22 2022, 11:26 AM · MITK (v2022.10)
kalali committed rMITKe36380da1e5f: Update the status bar correctly (authored by kalali).
Update the status bar correctly
Sep 22 2022, 11:25 AM
kalali committed rMITK2eee153e5804: Merge remote-tracking branch 'maleike/fix-status-bar-updates' into develop (authored by kalali).
Merge remote-tracking branch 'maleike/fix-status-bar-updates' into develop
Sep 22 2022, 11:25 AM
maleike committed rMITK125b15152e2e: Force a rendering update before updating the status bar. (authored by maleike).
Force a rendering update before updating the status bar.
Sep 22 2022, 11:25 AM
kalali closed T29265: QmitkSelectableGLWidget is not used anymore and can be removed as Resolved.
Sep 22 2022, 11:22 AM · MITK (v2022.10)
kalali committed rMITK0c57d7ad6218: Remove unused QmitkSelectableGLWidget (authored by kalali).
Remove unused QmitkSelectableGLWidget
Sep 22 2022, 11:22 AM
kalali committed rMITK3edfcc488dc7: Remove QmitkSelectableGLWidget and unnecessary includes (authored by kalali).
Remove QmitkSelectableGLWidget and unnecessary includes
Sep 22 2022, 11:22 AM

Sep 21 2022

kalali added a revision to T29265: QmitkSelectableGLWidget is not used anymore and can be removed: Unknown Object (Differential Revision).
Sep 21 2022, 7:35 PM · MITK (v2022.10)
kalali claimed T29265: QmitkSelectableGLWidget is not used anymore and can be removed.
Sep 21 2022, 5:34 PM · MITK (v2022.10)
k688h removed a project from T28357: Running Isolated container in Kaapana ( Instead of Default Docker): Request for Discussion.
Sep 21 2022, 2:58 PM · Restricted Project, Kaapana (internal)
k688h removed a project from T28043: TFDA MVP1-Tasks:Tools and Technologies: Request for Discussion.
Sep 21 2022, 2:58 PM · Restricted Project, Kaapana (internal)
k688h triaged T28167: System set up: Multi Provider Site Version as Normal priority.
Sep 21 2022, 2:57 PM · Restricted Project
k688h removed a parent task for T29016: TFDA MVP - Airflow 2 Migration + Latest Kaapana Dev Branch Integration: Unknown Object (Maniphest Task).
Sep 21 2022, 2:41 PM · Restricted Project
floca added a comment to T29311: Further observation of the GrowCut segmentation tool on 4D images.

Do we have a checklist for growcut? I guess that would be the place to add additional cases, wouldn't it?

Sep 21 2022, 2:05 PM · MITK (v2023.04)
floca added a comment to T29313: Add a Test to check if the GrowCut algorithm produces a different output.

Haven't you added a test alread? Or are you thinking about other test cases?
If this is the case, could you give a bit more input regarding your thoughts.

Sep 21 2022, 2:04 PM · MITK (v2024.06)
j762e triaged T29313: Add a Test to check if the GrowCut algorithm produces a different output as Normal priority.
Sep 21 2022, 1:39 PM · MITK (v2024.06)
j762e renamed T28851: [SEG] Add ITK GrowCut as segmentation tool from [SEG] Add ITK Growcut as segmentation tool to [SEG] Add ITK GrowCut as segmentation tool.
Sep 21 2022, 1:33 PM · MITK (v2022.10)
j762e renamed T28851: [SEG] Add ITK GrowCut as segmentation tool from [SEG] Evaluate if we should add itkGrowCut as a tool to [SEG] Add ITK Growcut as segmentation tool.
Sep 21 2022, 1:33 PM · MITK (v2022.10)
j762e triaged T29312: Add support for using layers other than layer 0 of the current LabelSetImage as Wishlist priority.
Sep 21 2022, 1:29 PM · MITK (v2023.04)
j762e triaged T29311: Further observation of the GrowCut segmentation tool on 4D images as Normal priority.
Sep 21 2022, 1:26 PM · MITK (v2023.04)
j762e triaged T29310: [ITK] Check if ITK 5.3 adds the GrowCut remote module by default as Normal priority.
Sep 21 2022, 1:24 PM · MITK (v2023.12)
j762e triaged T29309: [GrowCut] Further remarks regarding GrowCut as Low priority.
Sep 21 2022, 1:22 PM · MITK
floca moved T29308: [Segmentation] Check/revise check list of the fill tool and the erase tool from Backlog to Tests/Checklists on the MITK (v2022.10) board.
Sep 21 2022, 12:52 PM · MITK (v2022.10)
floca triaged T29308: [Segmentation] Check/revise check list of the fill tool and the erase tool as High priority.
Sep 21 2022, 12:52 PM · MITK (v2022.10)
floca triaged T29307: [Segmentation] Add a fill tool like e.g. GIMP or Photoshop has as Normal priority.
Sep 21 2022, 12:50 PM · Next Milestone, Request for Discussion, MITK (v2022.10)
floca triaged T29306: [Segmentation] Provide Close tool (behavior of old Fill tool) as Normal priority.
Sep 21 2022, 12:49 PM · Request for Discussion, MITK (v2022.10)
floca removed a project from T29132: [MultiLabel Segmentation] Define desired behavior of fill / erase tool: Request for Discussion.

Discussion results:

Sep 21 2022, 12:44 PM · MITK (v2022.10)
floca added a comment to T29078: [Segmentation] Erase tool has unclear edge cases.

We discussed on it.

Sep 21 2022, 12:38 PM · Next Milestone, Checklist
floca edited projects for T29078: [Segmentation] Erase tool has unclear edge cases, added: Next Milestone; removed MITK (v2022.10), Request for Discussion.
Sep 21 2022, 11:45 AM · Next Milestone, Checklist
floca closed T28886: MITK Flowbench - Reopen created segmentation not working as Invalid.

To make our live a bit easier. I would say it is a data problem ;).

Sep 21 2022, 9:36 AM · MITK (v2022.10), Missing Info, Kaapana (internal)
gaoh added a comment to T28886: MITK Flowbench - Reopen created segmentation not working.

oh so I forgot to send it: But this is, what my browser had cashed: "Yes, so I recently tested it, with the current release."
But also, if I remember correctly, this was due to the Phantom dataset we have as the default dataset:
I removed a few slices at the end, and now it is working.

Sep 21 2022, 9:28 AM · MITK (v2022.10), Missing Info, Kaapana (internal)
floca added a comment to T28886: MITK Flowbench - Reopen created segmentation not working.

@gaoh Ping

Sep 21 2022, 9:07 AM · MITK (v2022.10), Missing Info, Kaapana (internal)
floca added a comment to T28798: [Segmentation][MultiLabel][Utilities] UI is inconsistent / unstable.

@s349i Are those checked now? If not please do this ASAP and verify. Thanks.

Sep 21 2022, 8:57 AM · MITK (v2024.06), Checklist

Sep 20 2022

j762e added a comment to T28851: [SEG] Add ITK GrowCut as segmentation tool.

Some further remarks as I am leaving DKFZ:

Sep 20 2022, 3:33 PM · MITK (v2022.10)